Ggra8829.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8829.t1
Unique NameGgra8829.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length176
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:432012..432583 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8829Ggra8829Gracilaria gracilis GNS1m malegenetig00000860_pilon 432012..432583 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8829.t1Ggra8829.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 432012..432583 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8829.t1.stop1Ggra8829.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 432012..432014 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8829.t1.CDS1Ggra8829.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 432012..432067 -
Ggra8829.t1.CDS2Ggra8829.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 432112..432583 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8829.t1.exon1Ggra8829.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 432012..432067 -
Ggra8829.t1.exon2Ggra8829.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 432112..432583 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8829.t1.intron1Ggra8829.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 432068..432111 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8829.t1.start1Ggra8829.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 432581..432583 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8829.t1 ID=Ggra8829.t1|Name=Ggra8829.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=176bp
MSVTSFTSQLERAVIKSSFQSLFSPHPDNVSATTALFSRKPTFGLTPFAN
ATTTPGLVHPSPSLLPIFTPAVHNAAIPSPNGTDPMQITPYLAAAGRKAV
CGEFMNMPSYAAPGANPHQPSHVAAERKVPDRTPSPNYSMPVVANTGVQV
EHITPRNRSIDVTHDSDSAPEVQVH*
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spliced messenger RNA

>Ggra8829.t1 ID=Ggra8829.t1|Name=Ggra8829.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=528bp|location=Sequence derived from alignment at tig00000860_pilon:432012..432583- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGTCACCTCTTTCACCTCGCAGCTGGAACGCGCCGTCATCAAGAG
CTCCTTTCAAAGCCTGTTCAGTCCCCACCCGGATAATGTATCCGCCACGA
CTGCGCTGTTTTCCAGAAAACCCACTTTCGGACTCACGCCGTTTGCGAAC
GCTACCACCACCCCAGGCCTGGTGCACCCTTCCCCGTCGCTGTTGCCCAT
CTTCACTCCTGCTGTGCACAATGCTGCTATACCCTCTCCTAATGGAACTG
ATCCTATGCAAATTACGCCGTATCTGGCCGCTGCGGGCAGGAAAGCTGTG
TGTGGGGAGTTCATGAATATGCCCAGCTACGCTGCTCCTGGCGCCAACCC
TCATCAGCCTTCGCACGTGGCTGCGGAACGTAAGGTTCCGGACAGGACGC
CTTCTCCCAATTACTCTATGCCAGTTGTGGCCAACACCGGTGTGCAAGTT
GAACACATTACGCCGAGGAACAGGAGTATCGACGTCACTCATGATTCTGA
TTCTGCCCCCGAGGTTCAGGTTCATTAA
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protein sequence of Ggra8829.t1

>Ggra8829.t1 ID=Ggra8829.t1|Name=Ggra8829.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=176bp
MSVTSFTSQLERAVIKSSFQSLFSPHPDNVSATTALFSRKPTFGLTPFAN
ATTTPGLVHPSPSLLPIFTPAVHNAAIPSPNGTDPMQITPYLAAAGRKAV
CGEFMNMPSYAAPGANPHQPSHVAAERKVPDRTPSPNYSMPVVANTGVQV
EHITPRNRSIDVTHDSDSAPEVQVH*
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mRNA from alignment at tig00000860_pilon:432012..432583-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8829.t1 ID=Ggra8829.t1|Name=Ggra8829.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=572bp|location=Sequence derived from alignment at tig00000860_pilon:432012..432583- (Gracilaria gracilis GNS1m male)
ATGTCCGTCACCTCTTTCACCTCGCAGCTGGAACGCGCCGTCATCAAGAG
CTCCTTTCAAAGCCTGTTCAGTCCCCACCCGGATAATGTATCCGCCACGA
CTGCGCTGTTTTCCAGAAAACCCACTTTCGGACTCACGCCGTTTGCGAAC
GCTACCACCACCCCAGGCCTGGTGCACCCTTCCCCGTCGCTGTTGCCCAT
CTTCACTCCTGCTGTGCACAATGCTGCTATACCCTCTCCTAATGGAACTG
ATCCTATGCAAATTACGCCGTATCTGGCCGCTGCGGGCAGGAAAGCTGTG
TGTGGGGAGTTCATGAATATGCCCAGCTACGCTGCTCCTGGCGCCAACCC
TCATCAGCCTTCGCACGTGGCTGCGGAACGTAAGGTTCCGGACAGGACGC
CTTCTCCCAATTACTCTATGCCAGTTGTGGCCAACACCGGTGTGCAAGTT
GAACACATTACGCCGAGGAACAGTGCCACGGAGCCATCACATACAGAGAG
CAGCTATTACTTGCAGGGAGTATCGACGTCACTCATGATTCTGATTCTGC
CCCCGAGGTTCAGGTTCATTAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:432012..432583-

>Ggra8829.t1 ID=Ggra8829.t1|Name=Ggra8829.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=528bp|location=Sequence derived from alignment at tig00000860_pilon:432012..432583- (Gracilaria gracilis GNS1m male)
ATGTCCGTCACCTCTTTCACCTCGCAGCTGGAACGCGCCGTCATCAAGAG
CTCCTTTCAAAGCCTGTTCAGTCCCCACCCGGATAATGTATCCGCCACGA
CTGCGCTGTTTTCCAGAAAACCCACTTTCGGACTCACGCCGTTTGCGAAC
GCTACCACCACCCCAGGCCTGGTGCACCCTTCCCCGTCGCTGTTGCCCAT
CTTCACTCCTGCTGTGCACAATGCTGCTATACCCTCTCCTAATGGAACTG
ATCCTATGCAAATTACGCCGTATCTGGCCGCTGCGGGCAGGAAAGCTGTG
TGTGGGGAGTTCATGAATATGCCCAGCTACGCTGCTCCTGGCGCCAACCC
TCATCAGCCTTCGCACGTGGCTGCGGAACGTAAGGTTCCGGACAGGACGC
CTTCTCCCAATTACTCTATGCCAGTTGTGGCCAACACCGGTGTGCAAGTT
GAACACATTACGCCGAGGAACAGGAGTATCGACGTCACTCATGATTCTGA
TTCTGCCCCCGAGGTTCAGGTTCATTAA
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