Ggra8827.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8827.t1
Unique NameGgra8827.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length249
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:331667..332648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1121930.AQXG01000007_gene479
Preferred nametopA
PFAMsTopoisom_bac,Toprim,Toprim_C_rpt
Max annot lvl976|Bacteroidetes
KEGG koko:K03168
Evalue6.09e-18
EggNOG OGsCOG0550@1|root,COG0550@2|Bacteria,4NF9S@976|Bacteroidetes,1IPJD@117747|Sphingobacteriia
EC5.99.1.2
DescriptionReleases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
COG categoryL
BRITEko00000,ko01000,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8827Ggra8827Gracilaria gracilis GNS1m malegenetig00000860_pilon 331667..332648 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8827.t1Ggra8827.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 331667..332648 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8827.t1.stop1Ggra8827.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 331667..331669 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8827.t1.CDS1Ggra8827.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 331667..332093 -
Ggra8827.t1.CDS2Ggra8827.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 332329..332648 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8827.t1.exon1Ggra8827.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 331667..332093 -
Ggra8827.t1.exon2Ggra8827.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 332329..332648 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8827.t1.intron1Ggra8827.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 332094..332328 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8827.t1.start1Ggra8827.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 332646..332648 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8827.t1 ID=Ggra8827.t1|Name=Ggra8827.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=249bp
MYPETFRYLETDISLSIGCNDDTRKEQKEEDLFEDVRVDEFFSNFAQFAI
NLRDLFDIDINTKHQVRFVRGMHRSGVGTILRQILQEDIRIFCGFMVRVN
PDLVETAPLTPFQHDRMQAMCDRLDLQNGKVISVLNRNMLRHPPTPIITS
TLQQEYGNQFGFGARRTMRTPQKLYENGLITYMRTDNAQLSDQAMDSCRK
AVQRLYGEDMLRDQYTKTPILCIHLELRGFICGQETLMVTISCQPAEM*
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spliced messenger RNA

>Ggra8827.t1 ID=Ggra8827.t1|Name=Ggra8827.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=747bp|location=Sequence derived from alignment at tig00000860_pilon:331667..332648- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATCCGGAAACCTTTCGATACTTGGAAACCGATATTAGCCTTTCTAT
TGGTTGCAACGATGATACGAGGAAAGAACAAAAGGAAGAAGATTTATTTG
AGGATGTTCGTGTGGATGAGTTTTTTTCAAATTTTGCTCAGTTTGCTATC
AATCTTCGTGACTTGTTCGATATCGATATAAATACCAAACATCAAGTACG
CTTCGTTCGTGGGATGCATCGTTCTGGAGTCGGTACAATTTTGCGACAGA
TTTTGCAAGAAGACATTAGGATCTTTTGTGGTTTCATGGTTAGAGTGAAT
CCAGATTTGGTAGAAACAGCCCCACTTACGCCATTCCAGCATGACAGAAT
GCAAGCTATGTGCGATCGTCTAGACCTGCAAAACGGTAAAGTCATATCTG
TTTTGAATCGAAACATGTTGCGTCACCCACCAACCCCAATTATCACCTCA
ACTCTGCAGCAGGAATATGGGAACCAGTTTGGTTTTGGAGCCAGAAGGAC
TATGCGAACTCCTCAGAAATTGTATGAAAATGGTTTGATAACATACATGC
GAACGGATAATGCCCAACTAAGTGACCAAGCTATGGATTCATGCCGAAAA
GCAGTACAACGTCTGTACGGAGAAGATATGCTGCGTGATCAATATACGAA
GACACCAATACTTTGCATCCATCTTGAGCTACGGGGATTTATCTGCGGCC
AAGAAACATTGATGGTCACCATCTCGTGTCAACCAGCAGAGATGTGA
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protein sequence of Ggra8827.t1

>Ggra8827.t1 ID=Ggra8827.t1|Name=Ggra8827.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=249bp
MYPETFRYLETDISLSIGCNDDTRKEQKEEDLFEDVRVDEFFSNFAQFAI
NLRDLFDIDINTKHQVRFVRGMHRSGVGTILRQILQEDIRIFCGFMVRVN
PDLVETAPLTPFQHDRMQAMCDRLDLQNGKVISVLNRNMLRHPPTPIITS
TLQQEYGNQFGFGARRTMRTPQKLYENGLITYMRTDNAQLSDQAMDSCRK
AVQRLYGEDMLRDQYTKTPILCIHLELRGFICGQETLMVTISCQPAEM*
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mRNA from alignment at tig00000860_pilon:331667..332648-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8827.t1 ID=Ggra8827.t1|Name=Ggra8827.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=982bp|location=Sequence derived from alignment at tig00000860_pilon:331667..332648- (Gracilaria gracilis GNS1m male)
ATGTATCCGGAAACCTTTCGATACTTGGAAACCGATATTAGCCTTTCTAT
TGGTTGCAACGATGATACGAGGAAAGAACAAAAGGAAGAAGATTTATTTG
AGGATGTTCGTGTGGATGAGTTTTTTTCAAATTTTGCTCAGTTTGCTATC
AATCTTCGTGACTTGTTCGATATCGATATAAATACCAAACATCAAGTACG
CTTCGTTCGTGGGATGCATCGTTCTGGAGTCGGTACAATTTTGCGACAGA
TTTTGCAAGAAGACATTAGGATCTTTTGTGGTTTCATGGTTAGAGTGAAT
CCAGATTTGGTAGAAACAGCGTTTGGAATTTGAGAAGTCCTCACTTTTCA
GACCATTTCTGACCCTGATTTTCGCATGACGTATGTGGCACATCAAAAGG
TTATTCGTTTACAATTGAAATACGATTCTTTGTTTCCATGTAAAGAGGCC
CTGCGAGTGCATTTATATTGCGTAAACCTGTGTACAACAAAATACAGGCT
CTTCTATGTTGCTGTTGTGTATGTGAAACGCGTGCCTTTGTTCTCTTTCA
AACAGCCCACTTACGCCATTCCAGCATGACAGAATGCAAGCTATGTGCGA
TCGTCTAGACCTGCAAAACGGTAAAGTCATATCTGTTTTGAATCGAAACA
TGTTGCGTCACCCACCAACCCCAATTATCACCTCAACTCTGCAGCAGGAA
TATGGGAACCAGTTTGGTTTTGGAGCCAGAAGGACTATGCGAACTCCTCA
GAAATTGTATGAAAATGGTTTGATAACATACATGCGAACGGATAATGCCC
AACTAAGTGACCAAGCTATGGATTCATGCCGAAAAGCAGTACAACGTCTG
TACGGAGAAGATATGCTGCGTGATCAATATACGAAGACACCAATACTTTG
CATCCATCTTGAGCTACGGGGATTTATCTGCGGCCAAGAAACATTGATGG
TCACCATCTCGTGTCAACCAGCAGAGATGTGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:331667..332648-

>Ggra8827.t1 ID=Ggra8827.t1|Name=Ggra8827.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=747bp|location=Sequence derived from alignment at tig00000860_pilon:331667..332648- (Gracilaria gracilis GNS1m male)
ATGTATCCGGAAACCTTTCGATACTTGGAAACCGATATTAGCCTTTCTAT
TGGTTGCAACGATGATACGAGGAAAGAACAAAAGGAAGAAGATTTATTTG
AGGATGTTCGTGTGGATGAGTTTTTTTCAAATTTTGCTCAGTTTGCTATC
AATCTTCGTGACTTGTTCGATATCGATATAAATACCAAACATCAAGTACG
CTTCGTTCGTGGGATGCATCGTTCTGGAGTCGGTACAATTTTGCGACAGA
TTTTGCAAGAAGACATTAGGATCTTTTGTGGTTTCATGGTTAGAGTGAAT
CCAGATTTGGTAGAAACAGCCCCACTTACGCCATTCCAGCATGACAGAAT
GCAAGCTATGTGCGATCGTCTAGACCTGCAAAACGGTAAAGTCATATCTG
TTTTGAATCGAAACATGTTGCGTCACCCACCAACCCCAATTATCACCTCA
ACTCTGCAGCAGGAATATGGGAACCAGTTTGGTTTTGGAGCCAGAAGGAC
TATGCGAACTCCTCAGAAATTGTATGAAAATGGTTTGATAACATACATGC
GAACGGATAATGCCCAACTAAGTGACCAAGCTATGGATTCATGCCGAAAA
GCAGTACAACGTCTGTACGGAGAAGATATGCTGCGTGATCAATATACGAA
GACACCAATACTTTGCATCCATCTTGAGCTACGGGGATTTATCTGCGGCC
AAGAAACATTGATGGTCACCATCTCGTGTCAACCAGCAGAGATGTGA
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