Ggra8831.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8831.t1
Unique NameGgra8831.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length159
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:437294..437770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5691.AAZ10708
PFAMsAnk_2,Ank_3
Max annot lvl5653|Kinetoplastida
Evalue2.22e-07
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota,3XU6E@5653|Kinetoplastida
DescriptionAnkyrin repeat
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8831Ggra8831Gracilaria gracilis GNS1m malegenetig00000860_pilon 437294..437770 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8831.t1.start1Ggra8831.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 437294..437296 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8831.t1.CDS1Ggra8831.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 437294..437770 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8831.t1.exon1Ggra8831.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 437294..437770 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8831.t1.stop1Ggra8831.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 437768..437770 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8831.t1Ggra8831.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 437294..437770 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8831.t1 ID=Ggra8831.t1|Name=Ggra8831.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=159bp
MQLPIASGADLEMLDNERDTPLHNACYNGLYQNVRLLLGRRAKPSPANDK
LFTQLHISAESGREETVEALFKYGADVGARETNRKTPYRVASERGHQKVM
TPIYSSMATSLNEITEVGVFEVPEGGSSFAKTDLCAICENQLEEGEKKKE
IALRSSVS*
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spliced messenger RNA

>Ggra8831.t1 ID=Ggra8831.t1|Name=Ggra8831.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=477bp|location=Sequence derived from alignment at tig00000860_pilon:437294..437770+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTTGCCGATAGCCAGTGGAGCTGATCTGGAAATGCTGGATAATGA
GAGGGATACACCTTTGCACAACGCATGCTACAACGGTTTATATCAAAATG
TTCGCCTCCTTCTTGGAAGAAGGGCAAAACCTTCTCCAGCGAATGACAAA
TTGTTCACGCAATTGCACATTTCTGCTGAATCAGGAAGAGAAGAAACTGT
AGAAGCATTGTTCAAATACGGAGCGGATGTCGGTGCACGAGAAACAAATC
GCAAGACTCCGTATCGTGTGGCATCAGAACGCGGACATCAAAAGGTGATG
ACCCCTATCTACAGTTCAATGGCAACTTCGCTAAATGAAATAACAGAAGT
GGGAGTGTTCGAGGTTCCTGAGGGTGGTAGTTCTTTTGCCAAGACAGATC
TTTGTGCAATATGTGAGAATCAGTTAGAGGAAGGCGAGAAAAAGAAGGAA
ATTGCGCTGCGTTCATCTGTTTCATGA
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protein sequence of Ggra8831.t1

>Ggra8831.t1 ID=Ggra8831.t1|Name=Ggra8831.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=159bp
MQLPIASGADLEMLDNERDTPLHNACYNGLYQNVRLLLGRRAKPSPANDK
LFTQLHISAESGREETVEALFKYGADVGARETNRKTPYRVASERGHQKVM
TPIYSSMATSLNEITEVGVFEVPEGGSSFAKTDLCAICENQLEEGEKKKE
IALRSSVS*
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mRNA from alignment at tig00000860_pilon:437294..437770+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8831.t1 ID=Ggra8831.t1|Name=Ggra8831.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=477bp|location=Sequence derived from alignment at tig00000860_pilon:437294..437770+ (Gracilaria gracilis GNS1m male)
ATGCAGTTGCCGATAGCCAGTGGAGCTGATCTGGAAATGCTGGATAATGA
GAGGGATACACCTTTGCACAACGCATGCTACAACGGTTTATATCAAAATG
TTCGCCTCCTTCTTGGAAGAAGGGCAAAACCTTCTCCAGCGAATGACAAA
TTGTTCACGCAATTGCACATTTCTGCTGAATCAGGAAGAGAAGAAACTGT
AGAAGCATTGTTCAAATACGGAGCGGATGTCGGTGCACGAGAAACAAATC
GCAAGACTCCGTATCGTGTGGCATCAGAACGCGGACATCAAAAGGTGATG
ACCCCTATCTACAGTTCAATGGCAACTTCGCTAAATGAAATAACAGAAGT
GGGAGTGTTCGAGGTTCCTGAGGGTGGTAGTTCTTTTGCCAAGACAGATC
TTTGTGCAATATGTGAGAATCAGTTAGAGGAAGGCGAGAAAAAGAAGGAA
ATTGCGCTGCGTTCATCTGTTTCATGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:437294..437770+

>Ggra8831.t1 ID=Ggra8831.t1|Name=Ggra8831.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=477bp|location=Sequence derived from alignment at tig00000860_pilon:437294..437770+ (Gracilaria gracilis GNS1m male)
ATGCAGTTGCCGATAGCCAGTGGAGCTGATCTGGAAATGCTGGATAATGA
GAGGGATACACCTTTGCACAACGCATGCTACAACGGTTTATATCAAAATG
TTCGCCTCCTTCTTGGAAGAAGGGCAAAACCTTCTCCAGCGAATGACAAA
TTGTTCACGCAATTGCACATTTCTGCTGAATCAGGAAGAGAAGAAACTGT
AGAAGCATTGTTCAAATACGGAGCGGATGTCGGTGCACGAGAAACAAATC
GCAAGACTCCGTATCGTGTGGCATCAGAACGCGGACATCAAAAGGTGATG
ACCCCTATCTACAGTTCAATGGCAACTTCGCTAAATGAAATAACAGAAGT
GGGAGTGTTCGAGGTTCCTGAGGGTGGTAGTTCTTTTGCCAAGACAGATC
TTTGTGCAATATGTGAGAATCAGTTAGAGGAAGGCGAGAAAAAGAAGGAA
ATTGCGCTGCGTTCATCTGTTTCATGA
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