Ggra8821.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8821.t1
Unique Name	Ggra8821.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	690

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:239270..241339 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	126957.SMAR013046-PA
PFAMs	HEAT
Max annot lvl	33208\|Metazoa
Evalue	1.71e-86
EggNOG OGs	28JXF@1\|root,2QSBS@2759\|Eukaryota,39RXE@33154\|Opisthokonta,3BMGQ@33208\|Metazoa,3D04W@33213\|Bilateria,41Y4B@6656\|Arthropoda
Description	HEAT-like repeat
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8821	Ggra8821	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 239270..241339 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8821.t1.start1	Ggra8821.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 239270..239272 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8821.t1.CDS1	Ggra8821.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 239270..241339 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8821.t1.exon1	Ggra8821.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 239270..241339 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8821.t1.stop1	Ggra8821.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 241337..241339 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8821.t1	Ggra8821.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 239270..241339 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:239270..241339+
coding sequence from alignment at tig00000860_pilon:239270..241339+

mRNA sequence

>Ggra8821.t1 ID=Ggra8821.t1|Name=Ggra8821.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=690bp
MVAPAHIRTMQDAKNPQRPHVDDILLAITSNCHLQRDRVLSNLSLNLESM
PADDINQLKVGLLNVMRSQNPWYSVYGACVAASKLLQAPQPADRLNGEAE
QFPHQLLQLCETLITHSEPRVRETVSQLIQHLAVVEGTTTWTQLAPLLIR
HIEQNFALDESQRLREASRVAARELDEHAADAKLNGLRMVHETEGWKGLE
TMLLCFASLADGCGKYMFVDIGEQSAFKVHGLLKIIQFVDTASLHPNRFV
REAGLKVIKSLAAAAGSVDERFVAELVERCAHVIAKGLQDNWSQVRFAAS
VAARTILSTLRVEDKRKLYPVFLPRMCLNRHYVAEGVRNYSQYTWRHVIA
EDGRLYLERYMEECIAFYESQCLADNHAVREAACQSLGEAALRLKREVVS
PFIGRVIAGLVGCFKDESWPVRDNACQALADVISEFSDIAEDTGSLSETF
ELFRAHLADNIPSVRENCANSFEKASCVFDVHHSVIGTCRLADVVKEFIR
GVESQKESEAETPRASNSQFGASTQLAVDDIHTNQVMYSCGSLAPKLRRG
GGCTDHGFVREKQPWEVSDGGILLWRALMRNAKSRSIVTPLFDMVVETAV
IGSKKKYAGRTRFLNRFVDVLAQIVEWVPKDHVGRQLENLVIIYAQSKNL
SEISSRKAGEYRRCLQRRVGIRDFAAAEKRVKEQGSTSI*

spliced messenger RNA

>Ggra8821.t1 ID=Ggra8821.t1|Name=Ggra8821.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2070bp|location=Sequence derived from alignment at tig00000860_pilon:239270..241339+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGCTCCAGCACACATTCGAACCATGCAGGATGCAAAGAATCCACA
GAGACCGCACGTGGACGACATTCTGCTCGCCATCACGTCCAACTGCCACT
TGCAGCGCGATCGCGTCCTATCCAACCTGTCTCTCAACTTGGAATCCATG
CCAGCAGACGATATCAACCAACTCAAGGTAGGCCTTCTCAATGTAATGCG
CAGTCAGAATCCGTGGTATTCCGTTTATGGTGCTTGTGTGGCAGCTTCGA
AACTCCTCCAAGCGCCTCAACCGGCCGACCGACTCAATGGCGAAGCTGAA
CAGTTTCCCCACCAATTGCTGCAGCTTTGCGAAACGCTCATCACCCACAG
TGAACCACGAGTCCGAGAAACCGTATCTCAACTCATTCAACACCTCGCCG
TTGTGGAAGGTACGACAACATGGACTCAATTGGCCCCGTTGCTCATTCGT
CACATTGAGCAAAACTTTGCTCTTGACGAGTCACAACGGTTGCGGGAGGC
TTCCCGCGTCGCCGCTCGTGAATTGGACGAACACGCAGCAGACGCAAAGC
TCAATGGTTTACGTATGGTACACGAGACTGAGGGTTGGAAGGGTTTGGAG
ACTATGCTGTTGTGCTTTGCATCCCTTGCCGATGGGTGTGGAAAGTACAT
GTTCGTCGATATTGGTGAGCAAAGTGCTTTCAAGGTTCATGGTCTGCTCA
AGATCATACAGTTTGTGGATACTGCCAGTTTGCATCCGAATCGCTTCGTT
AGGGAAGCTGGTTTAAAAGTTATCAAGTCTCTCGCTGCGGCTGCTGGTAG
TGTGGATGAGCGCTTTGTTGCTGAACTTGTGGAACGATGTGCTCACGTCA
TTGCGAAAGGATTGCAGGATAATTGGAGTCAGGTGAGATTTGCGGCATCT
GTGGCAGCAAGAACCATTTTGAGCACTTTGAGAGTTGAAGACAAACGGAA
ACTGTACCCTGTTTTCCTCCCACGCATGTGCCTGAATCGTCATTACGTCG
CGGAAGGTGTTAGAAACTATTCGCAGTACACCTGGCGTCATGTTATCGCT
GAAGATGGCCGTTTATATCTTGAACGATACATGGAGGAATGCATCGCGTT
TTATGAGAGTCAATGTCTGGCTGATAATCATGCTGTTAGAGAAGCGGCGT
GTCAGAGCCTAGGTGAAGCTGCGTTGCGACTGAAACGAGAAGTTGTTTCA
CCTTTTATTGGGAGAGTAATCGCAGGCCTTGTTGGTTGCTTCAAAGATGA
ATCGTGGCCCGTGCGAGATAACGCATGTCAGGCTTTAGCAGATGTTATTT
CCGAGTTTAGCGATATCGCTGAAGACACAGGCAGTCTGTCTGAAACTTTT
GAATTGTTTCGCGCCCATCTAGCAGACAACATCCCTTCCGTACGTGAGAA
TTGTGCGAACTCGTTTGAAAAGGCAAGCTGCGTTTTCGATGTTCATCACA
GCGTTATTGGCACATGTCGCCTAGCCGATGTTGTGAAGGAATTCATCCGC
GGTGTTGAGAGTCAGAAGGAATCTGAAGCAGAAACACCACGGGCTTCCAA
CAGTCAATTTGGAGCTTCGACTCAACTAGCAGTTGATGATATCCACACAA
ACCAAGTCATGTACAGCTGCGGATCGCTGGCACCGAAATTGCGACGAGGT
GGAGGTTGTACGGATCACGGTTTCGTGAGAGAGAAACAACCGTGGGAGGT
GAGCGATGGGGGTATTCTGCTCTGGCGCGCGTTAATGCGGAATGCAAAGT
CAAGAAGCATAGTGACCCCACTCTTTGATATGGTTGTAGAAACTGCTGTT
ATTGGAAGTAAGAAGAAATACGCCGGACGAACTCGATTCCTGAACAGGTT
TGTGGATGTCTTAGCACAAATCGTGGAATGGGTTCCGAAGGATCATGTTG
GAAGACAACTTGAGAACTTGGTGATAATCTATGCACAGAGTAAGAACTTA
AGCGAGATCTCGAGCAGGAAGGCTGGGGAGTATCGTAGATGTCTCCAGCG
AAGAGTGGGGATTCGAGACTTTGCAGCTGCTGAAAAGCGAGTGAAAGAGC
AGGGTTCGACAAGCATCTGA

protein sequence of Ggra8821.t1

>Ggra8821.t1 ID=Ggra8821.t1|Name=Ggra8821.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=690bp
MVAPAHIRTMQDAKNPQRPHVDDILLAITSNCHLQRDRVLSNLSLNLESM
PADDINQLKVGLLNVMRSQNPWYSVYGACVAASKLLQAPQPADRLNGEAE
QFPHQLLQLCETLITHSEPRVRETVSQLIQHLAVVEGTTTWTQLAPLLIR
HIEQNFALDESQRLREASRVAARELDEHAADAKLNGLRMVHETEGWKGLE
TMLLCFASLADGCGKYMFVDIGEQSAFKVHGLLKIIQFVDTASLHPNRFV
REAGLKVIKSLAAAAGSVDERFVAELVERCAHVIAKGLQDNWSQVRFAAS
VAARTILSTLRVEDKRKLYPVFLPRMCLNRHYVAEGVRNYSQYTWRHVIA
EDGRLYLERYMEECIAFYESQCLADNHAVREAACQSLGEAALRLKREVVS
PFIGRVIAGLVGCFKDESWPVRDNACQALADVISEFSDIAEDTGSLSETF
ELFRAHLADNIPSVRENCANSFEKASCVFDVHHSVIGTCRLADVVKEFIR
GVESQKESEAETPRASNSQFGASTQLAVDDIHTNQVMYSCGSLAPKLRRG
GGCTDHGFVREKQPWEVSDGGILLWRALMRNAKSRSIVTPLFDMVVETAV
IGSKKKYAGRTRFLNRFVDVLAQIVEWVPKDHVGRQLENLVIIYAQSKNL
SEISSRKAGEYRRCLQRRVGIRDFAAAEKRVKEQGSTSI*

mRNA from alignment at tig00000860_pilon:239270..241339+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8821.t1 ID=Ggra8821.t1|Name=Ggra8821.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2070bp|location=Sequence derived from alignment at tig00000860_pilon:239270..241339+ (Gracilaria gracilis GNS1m male)
ATGGTTGCTCCAGCACACATTCGAACCATGCAGGATGCAAAGAATCCACA
GAGACCGCACGTGGACGACATTCTGCTCGCCATCACGTCCAACTGCCACT
TGCAGCGCGATCGCGTCCTATCCAACCTGTCTCTCAACTTGGAATCCATG
CCAGCAGACGATATCAACCAACTCAAGGTAGGCCTTCTCAATGTAATGCG
CAGTCAGAATCCGTGGTATTCCGTTTATGGTGCTTGTGTGGCAGCTTCGA
AACTCCTCCAAGCGCCTCAACCGGCCGACCGACTCAATGGCGAAGCTGAA
CAGTTTCCCCACCAATTGCTGCAGCTTTGCGAAACGCTCATCACCCACAG
TGAACCACGAGTCCGAGAAACCGTATCTCAACTCATTCAACACCTCGCCG
TTGTGGAAGGTACGACAACATGGACTCAATTGGCCCCGTTGCTCATTCGT
CACATTGAGCAAAACTTTGCTCTTGACGAGTCACAACGGTTGCGGGAGGC
TTCCCGCGTCGCCGCTCGTGAATTGGACGAACACGCAGCAGACGCAAAGC
TCAATGGTTTACGTATGGTACACGAGACTGAGGGTTGGAAGGGTTTGGAG
ACTATGCTGTTGTGCTTTGCATCCCTTGCCGATGGGTGTGGAAAGTACAT
GTTCGTCGATATTGGTGAGCAAAGTGCTTTCAAGGTTCATGGTCTGCTCA
AGATCATACAGTTTGTGGATACTGCCAGTTTGCATCCGAATCGCTTCGTT
AGGGAAGCTGGTTTAAAAGTTATCAAGTCTCTCGCTGCGGCTGCTGGTAG
TGTGGATGAGCGCTTTGTTGCTGAACTTGTGGAACGATGTGCTCACGTCA
TTGCGAAAGGATTGCAGGATAATTGGAGTCAGGTGAGATTTGCGGCATCT
GTGGCAGCAAGAACCATTTTGAGCACTTTGAGAGTTGAAGACAAACGGAA
ACTGTACCCTGTTTTCCTCCCACGCATGTGCCTGAATCGTCATTACGTCG
CGGAAGGTGTTAGAAACTATTCGCAGTACACCTGGCGTCATGTTATCGCT
GAAGATGGCCGTTTATATCTTGAACGATACATGGAGGAATGCATCGCGTT
TTATGAGAGTCAATGTCTGGCTGATAATCATGCTGTTAGAGAAGCGGCGT
GTCAGAGCCTAGGTGAAGCTGCGTTGCGACTGAAACGAGAAGTTGTTTCA
CCTTTTATTGGGAGAGTAATCGCAGGCCTTGTTGGTTGCTTCAAAGATGA
ATCGTGGCCCGTGCGAGATAACGCATGTCAGGCTTTAGCAGATGTTATTT
CCGAGTTTAGCGATATCGCTGAAGACACAGGCAGTCTGTCTGAAACTTTT
GAATTGTTTCGCGCCCATCTAGCAGACAACATCCCTTCCGTACGTGAGAA
TTGTGCGAACTCGTTTGAAAAGGCAAGCTGCGTTTTCGATGTTCATCACA
GCGTTATTGGCACATGTCGCCTAGCCGATGTTGTGAAGGAATTCATCCGC
GGTGTTGAGAGTCAGAAGGAATCTGAAGCAGAAACACCACGGGCTTCCAA
CAGTCAATTTGGAGCTTCGACTCAACTAGCAGTTGATGATATCCACACAA
ACCAAGTCATGTACAGCTGCGGATCGCTGGCACCGAAATTGCGACGAGGT
GGAGGTTGTACGGATCACGGTTTCGTGAGAGAGAAACAACCGTGGGAGGT
GAGCGATGGGGGTATTCTGCTCTGGCGCGCGTTAATGCGGAATGCAAAGT
CAAGAAGCATAGTGACCCCACTCTTTGATATGGTTGTAGAAACTGCTGTT
ATTGGAAGTAAGAAGAAATACGCCGGACGAACTCGATTCCTGAACAGGTT
TGTGGATGTCTTAGCACAAATCGTGGAATGGGTTCCGAAGGATCATGTTG
GAAGACAACTTGAGAACTTGGTGATAATCTATGCACAGAGTAAGAACTTA
AGCGAGATCTCGAGCAGGAAGGCTGGGGAGTATCGTAGATGTCTCCAGCG
AAGAGTGGGGATTCGAGACTTTGCAGCTGCTGAAAAGCGAGTGAAAGAGC
AGGGTTCGACAAGCATCTGA

Coding sequence (CDS) from alignment at tig00000860_pilon:239270..241339+

>Ggra8821.t1 ID=Ggra8821.t1|Name=Ggra8821.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2070bp|location=Sequence derived from alignment at tig00000860_pilon:239270..241339+ (Gracilaria gracilis GNS1m male)
ATGGTTGCTCCAGCACACATTCGAACCATGCAGGATGCAAAGAATCCACA
GAGACCGCACGTGGACGACATTCTGCTCGCCATCACGTCCAACTGCCACT
TGCAGCGCGATCGCGTCCTATCCAACCTGTCTCTCAACTTGGAATCCATG
CCAGCAGACGATATCAACCAACTCAAGGTAGGCCTTCTCAATGTAATGCG
CAGTCAGAATCCGTGGTATTCCGTTTATGGTGCTTGTGTGGCAGCTTCGA
AACTCCTCCAAGCGCCTCAACCGGCCGACCGACTCAATGGCGAAGCTGAA
CAGTTTCCCCACCAATTGCTGCAGCTTTGCGAAACGCTCATCACCCACAG
TGAACCACGAGTCCGAGAAACCGTATCTCAACTCATTCAACACCTCGCCG
TTGTGGAAGGTACGACAACATGGACTCAATTGGCCCCGTTGCTCATTCGT
CACATTGAGCAAAACTTTGCTCTTGACGAGTCACAACGGTTGCGGGAGGC
TTCCCGCGTCGCCGCTCGTGAATTGGACGAACACGCAGCAGACGCAAAGC
TCAATGGTTTACGTATGGTACACGAGACTGAGGGTTGGAAGGGTTTGGAG
ACTATGCTGTTGTGCTTTGCATCCCTTGCCGATGGGTGTGGAAAGTACAT
GTTCGTCGATATTGGTGAGCAAAGTGCTTTCAAGGTTCATGGTCTGCTCA
AGATCATACAGTTTGTGGATACTGCCAGTTTGCATCCGAATCGCTTCGTT
AGGGAAGCTGGTTTAAAAGTTATCAAGTCTCTCGCTGCGGCTGCTGGTAG
TGTGGATGAGCGCTTTGTTGCTGAACTTGTGGAACGATGTGCTCACGTCA
TTGCGAAAGGATTGCAGGATAATTGGAGTCAGGTGAGATTTGCGGCATCT
GTGGCAGCAAGAACCATTTTGAGCACTTTGAGAGTTGAAGACAAACGGAA
ACTGTACCCTGTTTTCCTCCCACGCATGTGCCTGAATCGTCATTACGTCG
CGGAAGGTGTTAGAAACTATTCGCAGTACACCTGGCGTCATGTTATCGCT
GAAGATGGCCGTTTATATCTTGAACGATACATGGAGGAATGCATCGCGTT
TTATGAGAGTCAATGTCTGGCTGATAATCATGCTGTTAGAGAAGCGGCGT
GTCAGAGCCTAGGTGAAGCTGCGTTGCGACTGAAACGAGAAGTTGTTTCA
CCTTTTATTGGGAGAGTAATCGCAGGCCTTGTTGGTTGCTTCAAAGATGA
ATCGTGGCCCGTGCGAGATAACGCATGTCAGGCTTTAGCAGATGTTATTT
CCGAGTTTAGCGATATCGCTGAAGACACAGGCAGTCTGTCTGAAACTTTT
GAATTGTTTCGCGCCCATCTAGCAGACAACATCCCTTCCGTACGTGAGAA
TTGTGCGAACTCGTTTGAAAAGGCAAGCTGCGTTTTCGATGTTCATCACA
GCGTTATTGGCACATGTCGCCTAGCCGATGTTGTGAAGGAATTCATCCGC
GGTGTTGAGAGTCAGAAGGAATCTGAAGCAGAAACACCACGGGCTTCCAA
CAGTCAATTTGGAGCTTCGACTCAACTAGCAGTTGATGATATCCACACAA
ACCAAGTCATGTACAGCTGCGGATCGCTGGCACCGAAATTGCGACGAGGT
GGAGGTTGTACGGATCACGGTTTCGTGAGAGAGAAACAACCGTGGGAGGT
GAGCGATGGGGGTATTCTGCTCTGGCGCGCGTTAATGCGGAATGCAAAGT
CAAGAAGCATAGTGACCCCACTCTTTGATATGGTTGTAGAAACTGCTGTT
ATTGGAAGTAAGAAGAAATACGCCGGACGAACTCGATTCCTGAACAGGTT
TGTGGATGTCTTAGCACAAATCGTGGAATGGGTTCCGAAGGATCATGTTG
GAAGACAACTTGAGAACTTGGTGATAATCTATGCACAGAGTAAGAACTTA
AGCGAGATCTCGAGCAGGAAGGCTGGGGAGTATCGTAGATGTCTCCAGCG
AAGAGTGGGGATTCGAGACTTTGCAGCTGCTGAAAAGCGAGTGAAAGAGC
AGGGTTCGACAAGCATCTGA