Ggra8832.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8832.t1
Unique NameGgra8832.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length419
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:445976..449302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD15518
PFAMsFMN_red
Max annot lvl2759|Eukaryota
KEGG koko:K11811
Evalue2.31e-110
EggNOG OGsCOG0431@1|root,2QQY8@2759|Eukaryota
DescriptionNADPH-dependent FMN reductase
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8832Ggra8832Gracilaria gracilis GNS1m malegenetig00000860_pilon 445976..449302 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8832.t1Ggra8832.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 445976..449302 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8832.t1.start1Ggra8832.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 445976..445978 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8832.t1.CDS1Ggra8832.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 445976..446189 +
Ggra8832.t1.CDS2Ggra8832.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 448260..449302 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8832.t1.exon1Ggra8832.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 445976..446189 +
Ggra8832.t1.exon2Ggra8832.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 448260..449302 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8832.t1.intron1Ggra8832.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 446190..448259 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8832.t1.stop1Ggra8832.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 449300..449302 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8832.t1 ID=Ggra8832.t1|Name=Ggra8832.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=419bp
MYAYSSQPYDCPLPGATDASTVEQDDYESRSSMVVTGVDSPQYNMSQGAA
DWSGDCVEDLNSYSSPISAVEIAQHIETETMQAGRRIMHKPLLCFSYRIL
GSPFRTTTPSLRHAQRKPFLQNSPPTLRPLSVSRAFVSMTQTSNGMPESN
WVGHRSDPQIPASGPGDDWINPIVDRHLQEAIHFRPAGSQFTHPPRVLVL
YGTLRPKGFSKLLAFECARILEAMGAEVKTFDPHGLPVRDPEVQEHPKVV
ELRELVYWSEAHVWAASELHGNLCSTFKNQIDWIPLNTGSVRPTQGKAVA
VLQVNGGSQSFNVVNTLRLLARWMRMACVVNQSSVQKAWKEFDDYGRMKE
SSMRDRVVDVMEEFIKFVRINREYSSLLTNRYSERKEQEEKGRLLTQAEK
EAAVDAAREEAKKEKANE*
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spliced messenger RNA

>Ggra8832.t1 ID=Ggra8832.t1|Name=Ggra8832.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1257bp|location=Sequence derived from alignment at tig00000860_pilon:445976..449302+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACGCATACTCGTCGCAGCCGTACGACTGCCCGCTGCCGGGCGCCAC
TGACGCGTCGACCGTGGAACAGGATGACTACGAATCGCGCTCGAGCATGG
TGGTCACCGGCGTGGATAGCCCGCAGTACAACATGTCGCAGGGCGCGGCC
GATTGGAGCGGCGACTGTGTGGAAGACCTCAACTCTTATTCGAGCCCGAT
CAGCGCAGTAGAAATCGCTCAGCATATCGAAACTGAAACAATGCAAGCGG
GACGTCGAATTATGCACAAACCTCTTTTGTGCTTCTCGTATCGCATTTTG
GGATCGCCATTTCGAACAACCACACCGTCTCTAAGGCATGCACAGCGCAA
ACCTTTCTTGCAGAATTCCCCACCCACTTTGAGACCGCTATCAGTTTCGC
GAGCATTCGTATCTATGACGCAAACATCAAACGGAATGCCGGAAAGTAAT
TGGGTTGGACATCGATCAGATCCGCAAATACCAGCATCCGGACCGGGAGA
TGATTGGATTAACCCGATTGTGGATCGACACTTGCAAGAAGCCATTCATT
TCCGGCCTGCCGGTTCTCAATTTACCCATCCACCTCGCGTTTTGGTCTTA
TATGGAACACTGCGTCCTAAAGGGTTCTCGAAACTCTTAGCATTTGAGTG
CGCAAGGATCCTAGAAGCGATGGGAGCCGAAGTAAAAACATTTGACCCTC
ACGGATTACCTGTGCGAGATCCCGAAGTACAGGAACATCCAAAAGTAGTT
GAGTTGAGGGAGTTAGTATATTGGAGTGAGGCGCATGTGTGGGCTGCTTC
TGAACTTCATGGAAATCTCTGTTCGACGTTTAAGAACCAAATCGATTGGA
TTCCACTCAATACAGGGTCTGTCAGGCCCACACAAGGAAAAGCAGTCGCA
GTTTTGCAAGTTAATGGCGGAAGCCAATCTTTCAATGTTGTCAACACTTT
GAGATTACTGGCACGGTGGATGAGGATGGCCTGCGTCGTCAATCAGAGCT
CGGTACAGAAAGCATGGAAGGAATTTGATGATTATGGTAGAATGAAGGAG
AGCAGTATGAGGGATCGGGTTGTTGATGTCATGGAGGAGTTCATCAAGTT
TGTCAGAATTAACAGAGAATATAGCAGTTTGCTCACAAACCGCTACTCGG
AAAGAAAAGAACAAGAGGAGAAGGGCCGGCTTCTTACACAAGCTGAAAAA
GAAGCAGCGGTCGACGCTGCGAGAGAAGAAGCCAAAAAGGAAAAGGCGAA
TGAGTGA
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protein sequence of Ggra8832.t1

>Ggra8832.t1 ID=Ggra8832.t1|Name=Ggra8832.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=419bp
MYAYSSQPYDCPLPGATDASTVEQDDYESRSSMVVTGVDSPQYNMSQGAA
DWSGDCVEDLNSYSSPISAVEIAQHIETETMQAGRRIMHKPLLCFSYRIL
GSPFRTTTPSLRHAQRKPFLQNSPPTLRPLSVSRAFVSMTQTSNGMPESN
WVGHRSDPQIPASGPGDDWINPIVDRHLQEAIHFRPAGSQFTHPPRVLVL
YGTLRPKGFSKLLAFECARILEAMGAEVKTFDPHGLPVRDPEVQEHPKVV
ELRELVYWSEAHVWAASELHGNLCSTFKNQIDWIPLNTGSVRPTQGKAVA
VLQVNGGSQSFNVVNTLRLLARWMRMACVVNQSSVQKAWKEFDDYGRMKE
SSMRDRVVDVMEEFIKFVRINREYSSLLTNRYSERKEQEEKGRLLTQAEK
EAAVDAAREEAKKEKANE*
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mRNA from alignment at tig00000860_pilon:445976..449302+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8832.t1 ID=Ggra8832.t1|Name=Ggra8832.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3327bp|location=Sequence derived from alignment at tig00000860_pilon:445976..449302+ (Gracilaria gracilis GNS1m male)
ATGTACGCATACTCGTCGCAGCCGTACGACTGCCCGCTGCCGGGCGCCAC
TGACGCGTCGACCGTGGAACAGGATGACTACGAATCGCGCTCGAGCATGG
TGGTCACCGGCGTGGATAGCCCGCAGTACAACATGTCGCAGGGCGCGGCC
GATTGGAGCGGCGACTGTGTGGAAGACCTCAACTCTTATTCGAGCCCGAT
CAGCGCAGTAGAAAGTATGCTGCGGAAGTCCCTTTTCCCACCCGTTAGCG
CTCATCGTGGCTACCAAGCCCCACGTTTCGCCGTATCGTCGTACGAACTC
CCCCATTCTCGCCCCGCTTGCGCTCACGTGGAAGTATCCTTCGCATTTCT
TCAACTTTGTGGTCGTTGTCCGTGTTCAAGAACTGCAATGGTCGCCTATG
GGAGTGCGTTCGTTAAACCAACGGCGCTTGTCAACGCGCATGGAAAttaa
accccatcacggttcatccaggggtttgtatactgaagctatttgacTAT
AGCCCAGTCGCCGTGTGCTATAATTGACAAGGTGAGCTGAAATAACGAGT
ATTTGCTTGCGCTTCCTACAGTCTGCCGGTAACGTCCGGGATAGTCGTCG
GAGTGGCGCTCGCCATCCACGCACTCCCCACTAGGCGGATTGCCGTTCAT
TGGGATATAAACGCTGCAAATACAGTTCTACCGGCACGAACTCAACCAAG
ACAGGCATCGTATTCATTTTGTTTTCCTTTCGAGCTCGAACTAGCTTTCC
CCTTGCTGCCTTCACATCACCGGCAAATGCAGTGTCGCTCAATATGACGA
AAgggggtggtgtgcaactgtactctcgaagcgaaggccagtacaaaccg
gaaatgtatgcaagtctgctgtcatgccaactgctcagagaattgaaagc
tccgtgtataatctccttcttaaagttccacaccaagAGATTCGTAATTT
CCAATTTCTTCGTCTACGCAATGTAGTATGCATTTTGTACATCTACATCA
CTGAAGTCTACAATTGGAATTTGAGATCCGTCGGTTACTCCAAATATGCC
ACTCAAAGCGACTCTATAAGCGTGGTACCTTTCGACAAGTTCATACGACT
CACTCATTTTCTCTTTAGTTGGCCACGATATTCAAAAGCTCTCATTAAAT
TTGTTTGTTAATATAATATACAGAACATTCATCCAATGATTAAACCAATC
AGAAATAATTGACGGCGTTATGCCGAAAAGCGAGCAAAGAGAACACAACA
TCATTTTGCCACACCGCATGCACCACAAACACAACCCCAGCAAATCTATG
GTGGTAAGCAAAGGGGCGCGATCTTTTCTACACAATGTTTTTTGAAACAG
AGATCGTTTTTTTGATTAGGTTTTGTTCTTGCGCAGATAGTGGCAGCAGT
TCGTCAAAAAAAAGAAAGTTTGTAACGCCAAAAGACACAACGAAATCTTT
GCTCGTGCTACAGTTTAAGCGGCTTTTTTATAGCGTGCAATTGAATTGAG
GATGGTGAATTCTAGTTCGTTTGTATTTCTGGTTTACTGTGTATTGTTTT
TGAACTTTTTTCTTCTTTGAGTTTAGTTGGATTGTCAAAACTAGCCACGC
TTTGGTAAACACGGTGATGGCAAGAACGGTTTTAAGTCGGTTTGGTTTCA
TTGGTCACTCTCTTGAAGAGAGGTGAGTGGTTGTTGCAACTGTTGAGGTT
TGCGGGTTCTGCTTTTGTTTACTTCTCAATGAGTTAAGTTACACGCTATG
TATGCGTATACGACATCGTTGACTTACATATATATGGTGCAACTGGAACA
CTGTGGGGGGATTCCGCTTACCACCCACAGTTTCACCACAGTAGTATAGC
TAGGGCTTCAGCTGTCGTGCCCTCATTCGCTGCGAAAGTGTAAAAATGGG
AGAACTGTAGGTTCTCGGATGGTCCCAGTGTGTACGGTTCATACGAAGGT
AGATTCCCCGGCGGCCGAGGAGAACCACTAATTGGTGTTATGGCGTGTAG
TCGTTTTACCGGCAACCACTTAAAAGCGCGCACGTGGTTCACGTGTGCTA
GCGCTATACCGTTGGAGATTCGATTGAGTGGAGATGGCCTTATCTACTGG
GCTTGAGCCCGAGGGGCCCATGCCAGTGGCATACAAAGAGATTCTCCGGG
ACCCCATACAGAGGGTATGATATCTAACCTTATTATGGGACGACCACCCA
CTCATCACTTGAAGTGCCACGTCATCCACATCAGCTCTCAACCGGACTTG
CGTCATTAGCGTATTGTTCTGCTAGCGTCTCCAGTCGCTCAGCATATCGA
AACTGAAACAATGCAAGCGGGACGTCGAATTATGCACAAACCTCTTTTGT
GCTTCTCGTATCGCATTTTGGGATCGCCATTTCGAACAACCACACCGTCT
CTAAGGCATGCACAGCGCAAACCTTTCTTGCAGAATTCCCCACCCACTTT
GAGACCGCTATCAGTTTCGCGAGCATTCGTATCTATGACGCAAACATCAA
ACGGAATGCCGGAAAGTAATTGGGTTGGACATCGATCAGATCCGCAAATA
CCAGCATCCGGACCGGGAGATGATTGGATTAACCCGATTGTGGATCGACA
CTTGCAAGAAGCCATTCATTTCCGGCCTGCCGGTTCTCAATTTACCCATC
CACCTCGCGTTTTGGTCTTATATGGAACACTGCGTCCTAAAGGGTTCTCG
AAACTCTTAGCATTTGAGTGCGCAAGGATCCTAGAAGCGATGGGAGCCGA
AGTAAAAACATTTGACCCTCACGGATTACCTGTGCGAGATCCCGAAGTAC
AGGAACATCCAAAAGTAGTTGAGTTGAGGGAGTTAGTATATTGGAGTGAG
GCGCATGTGTGGGCTGCTTCTGAACTTCATGGAAATCTCTGTTCGACGTT
TAAGAACCAAATCGATTGGATTCCACTCAATACAGGGTCTGTCAGGCCCA
CACAAGGAAAAGCAGTCGCAGTTTTGCAAGTTAATGGCGGAAGCCAATCT
TTCAATGTTGTCAACACTTTGAGATTACTGGCACGGTGGATGAGGATGGC
CTGCGTCGTCAATCAGAGCTCGGTACAGAAAGCATGGAAGGAATTTGATG
ATTATGGTAGAATGAAGGAGAGCAGTATGAGGGATCGGGTTGTTGATGTC
ATGGAGGAGTTCATCAAGTTTGTCAGAATTAACAGAGAATATAGCAGTTT
GCTCACAAACCGCTACTCGGAAAGAAAAGAACAAGAGGAGAAGGGCCGGC
TTCTTACACAAGCTGAAAAAGAAGCAGCGGTCGACGCTGCGAGAGAAGAA
GCCAAAAAGGAAAAGGCGAATGAGTGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:445976..449302+

>Ggra8832.t1 ID=Ggra8832.t1|Name=Ggra8832.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1257bp|location=Sequence derived from alignment at tig00000860_pilon:445976..449302+ (Gracilaria gracilis GNS1m male)
ATGTACGCATACTCGTCGCAGCCGTACGACTGCCCGCTGCCGGGCGCCAC
TGACGCGTCGACCGTGGAACAGGATGACTACGAATCGCGCTCGAGCATGG
TGGTCACCGGCGTGGATAGCCCGCAGTACAACATGTCGCAGGGCGCGGCC
GATTGGAGCGGCGACTGTGTGGAAGACCTCAACTCTTATTCGAGCCCGAT
CAGCGCAGTAGAAATCGCTCAGCATATCGAAACTGAAACAATGCAAGCGG
GACGTCGAATTATGCACAAACCTCTTTTGTGCTTCTCGTATCGCATTTTG
GGATCGCCATTTCGAACAACCACACCGTCTCTAAGGCATGCACAGCGCAA
ACCTTTCTTGCAGAATTCCCCACCCACTTTGAGACCGCTATCAGTTTCGC
GAGCATTCGTATCTATGACGCAAACATCAAACGGAATGCCGGAAAGTAAT
TGGGTTGGACATCGATCAGATCCGCAAATACCAGCATCCGGACCGGGAGA
TGATTGGATTAACCCGATTGTGGATCGACACTTGCAAGAAGCCATTCATT
TCCGGCCTGCCGGTTCTCAATTTACCCATCCACCTCGCGTTTTGGTCTTA
TATGGAACACTGCGTCCTAAAGGGTTCTCGAAACTCTTAGCATTTGAGTG
CGCAAGGATCCTAGAAGCGATGGGAGCCGAAGTAAAAACATTTGACCCTC
ACGGATTACCTGTGCGAGATCCCGAAGTACAGGAACATCCAAAAGTAGTT
GAGTTGAGGGAGTTAGTATATTGGAGTGAGGCGCATGTGTGGGCTGCTTC
TGAACTTCATGGAAATCTCTGTTCGACGTTTAAGAACCAAATCGATTGGA
TTCCACTCAATACAGGGTCTGTCAGGCCCACACAAGGAAAAGCAGTCGCA
GTTTTGCAAGTTAATGGCGGAAGCCAATCTTTCAATGTTGTCAACACTTT
GAGATTACTGGCACGGTGGATGAGGATGGCCTGCGTCGTCAATCAGAGCT
CGGTACAGAAAGCATGGAAGGAATTTGATGATTATGGTAGAATGAAGGAG
AGCAGTATGAGGGATCGGGTTGTTGATGTCATGGAGGAGTTCATCAAGTT
TGTCAGAATTAACAGAGAATATAGCAGTTTGCTCACAAACCGCTACTCGG
AAAGAAAAGAACAAGAGGAGAAGGGCCGGCTTCTTACACAAGCTGAAAAA
GAAGCAGCGGTCGACGCTGCGAGAGAAGAAGCCAAAAAGGAAAAGGCGAA
TGAGTGA
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