Ggra8830.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8830.t1
Unique Name	Ggra8830.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	323

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:436014..436982 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	51511.ENSCSAVP00000000945
PFAMs	Ank_2,DUF3454,EGF,EGF_CA,NOD,NODP,Notch,hEGF
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K02599
KEGG Pathway	ko01522,ko04320,ko04330,ko04658,ko04919,ko05020,ko05165,ko05200,ko05206,ko05224,map01522,map04320,map04330,map04658,map04919,map05020,map05165,map05200,map05206,map05224
KEGG Module	M00682
Evalue	3.88e-07
EggNOG OGs	KOG1217@1\|root,KOG1217@2759\|Eukaryota,38BUP@33154\|Opisthokonta,3BAFT@33208\|Metazoa,3CRZB@33213\|Bilateria,485Y1@7711\|Chordata
Description	negative regulation of growth rate
COG category	T
BRITE	ko00000,ko00001,ko00002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8830	Ggra8830	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 436014..436982 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8830.t1.start1	Ggra8830.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 436014..436016 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8830.t1.CDS1	Ggra8830.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 436014..436982 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8830.t1.exon1	Ggra8830.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 436014..436982 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8830.t1.stop1	Ggra8830.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 436980..436982 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8830.t1	Ggra8830.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 436014..436982 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:436014..436982+
coding sequence from alignment at tig00000860_pilon:436014..436982+

mRNA sequence

>Ggra8830.t1 ID=Ggra8830.t1|Name=Ggra8830.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=323bp
MAIRHHSLACLDSLVKAGARVHAKHIENWAALHEGVKTSGSRVDIIEYLL
ENCDVDINSVDDDGWNPLHVAARFGTSEAVDVLVRAGCNLHAQTEDKETA
VLLAGAQSGSTEVLRKLLSYGAKINLNRNTALTPTRLIFGRKDFDQLCIL
LDHLNNMDADDRQEALDLELPSDAGNTLPHHCVIERQIKSTRKLMAHGAD
SNKTNRDGVAPLHLACSNGLSDMTRVLLERRANANVVRGDGLTPLHIACD
SGNEEVARILLEHSCDVDKLVLQGGRYSGFTPMMFAASLSNAEIIGVLIT
TNASLDFAKGDGFTTLHLAAFN*

spliced messenger RNA

>Ggra8830.t1 ID=Ggra8830.t1|Name=Ggra8830.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=969bp|location=Sequence derived from alignment at tig00000860_pilon:436014..436982+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGATTAGACATCATTCCTTGGCATGCCTAGACTCACTAGTGAAAGC
TGGAGCTCGAGTTCATGCCAAACATATAGAGAACTGGGCCGCCCTTCATG
AAGGTGTGAAGACGAGCGGTTCTCGCGTGGACATCATCGAATATTTGCTT
GAGAACTGTGATGTTGACATCAATTCGGTAGACGATGATGGCTGGAATCC
GCTGCACGTGGCTGCACGATTTGGAACTTCTGAAGCCGTTGACGTGCTTG
TCCGAGCAGGATGCAACCTCCACGCCCAAACGGAGGACAAAGAAACAGCT
GTTCTACTGGCTGGCGCTCAGTCAGGAAGTACGGAGGTTCTTCGAAAGCT
TTTGTCTTACGGTGCCAAGATCAACCTGAACCGCAATACGGCTCTAACAC
CAACCAGACTTATCTTTGGCAGAAAGGATTTTGACCAGTTGTGCATACTT
TTGGATCATCTTAATAATATGGATGCAGATGACCGACAGGAAGCGCTGGA
TCTCGAGTTGCCATCTGATGCGGGAAACACCCTCCCACATCACTGCGTGA
TCGAAAGGCAAATCAAATCCACACGTAAGTTGATGGCGCATGGTGCCGAT
TCAAACAAGACTAACCGAGACGGAGTGGCACCCCTACACTTGGCATGCAG
CAACGGCTTATCAGATATGACTCGAGTACTCTTAGAAAGAAGAGCAAATG
CCAATGTTGTTCGCGGTGACGGTCTCACTCCACTTCACATTGCCTGTGAC
AGTGGTAATGAAGAAGTGGCACGAATTTTACTGGAGCACAGCTGCGATGT
TGATAAACTGGTTCTTCAAGGTGGTAGGTACAGTGGCTTCACCCCTATGA
TGTTCGCAGCCAGCCTGAGCAATGCGGAAATTATTGGGGTGCTTATCACT
ACGAATGCATCTTTGGACTTTGCCAAAGGGGATGGATTCACCACTCTCCA
TTTAGCAGCGTTTAACTGA

protein sequence of Ggra8830.t1

>Ggra8830.t1 ID=Ggra8830.t1|Name=Ggra8830.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=323bp
MAIRHHSLACLDSLVKAGARVHAKHIENWAALHEGVKTSGSRVDIIEYLL
ENCDVDINSVDDDGWNPLHVAARFGTSEAVDVLVRAGCNLHAQTEDKETA
VLLAGAQSGSTEVLRKLLSYGAKINLNRNTALTPTRLIFGRKDFDQLCIL
LDHLNNMDADDRQEALDLELPSDAGNTLPHHCVIERQIKSTRKLMAHGAD
SNKTNRDGVAPLHLACSNGLSDMTRVLLERRANANVVRGDGLTPLHIACD
SGNEEVARILLEHSCDVDKLVLQGGRYSGFTPMMFAASLSNAEIIGVLIT
TNASLDFAKGDGFTTLHLAAFN*

mRNA from alignment at tig00000860_pilon:436014..436982+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8830.t1 ID=Ggra8830.t1|Name=Ggra8830.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=969bp|location=Sequence derived from alignment at tig00000860_pilon:436014..436982+ (Gracilaria gracilis GNS1m male)
ATGGCGATTAGACATCATTCCTTGGCATGCCTAGACTCACTAGTGAAAGC
TGGAGCTCGAGTTCATGCCAAACATATAGAGAACTGGGCCGCCCTTCATG
AAGGTGTGAAGACGAGCGGTTCTCGCGTGGACATCATCGAATATTTGCTT
GAGAACTGTGATGTTGACATCAATTCGGTAGACGATGATGGCTGGAATCC
GCTGCACGTGGCTGCACGATTTGGAACTTCTGAAGCCGTTGACGTGCTTG
TCCGAGCAGGATGCAACCTCCACGCCCAAACGGAGGACAAAGAAACAGCT
GTTCTACTGGCTGGCGCTCAGTCAGGAAGTACGGAGGTTCTTCGAAAGCT
TTTGTCTTACGGTGCCAAGATCAACCTGAACCGCAATACGGCTCTAACAC
CAACCAGACTTATCTTTGGCAGAAAGGATTTTGACCAGTTGTGCATACTT
TTGGATCATCTTAATAATATGGATGCAGATGACCGACAGGAAGCGCTGGA
TCTCGAGTTGCCATCTGATGCGGGAAACACCCTCCCACATCACTGCGTGA
TCGAAAGGCAAATCAAATCCACACGTAAGTTGATGGCGCATGGTGCCGAT
TCAAACAAGACTAACCGAGACGGAGTGGCACCCCTACACTTGGCATGCAG
CAACGGCTTATCAGATATGACTCGAGTACTCTTAGAAAGAAGAGCAAATG
CCAATGTTGTTCGCGGTGACGGTCTCACTCCACTTCACATTGCCTGTGAC
AGTGGTAATGAAGAAGTGGCACGAATTTTACTGGAGCACAGCTGCGATGT
TGATAAACTGGTTCTTCAAGGTGGTAGGTACAGTGGCTTCACCCCTATGA
TGTTCGCAGCCAGCCTGAGCAATGCGGAAATTATTGGGGTGCTTATCACT
ACGAATGCATCTTTGGACTTTGCCAAAGGGGATGGATTCACCACTCTCCA
TTTAGCAGCGTTTAACTGA

Coding sequence (CDS) from alignment at tig00000860_pilon:436014..436982+

>Ggra8830.t1 ID=Ggra8830.t1|Name=Ggra8830.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=969bp|location=Sequence derived from alignment at tig00000860_pilon:436014..436982+ (Gracilaria gracilis GNS1m male)
ATGGCGATTAGACATCATTCCTTGGCATGCCTAGACTCACTAGTGAAAGC
TGGAGCTCGAGTTCATGCCAAACATATAGAGAACTGGGCCGCCCTTCATG
AAGGTGTGAAGACGAGCGGTTCTCGCGTGGACATCATCGAATATTTGCTT
GAGAACTGTGATGTTGACATCAATTCGGTAGACGATGATGGCTGGAATCC
GCTGCACGTGGCTGCACGATTTGGAACTTCTGAAGCCGTTGACGTGCTTG
TCCGAGCAGGATGCAACCTCCACGCCCAAACGGAGGACAAAGAAACAGCT
GTTCTACTGGCTGGCGCTCAGTCAGGAAGTACGGAGGTTCTTCGAAAGCT
TTTGTCTTACGGTGCCAAGATCAACCTGAACCGCAATACGGCTCTAACAC
CAACCAGACTTATCTTTGGCAGAAAGGATTTTGACCAGTTGTGCATACTT
TTGGATCATCTTAATAATATGGATGCAGATGACCGACAGGAAGCGCTGGA
TCTCGAGTTGCCATCTGATGCGGGAAACACCCTCCCACATCACTGCGTGA
TCGAAAGGCAAATCAAATCCACACGTAAGTTGATGGCGCATGGTGCCGAT
TCAAACAAGACTAACCGAGACGGAGTGGCACCCCTACACTTGGCATGCAG
CAACGGCTTATCAGATATGACTCGAGTACTCTTAGAAAGAAGAGCAAATG
CCAATGTTGTTCGCGGTGACGGTCTCACTCCACTTCACATTGCCTGTGAC
AGTGGTAATGAAGAAGTGGCACGAATTTTACTGGAGCACAGCTGCGATGT
TGATAAACTGGTTCTTCAAGGTGGTAGGTACAGTGGCTTCACCCCTATGA
TGTTCGCAGCCAGCCTGAGCAATGCGGAAATTATTGGGGTGCTTATCACT
ACGAATGCATCTTTGGACTTTGCCAAAGGGGATGGATTCACCACTCTCCA
TTTAGCAGCGTTTAACTGA