Ggra8822.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8822.t1
Unique NameGgra8822.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length147
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:244423..244863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog318829.MGG_08016T0
PFAMsRPE65
Max annot lvl4751|Fungi
KEGG rclassRC00912,RC01690
KEGG koko:K17842
KEGG ReactionR09782
KEGG Pathwayko00906,ko01100,map00906,map01100
Evalue1.17e-22
EggNOG OGsCOG3670@1|root,KOG1285@2759|Eukaryota,38DX7@33154|Opisthokonta,3NYJJ@4751|Fungi,3QNFB@4890|Ascomycota,21780@147550|Sordariomycetes,41PWH@639021|Magnaporthales
EC1.13.11.59
DescriptionRetinal pigment epithelial membrane protein
COG categoryQ
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8822Ggra8822Gracilaria gracilis GNS1m malegenetig00000860_pilon 244423..244863 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8822.t1.start1Ggra8822.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 244423..244425 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8822.t1.CDS1Ggra8822.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 244423..244863 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8822.t1.exon1Ggra8822.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 244423..244863 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8822.t1.stop1Ggra8822.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 244861..244863 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8822.t1Ggra8822.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 244423..244863 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8822.t1 ID=Ggra8822.t1|Name=Ggra8822.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=147bp
MRLENLMAAKRYGFRKSFLARTEVLNHHMLELPSINSKMERKRHRYVYGV
STSENPFQFGTISKVDVDTGERLARGFRFGIVSEPVFVPDPNGVEEDEGC
ILVVVLDVVGERSSMYVLNAKDLTEIARAEVPQVVPQGFHGMFRGR*
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spliced messenger RNA

>Ggra8822.t1 ID=Ggra8822.t1|Name=Ggra8822.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=441bp|location=Sequence derived from alignment at tig00000860_pilon:244423..244863+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGCTGGAAAATCTGATGGCGGCAAAGCGATACGGATTTCGAAAATC
ATTTCTCGCAAGAACAGAGGTTTTGAATCATCACATGCTGGAGCTCCCAT
CCATCAATTCAAAGATGGAGAGGAAACGACACAGGTACGTGTATGGGGTT
TCGACTTCTGAGAATCCGTTCCAGTTCGGAACAATATCTAAGGTGGATGT
TGACACCGGGGAACGATTGGCCCGTGGTTTCAGGTTCGGAATTGTGAGTG
AGCCTGTTTTTGTTCCGGACCCAAATGGGGTCGAGGAAGATGAGGGATGT
ATCTTAGTGGTGGTGCTCGATGTTGTTGGAGAAAGATCAAGTATGTACGT
TCTCAACGCGAAGGATTTAACAGAAATTGCACGGGCAGAAGTGCCACAGG
TGGTTCCTCAGGGATTTCACGGCATGTTCAGGGGGCGCTGA
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protein sequence of Ggra8822.t1

>Ggra8822.t1 ID=Ggra8822.t1|Name=Ggra8822.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=147bp
MRLENLMAAKRYGFRKSFLARTEVLNHHMLELPSINSKMERKRHRYVYGV
STSENPFQFGTISKVDVDTGERLARGFRFGIVSEPVFVPDPNGVEEDEGC
ILVVVLDVVGERSSMYVLNAKDLTEIARAEVPQVVPQGFHGMFRGR*
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mRNA from alignment at tig00000860_pilon:244423..244863+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8822.t1 ID=Ggra8822.t1|Name=Ggra8822.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=441bp|location=Sequence derived from alignment at tig00000860_pilon:244423..244863+ (Gracilaria gracilis GNS1m male)
ATGAGGCTGGAAAATCTGATGGCGGCAAAGCGATACGGATTTCGAAAATC
ATTTCTCGCAAGAACAGAGGTTTTGAATCATCACATGCTGGAGCTCCCAT
CCATCAATTCAAAGATGGAGAGGAAACGACACAGGTACGTGTATGGGGTT
TCGACTTCTGAGAATCCGTTCCAGTTCGGAACAATATCTAAGGTGGATGT
TGACACCGGGGAACGATTGGCCCGTGGTTTCAGGTTCGGAATTGTGAGTG
AGCCTGTTTTTGTTCCGGACCCAAATGGGGTCGAGGAAGATGAGGGATGT
ATCTTAGTGGTGGTGCTCGATGTTGTTGGAGAAAGATCAAGTATGTACGT
TCTCAACGCGAAGGATTTAACAGAAATTGCACGGGCAGAAGTGCCACAGG
TGGTTCCTCAGGGATTTCACGGCATGTTCAGGGGGCGCTGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:244423..244863+

>Ggra8822.t1 ID=Ggra8822.t1|Name=Ggra8822.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=441bp|location=Sequence derived from alignment at tig00000860_pilon:244423..244863+ (Gracilaria gracilis GNS1m male)
ATGAGGCTGGAAAATCTGATGGCGGCAAAGCGATACGGATTTCGAAAATC
ATTTCTCGCAAGAACAGAGGTTTTGAATCATCACATGCTGGAGCTCCCAT
CCATCAATTCAAAGATGGAGAGGAAACGACACAGGTACGTGTATGGGGTT
TCGACTTCTGAGAATCCGTTCCAGTTCGGAACAATATCTAAGGTGGATGT
TGACACCGGGGAACGATTGGCCCGTGGTTTCAGGTTCGGAATTGTGAGTG
AGCCTGTTTTTGTTCCGGACCCAAATGGGGTCGAGGAAGATGAGGGATGT
ATCTTAGTGGTGGTGCTCGATGTTGTTGGAGAAAGATCAAGTATGTACGT
TCTCAACGCGAAGGATTTAACAGAAATTGCACGGGCAGAAGTGCCACAGG
TGGTTCCTCAGGGATTTCACGGCATGTTCAGGGGGCGCTGA
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