Ggra882.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra882.t1
Unique Name	Ggra882.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	725

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000212_pilon	contig	tig00000212_pilon:49132..51306 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706938.1
PFAMs	Dynamin_M,Dynamin_N,GED
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01528,ko:K17065
KEGG Pathway	ko04072,ko04139,ko04144,ko04214,ko04217,ko04621,ko04668,ko04721,ko04961,ko05100,map04072,map04139,map04144,map04214,map04217,map04621,map04668,map04721,map04961,map05100
Evalue	2.4e-214
EggNOG OGs	COG0699@1\|root,KOG0446@2759\|Eukaryota
EC	3.6.5.5
Description	mitochondrial fission
COG category	I
BRITE	ko00000,ko00001,ko01000,ko03029,ko04131,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra882	Ggra882	Gracilaria gracilis GNS1m male	gene	tig00000212_pilon 49132..51306 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra882.t1.start1	Ggra882.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000212_pilon 49132..49134 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra882.t1.CDS1	Ggra882.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000212_pilon 49132..51306 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra882.t1.exon1	Ggra882.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000212_pilon 49132..51306 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra882.t1.stop1	Ggra882.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000212_pilon 51304..51306 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra882.t1	Ggra882.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000212_pilon 49132..51306 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000212_pilon:49132..51306+
coding sequence from alignment at tig00000212_pilon:49132..51306+

mRNA sequence

>Ggra882.t1 ID=Ggra882.t1|Name=Ggra882.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=725bp
MDRLLPVVNKLHNIFQRCGLADPIDLPQIVVVGAQSSGKSSVLESIVGFD
FLPRGSGVVTRSPILIQLNKVRTTSGNGGSQRWVEFLHAPERRFETEEEI
QTEIIRETERVAGKNKKLTPTAMIMKVFSTEVVDLTLIDLPGLTKVPVGD
QPPDIEKLVRAMIYSYIEKSNTIILAVHPANTDLATSDALQMARRVDPHG
LRTLGVITKLDLMDAGTNALDMLLGRIIPLRRGYVGVVNRSQADLDTKAT
VIQSRAAEKTFFQSHPVYAPYAAKMGSQYLAEMLSTMLMEHIRQVLPSIR
AKITMQLSEVREQLVSLGPELGGGDDSSGTLLHLLTNYASSFSDAIDGRP
KAPIATSELAGGARISFIFHDRFGRELARMDPFDSLGPDEIRTALRNATG
HRTPLFIPESAFEMLVKRQIGMFLEPALACVDMVYDELTRLAEVIESPEL
ARFHRLRIEVSETTLKLLRERKSPTIEMIHNLVEMEMSYINTWHPDFVGG
KQALAAIVEHAMTNRGPTSLPETTGSDVGLLGVNRGAKYGHREVHQDAWV
EKNLLGQQSNNNQSRSSSNGVSGDVGRGPDPYLATSRRRGRTGTTIRRGL
QDSFAMSEAQNIPASGQVRISGLYALSDDERQELDILRTLLESYFNIVRK
RLQDMVPKAIITFLVNKSKDSLQSVLVKKLYKPNALERLMVESPETTQRR
KDMKAVEALLEQALSEVNEIRDVH*

spliced messenger RNA

>Ggra882.t1 ID=Ggra882.t1|Name=Ggra882.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2175bp|location=Sequence derived from alignment at tig00000212_pilon:49132..51306+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atggatcgcttgctacccgttgtgaacaagctccacaatatatttcagag
atgcggcttagcagacccaattgaccttcctcagatcgtcgttgtcGGAG
CCCAGTCGTCCGGAAAAAGCTCTGTTCTTGAGTCGATTGTCGGTTTCGAC
TTCCTTCCTCGAGGCTCGGGAGTCGTGACGCGGAGCCCAATTCTCATTCA
ACTTAACAAGGTGAGAACGACTAGCGGAAACGGAGGCTCTCAACGATGGG
TTGAGTTTCTGCATGCCCCGGAGAGAAGATTCGAGACTGAGGAAGAAATT
CAGACAGAAATCATCCGCGAAACAGAACGCGTCGCGGGAAAGAACAAGAA
GCTCACGCCCACTGCCATGATCATGAAGGTTTTTTCCACCGAAGTCGTCG
ACTTGACGCTTATTGACCTACCCGGTCTCACAAAAGTTCCAGTTGGTGAT
CAGCCACCAGACATCGAGAAACTTGTGCGGGCCATGATTTATTCTTACAT
TGAAAAGTCGAACACGATCATCCTCGCGGTTCATCCGGCCAACACGGACC
TAGCTACATCTGATGCTTTGCAAATGGCGCGACGCGTTGATCCACACGGT
CTAAGAACCCTAGGTGTCATTACTAAGCTTGATCTTATGGACGCCGGTAC
TAACGCTTTGGATATGCTTCTTGGACGAATAATTCCTCTTCGCCGAGGCT
ATGTGGGAGTTGTGAATAGGTCCCAGGCCGACCTGGACACAAAAGCAACA
GTGATTCAATCCAGAGCAGCAGAGAAGACATTCTTTCAAAGCCATCCCGT
TTATGCGCCGTACGCAGCTAAAATGGGTTCCCAGTATCTTGCGGAGATGT
TGAGTACCATGTTGATGGAGCATATACGGCAGGTCTTGCCATCCATTCGA
GCCAAGATAACCATGCAACTTTCAGAGGTAAGAGAGCAACTCGTCTCCCT
CGGTCCGGAACTTGGTGGGGGCGACGATTCAAGTGGCACACTGCTCCATC
TTCTTACGAACTACGCGTCTAGCTTCTCGGATGCCATTGACGGTCGCCCA
AAGGCCCCAATTGCGACTAGTGAGCTCGCAGGTGGTGCCCGTATCAGCTT
CATATTTCACGATCGTTTCGGAAGGGAATTAGCCAGAATGGACCCATTTG
ATTCTCTAGGGCCTGATGAGATCAGAACGGCTCTTAGGAATGCCACTGGA
CATCGCACCCCCTTGTTCATCCCAGAATCGGCCTTCGAAATGCTTGTCAA
GCGGCAAATCGGCATGTTCTTGGAACCAGCTCTAGCTTGTGTGGATATGG
TGTACGACGAACTAACTCGTTTAGCAGAAGTTATTGAGAGCCCCGAACTG
GCCAGATTTCACCGTCTTCGGATAGAAGTGTCTGAAACCACATTGAAACT
ACTAAGAGAGCGAAAGTCACCAACCATAGAGATGATTCACAATCTAGTCG
AAATGGAGATGAGCTACATAAATACATGGCATCCAGACTTTGTGGGTGGG
AAGCAAGCCTTGGCCGCTATTGTAGAACACGCCATGACGAACAGAGGACC
GACCTCATTGCCAGAGACAACTGGTAGTGATGTTGGCTTACTTGGAGTGA
ATAGAGGGGCAAAGTACGGTCATCGTGAAGTCCATCAAGATGCTTGGGTG
GAAAAGAATTTGTTAGGGCAACAATCAAACAACAACCAATCTCGGAGTTC
TTCAAACGGCGTCTCAGGCGATGTTGGTCGTGGTCCGGATCCTTACCTTG
CGACGAGTAGAAGACGAGGACGTACCGGAACAACTATTAGAAGAGGATTA
CAAGATAGTTTCGCAATGTCAGAGGCCCAGAACATCCCAGCCTCCGGCCA
GGTTCGGATTTCTGGACTTTATGCATTATCAGATGACGAACGGCAGGAGC
TTGATATCTTGCGGACCTTATTGGAGAGCTATTTCAACATCGTAAGAAAA
CGACTACAAGATATGGTTCCTAAAGCGATCATTACATTTTTGGTGAACAA
ATCAAAGGACTCGTTGCAGTCTGTATTAGTTAAGAAGCTGTACAAGCCAA
ATGCTCTTGAAAGATTGATGGTCGAATCTCCGGAAACTACGCAAAGGCGA
AAGGATATGAAAGCAGTAGAAGCTCTGTTAGAGCAAGCATTGAGTGAAGT
CAATGAAATCCGAGATGTACACTAA

protein sequence of Ggra882.t1

>Ggra882.t1 ID=Ggra882.t1|Name=Ggra882.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=725bp
MDRLLPVVNKLHNIFQRCGLADPIDLPQIVVVGAQSSGKSSVLESIVGFD
FLPRGSGVVTRSPILIQLNKVRTTSGNGGSQRWVEFLHAPERRFETEEEI
QTEIIRETERVAGKNKKLTPTAMIMKVFSTEVVDLTLIDLPGLTKVPVGD
QPPDIEKLVRAMIYSYIEKSNTIILAVHPANTDLATSDALQMARRVDPHG
LRTLGVITKLDLMDAGTNALDMLLGRIIPLRRGYVGVVNRSQADLDTKAT
VIQSRAAEKTFFQSHPVYAPYAAKMGSQYLAEMLSTMLMEHIRQVLPSIR
AKITMQLSEVREQLVSLGPELGGGDDSSGTLLHLLTNYASSFSDAIDGRP
KAPIATSELAGGARISFIFHDRFGRELARMDPFDSLGPDEIRTALRNATG
HRTPLFIPESAFEMLVKRQIGMFLEPALACVDMVYDELTRLAEVIESPEL
ARFHRLRIEVSETTLKLLRERKSPTIEMIHNLVEMEMSYINTWHPDFVGG
KQALAAIVEHAMTNRGPTSLPETTGSDVGLLGVNRGAKYGHREVHQDAWV
EKNLLGQQSNNNQSRSSSNGVSGDVGRGPDPYLATSRRRGRTGTTIRRGL
QDSFAMSEAQNIPASGQVRISGLYALSDDERQELDILRTLLESYFNIVRK
RLQDMVPKAIITFLVNKSKDSLQSVLVKKLYKPNALERLMVESPETTQRR
KDMKAVEALLEQALSEVNEIRDVH*

mRNA from alignment at tig00000212_pilon:49132..51306+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra882.t1 ID=Ggra882.t1|Name=Ggra882.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2175bp|location=Sequence derived from alignment at tig00000212_pilon:49132..51306+ (Gracilaria gracilis GNS1m male)
atggatcgcttgctacccgttgtgaacaagctccacaatatatttcagag
atgcggcttagcagacccaattgaccttcctcagatcgtcgttgtcGGAG
CCCAGTCGTCCGGAAAAAGCTCTGTTCTTGAGTCGATTGTCGGTTTCGAC
TTCCTTCCTCGAGGCTCGGGAGTCGTGACGCGGAGCCCAATTCTCATTCA
ACTTAACAAGGTGAGAACGACTAGCGGAAACGGAGGCTCTCAACGATGGG
TTGAGTTTCTGCATGCCCCGGAGAGAAGATTCGAGACTGAGGAAGAAATT
CAGACAGAAATCATCCGCGAAACAGAACGCGTCGCGGGAAAGAACAAGAA
GCTCACGCCCACTGCCATGATCATGAAGGTTTTTTCCACCGAAGTCGTCG
ACTTGACGCTTATTGACCTACCCGGTCTCACAAAAGTTCCAGTTGGTGAT
CAGCCACCAGACATCGAGAAACTTGTGCGGGCCATGATTTATTCTTACAT
TGAAAAGTCGAACACGATCATCCTCGCGGTTCATCCGGCCAACACGGACC
TAGCTACATCTGATGCTTTGCAAATGGCGCGACGCGTTGATCCACACGGT
CTAAGAACCCTAGGTGTCATTACTAAGCTTGATCTTATGGACGCCGGTAC
TAACGCTTTGGATATGCTTCTTGGACGAATAATTCCTCTTCGCCGAGGCT
ATGTGGGAGTTGTGAATAGGTCCCAGGCCGACCTGGACACAAAAGCAACA
GTGATTCAATCCAGAGCAGCAGAGAAGACATTCTTTCAAAGCCATCCCGT
TTATGCGCCGTACGCAGCTAAAATGGGTTCCCAGTATCTTGCGGAGATGT
TGAGTACCATGTTGATGGAGCATATACGGCAGGTCTTGCCATCCATTCGA
GCCAAGATAACCATGCAACTTTCAGAGGTAAGAGAGCAACTCGTCTCCCT
CGGTCCGGAACTTGGTGGGGGCGACGATTCAAGTGGCACACTGCTCCATC
TTCTTACGAACTACGCGTCTAGCTTCTCGGATGCCATTGACGGTCGCCCA
AAGGCCCCAATTGCGACTAGTGAGCTCGCAGGTGGTGCCCGTATCAGCTT
CATATTTCACGATCGTTTCGGAAGGGAATTAGCCAGAATGGACCCATTTG
ATTCTCTAGGGCCTGATGAGATCAGAACGGCTCTTAGGAATGCCACTGGA
CATCGCACCCCCTTGTTCATCCCAGAATCGGCCTTCGAAATGCTTGTCAA
GCGGCAAATCGGCATGTTCTTGGAACCAGCTCTAGCTTGTGTGGATATGG
TGTACGACGAACTAACTCGTTTAGCAGAAGTTATTGAGAGCCCCGAACTG
GCCAGATTTCACCGTCTTCGGATAGAAGTGTCTGAAACCACATTGAAACT
ACTAAGAGAGCGAAAGTCACCAACCATAGAGATGATTCACAATCTAGTCG
AAATGGAGATGAGCTACATAAATACATGGCATCCAGACTTTGTGGGTGGG
AAGCAAGCCTTGGCCGCTATTGTAGAACACGCCATGACGAACAGAGGACC
GACCTCATTGCCAGAGACAACTGGTAGTGATGTTGGCTTACTTGGAGTGA
ATAGAGGGGCAAAGTACGGTCATCGTGAAGTCCATCAAGATGCTTGGGTG
GAAAAGAATTTGTTAGGGCAACAATCAAACAACAACCAATCTCGGAGTTC
TTCAAACGGCGTCTCAGGCGATGTTGGTCGTGGTCCGGATCCTTACCTTG
CGACGAGTAGAAGACGAGGACGTACCGGAACAACTATTAGAAGAGGATTA
CAAGATAGTTTCGCAATGTCAGAGGCCCAGAACATCCCAGCCTCCGGCCA
GGTTCGGATTTCTGGACTTTATGCATTATCAGATGACGAACGGCAGGAGC
TTGATATCTTGCGGACCTTATTGGAGAGCTATTTCAACATCGTAAGAAAA
CGACTACAAGATATGGTTCCTAAAGCGATCATTACATTTTTGGTGAACAA
ATCAAAGGACTCGTTGCAGTCTGTATTAGTTAAGAAGCTGTACAAGCCAA
ATGCTCTTGAAAGATTGATGGTCGAATCTCCGGAAACTACGCAAAGGCGA
AAGGATATGAAAGCAGTAGAAGCTCTGTTAGAGCAAGCATTGAGTGAAGT
CAATGAAATCCGAGATGTACACTAA

Coding sequence (CDS) from alignment at tig00000212_pilon:49132..51306+

>Ggra882.t1 ID=Ggra882.t1|Name=Ggra882.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2175bp|location=Sequence derived from alignment at tig00000212_pilon:49132..51306+ (Gracilaria gracilis GNS1m male)
atggatcgcttgctacccgttgtgaacaagctccacaatatatttcagag
atgcggcttagcagacccaattgaccttcctcagatcgtcgttgtcGGAG
CCCAGTCGTCCGGAAAAAGCTCTGTTCTTGAGTCGATTGTCGGTTTCGAC
TTCCTTCCTCGAGGCTCGGGAGTCGTGACGCGGAGCCCAATTCTCATTCA
ACTTAACAAGGTGAGAACGACTAGCGGAAACGGAGGCTCTCAACGATGGG
TTGAGTTTCTGCATGCCCCGGAGAGAAGATTCGAGACTGAGGAAGAAATT
CAGACAGAAATCATCCGCGAAACAGAACGCGTCGCGGGAAAGAACAAGAA
GCTCACGCCCACTGCCATGATCATGAAGGTTTTTTCCACCGAAGTCGTCG
ACTTGACGCTTATTGACCTACCCGGTCTCACAAAAGTTCCAGTTGGTGAT
CAGCCACCAGACATCGAGAAACTTGTGCGGGCCATGATTTATTCTTACAT
TGAAAAGTCGAACACGATCATCCTCGCGGTTCATCCGGCCAACACGGACC
TAGCTACATCTGATGCTTTGCAAATGGCGCGACGCGTTGATCCACACGGT
CTAAGAACCCTAGGTGTCATTACTAAGCTTGATCTTATGGACGCCGGTAC
TAACGCTTTGGATATGCTTCTTGGACGAATAATTCCTCTTCGCCGAGGCT
ATGTGGGAGTTGTGAATAGGTCCCAGGCCGACCTGGACACAAAAGCAACA
GTGATTCAATCCAGAGCAGCAGAGAAGACATTCTTTCAAAGCCATCCCGT
TTATGCGCCGTACGCAGCTAAAATGGGTTCCCAGTATCTTGCGGAGATGT
TGAGTACCATGTTGATGGAGCATATACGGCAGGTCTTGCCATCCATTCGA
GCCAAGATAACCATGCAACTTTCAGAGGTAAGAGAGCAACTCGTCTCCCT
CGGTCCGGAACTTGGTGGGGGCGACGATTCAAGTGGCACACTGCTCCATC
TTCTTACGAACTACGCGTCTAGCTTCTCGGATGCCATTGACGGTCGCCCA
AAGGCCCCAATTGCGACTAGTGAGCTCGCAGGTGGTGCCCGTATCAGCTT
CATATTTCACGATCGTTTCGGAAGGGAATTAGCCAGAATGGACCCATTTG
ATTCTCTAGGGCCTGATGAGATCAGAACGGCTCTTAGGAATGCCACTGGA
CATCGCACCCCCTTGTTCATCCCAGAATCGGCCTTCGAAATGCTTGTCAA
GCGGCAAATCGGCATGTTCTTGGAACCAGCTCTAGCTTGTGTGGATATGG
TGTACGACGAACTAACTCGTTTAGCAGAAGTTATTGAGAGCCCCGAACTG
GCCAGATTTCACCGTCTTCGGATAGAAGTGTCTGAAACCACATTGAAACT
ACTAAGAGAGCGAAAGTCACCAACCATAGAGATGATTCACAATCTAGTCG
AAATGGAGATGAGCTACATAAATACATGGCATCCAGACTTTGTGGGTGGG
AAGCAAGCCTTGGCCGCTATTGTAGAACACGCCATGACGAACAGAGGACC
GACCTCATTGCCAGAGACAACTGGTAGTGATGTTGGCTTACTTGGAGTGA
ATAGAGGGGCAAAGTACGGTCATCGTGAAGTCCATCAAGATGCTTGGGTG
GAAAAGAATTTGTTAGGGCAACAATCAAACAACAACCAATCTCGGAGTTC
TTCAAACGGCGTCTCAGGCGATGTTGGTCGTGGTCCGGATCCTTACCTTG
CGACGAGTAGAAGACGAGGACGTACCGGAACAACTATTAGAAGAGGATTA
CAAGATAGTTTCGCAATGTCAGAGGCCCAGAACATCCCAGCCTCCGGCCA
GGTTCGGATTTCTGGACTTTATGCATTATCAGATGACGAACGGCAGGAGC
TTGATATCTTGCGGACCTTATTGGAGAGCTATTTCAACATCGTAAGAAAA
CGACTACAAGATATGGTTCCTAAAGCGATCATTACATTTTTGGTGAACAA
ATCAAAGGACTCGTTGCAGTCTGTATTAGTTAAGAAGCTGTACAAGCCAA
ATGCTCTTGAAAGATTGATGGTCGAATCTCCGGAAACTACGCAAAGGCGA
AAGGATATGAAAGCAGTAGAAGCTCTGTTAGAGCAAGCATTGAGTGAAGT
CAATGAAATCCGAGATGTACACTAA