Ggra8825.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8825.t1
Unique NameGgra8825.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length165
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:325676..326170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704060.1
PFAMsMethyltransf_11,Methyltransf_25
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC01662
KEGG koko:K12502
KEGG ReactionR07501,R10709,R10710
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00112
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006732,GO:0006766,GO:0006775,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0009058,GO:0009108,GO:0009110,GO:0009507,GO:0009526,GO:0009528,GO:0009536,GO:0009706,GO:0009941,GO:0009987,GO:0010189,GO:0010236,GO:0016020,GO:0016740,GO:0016741,GO:0018130,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0032259,GO:0042170,GO:0042180,GO:0042181,GO:0042360,GO:0042362,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0051741,GO:0071704,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1901661,GO:1901663
Evalue4.01e-69
EggNOG OGsCOG2226@1|root,KOG1540@2759|Eukaryota
EC2.1.1.295
Description2-octaprenyl-6-methoxy-1,4-benzoquinone methylase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8825Ggra8825Gracilaria gracilis GNS1m malegenetig00000860_pilon 325676..326170 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8825.t1.start1Ggra8825.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 325676..325678 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8825.t1.CDS1Ggra8825.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 325676..326170 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8825.t1.exon1Ggra8825.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 325676..326170 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8825.t1.stop1Ggra8825.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 326168..326170 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8825.t1Ggra8825.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 325676..326170 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8825.t1 ID=Ggra8825.t1|Name=Ggra8825.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=165bp
MRDRSLSQAQLECPGHDLKTVDVGGGTGFCTEAVANYLDTKHITLLDHGP
LQMSKAKGKKTLEGVMFVEGDAKNLPFQSGAFDRYTSAGSIEYWPEPQRR
IAEAYRVLKPGGVATLIGPVRATNWFSRFLCDLWMLFPMESEYSDWFKAA
GFKDDSRTRLGRKD*
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spliced messenger RNA

>Ggra8825.t1 ID=Ggra8825.t1|Name=Ggra8825.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=495bp|location=Sequence derived from alignment at tig00000860_pilon:325676..326170+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGACCGTTCTCTCAGTCAGGCGCAGCTTGAGTGCCCTGGTCATGA
TCTTAAGACCGTGGATGTTGGGGGTGGTACAGGTTTCTGTACGGAAGCAG
TGGCTAATTACCTTGACACCAAGCATATTACGTTGTTAGACCATGGTCCG
CTTCAAATGTCAAAAGCCAAGGGCAAGAAAACACTGGAAGGTGTCATGTT
TGTCGAAGGAGATGCTAAGAATTTACCATTCCAGAGCGGAGCGTTTGACA
GATATACATCAGCTGGTTCCATTGAGTACTGGCCAGAGCCGCAACGAAGA
ATTGCCGAAGCGTATCGCGTATTGAAGCCTGGTGGCGTGGCTACCCTTAT
CGGACCAGTGCGTGCCACCAACTGGTTCTCGAGATTCTTGTGCGACCTCT
GGATGTTGTTCCCCATGGAGTCTGAATACAGTGATTGGTTTAAAGCAGCT
GGTTTTAAGGACGATTCCCGAACTCGGCTTGGTCGAAAAGATTAG
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protein sequence of Ggra8825.t1

>Ggra8825.t1 ID=Ggra8825.t1|Name=Ggra8825.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=165bp
MRDRSLSQAQLECPGHDLKTVDVGGGTGFCTEAVANYLDTKHITLLDHGP
LQMSKAKGKKTLEGVMFVEGDAKNLPFQSGAFDRYTSAGSIEYWPEPQRR
IAEAYRVLKPGGVATLIGPVRATNWFSRFLCDLWMLFPMESEYSDWFKAA
GFKDDSRTRLGRKD*
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mRNA from alignment at tig00000860_pilon:325676..326170+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8825.t1 ID=Ggra8825.t1|Name=Ggra8825.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=495bp|location=Sequence derived from alignment at tig00000860_pilon:325676..326170+ (Gracilaria gracilis GNS1m male)
ATGCGTGACCGTTCTCTCAGTCAGGCGCAGCTTGAGTGCCCTGGTCATGA
TCTTAAGACCGTGGATGTTGGGGGTGGTACAGGTTTCTGTACGGAAGCAG
TGGCTAATTACCTTGACACCAAGCATATTACGTTGTTAGACCATGGTCCG
CTTCAAATGTCAAAAGCCAAGGGCAAGAAAACACTGGAAGGTGTCATGTT
TGTCGAAGGAGATGCTAAGAATTTACCATTCCAGAGCGGAGCGTTTGACA
GATATACATCAGCTGGTTCCATTGAGTACTGGCCAGAGCCGCAACGAAGA
ATTGCCGAAGCGTATCGCGTATTGAAGCCTGGTGGCGTGGCTACCCTTAT
CGGACCAGTGCGTGCCACCAACTGGTTCTCGAGATTCTTGTGCGACCTCT
GGATGTTGTTCCCCATGGAGTCTGAATACAGTGATTGGTTTAAAGCAGCT
GGTTTTAAGGACGATTCCCGAACTCGGCTTGGTCGAAAAGATTAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:325676..326170+

>Ggra8825.t1 ID=Ggra8825.t1|Name=Ggra8825.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=495bp|location=Sequence derived from alignment at tig00000860_pilon:325676..326170+ (Gracilaria gracilis GNS1m male)
ATGCGTGACCGTTCTCTCAGTCAGGCGCAGCTTGAGTGCCCTGGTCATGA
TCTTAAGACCGTGGATGTTGGGGGTGGTACAGGTTTCTGTACGGAAGCAG
TGGCTAATTACCTTGACACCAAGCATATTACGTTGTTAGACCATGGTCCG
CTTCAAATGTCAAAAGCCAAGGGCAAGAAAACACTGGAAGGTGTCATGTT
TGTCGAAGGAGATGCTAAGAATTTACCATTCCAGAGCGGAGCGTTTGACA
GATATACATCAGCTGGTTCCATTGAGTACTGGCCAGAGCCGCAACGAAGA
ATTGCCGAAGCGTATCGCGTATTGAAGCCTGGTGGCGTGGCTACCCTTAT
CGGACCAGTGCGTGCCACCAACTGGTTCTCGAGATTCTTGTGCGACCTCT
GGATGTTGTTCCCCATGGAGTCTGAATACAGTGATTGGTTTAAAGCAGCT
GGTTTTAAGGACGATTCCCGAACTCGGCTTGGTCGAAAAGATTAG
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