Ggra8828.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8828.t1
Unique NameGgra8828.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length323
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:399674..400642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8828Ggra8828Gracilaria gracilis GNS1m malegenetig00000860_pilon 399674..400642 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8828.t1.start1Ggra8828.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 399674..399676 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8828.t1.CDS1Ggra8828.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 399674..400642 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8828.t1.exon1Ggra8828.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 399674..400642 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8828.t1.stop1Ggra8828.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 400640..400642 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8828.t1Ggra8828.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 399674..400642 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8828.t1 ID=Ggra8828.t1|Name=Ggra8828.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=323bp
MMREERRDLRALIHDQEDTLSLAIDAPNVPRQPSYYIKFSNPEDQVTLYR
EEMKSVLGKHVVRFLEASHKLHMTASTIHMLGLTESTGDCHDYDNGQPGI
DWNIRSVFWDHPEGTFYDVDDADGEILAHTCIRHFFDGHQEDQPHQIGSD
NCFIFGTQLRTLAVFQILMWCTRTENGRRRLLLPHSRSRESSSVTPRYRI
HNLDDVVFQDRYDLCIQEAVCNSPDILNCRSPNTYWQYFVRMAHRFERHE
NLPLRIRDFWDIQKHLLQWHVTLRHVACRGRPNIVDLVAIPSGVYVVLLK
GTNGVVHSLVVDTSHDIIVDCA*
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spliced messenger RNA

>Ggra8828.t1 ID=Ggra8828.t1|Name=Ggra8828.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=969bp|location=Sequence derived from alignment at tig00000860_pilon:399674..400642+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCGGGAAGAGCGCCGTGATCTTAGGGCGCTAATTCATGATCAAGA
AGACACCTTAAGTCTTGCGATTGACGCACCCAACGTACCGCGACAACCAT
CTTATTACATTAAATTCTCGAACCCGGAGGACCAAGTGACTTTGTACCGT
GAAGAAATGAAATCTGTTCTTGGAAAGCATGTGGTGCGTTTCCTCGAGGC
TTCCCATAAACTTCATATGACCGCCTCGACGATCCATATGTTGGGTCTGA
CTGAGTCCACCGGCGACTGCCACGACTATGATAATGGTCAGCCAGGAATT
GACTGGAACATCCGCTCCGTTTTTTGGGACCACCCTGAGGGCACATTCTA
TGACGTCGACGATGCTGATGGGGAAATTTTGGCCCATACTTGTATACGCC
ATTTTTTTGATGGCCATCAAGAAGACCAACCTCACCAGATTGGTTCGGAC
AATTGTTTCATATTCGGTACACAGCTTCGGACGCTGGCCGTGTTCCAAAT
ACTTATGTGGTGTACCCGCACCGAAAATGGCCGCAGGCGCCTTCTTCTTC
CTCACTCCAGATCTAGAGAATCTAGCTCCGTAACCCCACGGTACCGAATC
CATAACCTTGATGATGTTGTCTTCCAGGATCGCTATGACCTCTGCATCCA
GGAGGCGGTTTGCAACAGCCCGGACATCCTAAACTGTCGAAGCCCGAATA
CGTACTGGCAGTATTTCGTCCGCATGGCACATCGCTTTGAAAGACACGAG
AACTTGCCACTTCGAATCAGAGACTTCTGGGATATTCAGAAACATCTTCT
CCAGTGGCACGTCACTCTTCGTCACGTAGCTTGTCGTGGTAGGCCCAATA
TTGTTGACCTTGTCGCCATCCCGTCCGGTGTTTATGTCGTCCTCTTGAAG
GGCACAAATGGGGTGGTCCACAGTCTCGTCGTCGATACTTCGCACGACAT
CATTGTTGACTGCGCCTAG
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protein sequence of Ggra8828.t1

>Ggra8828.t1 ID=Ggra8828.t1|Name=Ggra8828.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=323bp
MMREERRDLRALIHDQEDTLSLAIDAPNVPRQPSYYIKFSNPEDQVTLYR
EEMKSVLGKHVVRFLEASHKLHMTASTIHMLGLTESTGDCHDYDNGQPGI
DWNIRSVFWDHPEGTFYDVDDADGEILAHTCIRHFFDGHQEDQPHQIGSD
NCFIFGTQLRTLAVFQILMWCTRTENGRRRLLLPHSRSRESSSVTPRYRI
HNLDDVVFQDRYDLCIQEAVCNSPDILNCRSPNTYWQYFVRMAHRFERHE
NLPLRIRDFWDIQKHLLQWHVTLRHVACRGRPNIVDLVAIPSGVYVVLLK
GTNGVVHSLVVDTSHDIIVDCA*
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mRNA from alignment at tig00000860_pilon:399674..400642+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8828.t1 ID=Ggra8828.t1|Name=Ggra8828.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=969bp|location=Sequence derived from alignment at tig00000860_pilon:399674..400642+ (Gracilaria gracilis GNS1m male)
ATGATGCGGGAAGAGCGCCGTGATCTTAGGGCGCTAATTCATGATCAAGA
AGACACCTTAAGTCTTGCGATTGACGCACCCAACGTACCGCGACAACCAT
CTTATTACATTAAATTCTCGAACCCGGAGGACCAAGTGACTTTGTACCGT
GAAGAAATGAAATCTGTTCTTGGAAAGCATGTGGTGCGTTTCCTCGAGGC
TTCCCATAAACTTCATATGACCGCCTCGACGATCCATATGTTGGGTCTGA
CTGAGTCCACCGGCGACTGCCACGACTATGATAATGGTCAGCCAGGAATT
GACTGGAACATCCGCTCCGTTTTTTGGGACCACCCTGAGGGCACATTCTA
TGACGTCGACGATGCTGATGGGGAAATTTTGGCCCATACTTGTATACGCC
ATTTTTTTGATGGCCATCAAGAAGACCAACCTCACCAGATTGGTTCGGAC
AATTGTTTCATATTCGGTACACAGCTTCGGACGCTGGCCGTGTTCCAAAT
ACTTATGTGGTGTACCCGCACCGAAAATGGCCGCAGGCGCCTTCTTCTTC
CTCACTCCAGATCTAGAGAATCTAGCTCCGTAACCCCACGGTACCGAATC
CATAACCTTGATGATGTTGTCTTCCAGGATCGCTATGACCTCTGCATCCA
GGAGGCGGTTTGCAACAGCCCGGACATCCTAAACTGTCGAAGCCCGAATA
CGTACTGGCAGTATTTCGTCCGCATGGCACATCGCTTTGAAAGACACGAG
AACTTGCCACTTCGAATCAGAGACTTCTGGGATATTCAGAAACATCTTCT
CCAGTGGCACGTCACTCTTCGTCACGTAGCTTGTCGTGGTAGGCCCAATA
TTGTTGACCTTGTCGCCATCCCGTCCGGTGTTTATGTCGTCCTCTTGAAG
GGCACAAATGGGGTGGTCCACAGTCTCGTCGTCGATACTTCGCACGACAT
CATTGTTGACTGCGCCTAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:399674..400642+

>Ggra8828.t1 ID=Ggra8828.t1|Name=Ggra8828.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=969bp|location=Sequence derived from alignment at tig00000860_pilon:399674..400642+ (Gracilaria gracilis GNS1m male)
ATGATGCGGGAAGAGCGCCGTGATCTTAGGGCGCTAATTCATGATCAAGA
AGACACCTTAAGTCTTGCGATTGACGCACCCAACGTACCGCGACAACCAT
CTTATTACATTAAATTCTCGAACCCGGAGGACCAAGTGACTTTGTACCGT
GAAGAAATGAAATCTGTTCTTGGAAAGCATGTGGTGCGTTTCCTCGAGGC
TTCCCATAAACTTCATATGACCGCCTCGACGATCCATATGTTGGGTCTGA
CTGAGTCCACCGGCGACTGCCACGACTATGATAATGGTCAGCCAGGAATT
GACTGGAACATCCGCTCCGTTTTTTGGGACCACCCTGAGGGCACATTCTA
TGACGTCGACGATGCTGATGGGGAAATTTTGGCCCATACTTGTATACGCC
ATTTTTTTGATGGCCATCAAGAAGACCAACCTCACCAGATTGGTTCGGAC
AATTGTTTCATATTCGGTACACAGCTTCGGACGCTGGCCGTGTTCCAAAT
ACTTATGTGGTGTACCCGCACCGAAAATGGCCGCAGGCGCCTTCTTCTTC
CTCACTCCAGATCTAGAGAATCTAGCTCCGTAACCCCACGGTACCGAATC
CATAACCTTGATGATGTTGTCTTCCAGGATCGCTATGACCTCTGCATCCA
GGAGGCGGTTTGCAACAGCCCGGACATCCTAAACTGTCGAAGCCCGAATA
CGTACTGGCAGTATTTCGTCCGCATGGCACATCGCTTTGAAAGACACGAG
AACTTGCCACTTCGAATCAGAGACTTCTGGGATATTCAGAAACATCTTCT
CCAGTGGCACGTCACTCTTCGTCACGTAGCTTGTCGTGGTAGGCCCAATA
TTGTTGACCTTGTCGCCATCCCGTCCGGTGTTTATGTCGTCCTCTTGAAG
GGCACAAATGGGGTGGTCCACAGTCTCGTCGTCGATACTTCGCACGACAT
CATTGTTGACTGCGCCTAG
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