Ggra8813.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8813.t1
Unique NameGgra8813.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length489
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:196226..197692 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8813Ggra8813Gracilaria gracilis GNS1m malegenetig00000860_pilon 196226..197692 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8813.t1.stop1Ggra8813.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 196226..196228 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8813.t1.CDS1Ggra8813.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 196226..197692 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8813.t1.exon1Ggra8813.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 196226..197692 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8813.t1.start1Ggra8813.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 197690..197692 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8813.t1Ggra8813.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 196226..197692 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8813.t1 ID=Ggra8813.t1|Name=Ggra8813.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=489bp
MSGTDSRFAALSGSSLHEALGKLVTKRFESTDVMSKVSIIPDSVECHTLS
PDGTLLAVFFRSYPMMRVYELKTKRQLLVLRMGMMPGVLDMAFSSDSSIF
AIYGDRAYLIHRFTKVGGEDGVWHVERIRSIERRYSVNVGIMGKEVGISF
SEDMNHVVFQEVSVDLRRGKGLGIKVKYEDVDISHPRDVYDQEQGVTTTI
IRWKENNSDRNVTYEARRFRLVDFTFTAHPNRTYIPPGCVSKMFGVVISV
EKSLNRLIFARCETAGKLIEARPSPCGNYLFELRKQWGEGHVVRKISMND
LKDVDISALPILRSGRPMKVADFLINGNIAVVIFAETINCRSSAFADSFN
DSFSTFTPHGWAVYDTRHSGSFYTVLKQNRNTEYQADKGSITLSSDGQLI
GFIPVRQEKHSDCELHIFDVSSGRLAQVRKIRTACSSPDNVHITIAPERC
VCRHVIGAGLEALVSTSTGTPGAMSFAWSSRRMTKESS*
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spliced messenger RNA

>Ggra8813.t1 ID=Ggra8813.t1|Name=Ggra8813.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1467bp|location=Sequence derived from alignment at tig00000860_pilon:196226..197692- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGGCACAGACAGTCGATTTGCAGCTCTCTCGGGATCATCTCTGCA
TGAAGCACTAGGTAAACTGGTGACCAAACGCTTCGAATCAACAGATGTCA
TGTCCAAGGTTTCCATAATCCCGGATAGTGTGGAATGCCATACACTTAGT
CCCGACGGAACACTTTTGGCGGTGTTCTTCAGGTCATATCCTATGATGCG
GGTGTACGAGTTGAAAACAAAACGGCAACTACTTGTTCTTCGCATGGGCA
TGATGCCTGGAGTCTTGGATATGGCGTTTTCGTCGGACAGCTCAATATTC
GCTATCTATGGCGATCGCGCCTATTTGATCCATCGCTTCACAAAAGTCGG
AGGTGAGGACGGGGTTTGGCACGTGGAGCGAATAAGGTCCATTGAACGAA
GGTACAGCGTGAACGTAGGGATCATGGGCAAAGAAGTTGGCATAAGTTTC
TCAGAGGATATGAACCATGTCGTTTTTCAGGAAGTGTCGGTAGATCTCAG
ACGAGGAAAAGGACTCGGGATAAAGGTGAAGTATGAGGATGTGGATATTT
CGCATCCCAGAGACGTCTATGATCAAGAACAGGGTGTCACGACGACCATT
ATTCGGTGGAAGGAGAATAACTCTGACAGGAACGTTACCTACGAAGCTCG
TCGATTTCGGCTTGTCGATTTCACTTTTACCGCGCACCCTAACAGAACGT
ACATACCCCCAGGCTGCGTGAGCAAGATGTTTGGGGTTGTGATTTCTGTG
GAGAAGAGTCTCAACCGCTTGATATTTGCTCGTTGTGAAACTGCTGGAAA
GCTTATCGAAGCAAGGCCAAGTCCTTGCGGGAATTATTTGTTTGAGCTCA
GAAAACAATGGGGTGAAGGTCACGTCGTGCGGAAGATCAGCATGAATGAT
TTGAAGGACGTCGATATATCCGCACTACCCATCCTTCGTTCTGGTAGGCC
AATGAAAGTTGCGGACTTTCTTATCAATGGGAACATTGCAGTAGTGATCT
TCGCGGAGACGATTAACTGTCGGAGCAGTGCGTTTGCTGATTCGTTCAAC
GATTCTTTCTCCACTTTCACGCCACACGGCTGGGCAGTGTATGACACTCG
ACATTCAGGATCATTCTACACAGTTCTCAAGCAAAATAGAAACACTGAAT
ATCAAGCGGACAAAGGAAGTATCACATTAAGCTCTGATGGTCAGCTTATT
GGTTTCATCCCGGTTCGACAGGAAAAGCATTCGGACTGTGAGTTGCATAT
TTTTGACGTTTCAAGTGGTCGCCTAGCCCAGGTTCGAAAGATAAGAACAG
CATGTTCTTCTCCAGACAATGTGCACATAACAATTGCCCCGGAACGATGT
GTATGTAGGCATGTAATCGGTGCGGGTCTTGAGGCATTAGTCTCAACCTC
TACGGGAACCCCTGGAGCAATGTCATTTGCTTGGTCGTCTCGCAGAATGA
CAAAAGAGTCGTCTTAG
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protein sequence of Ggra8813.t1

>Ggra8813.t1 ID=Ggra8813.t1|Name=Ggra8813.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=489bp
MSGTDSRFAALSGSSLHEALGKLVTKRFESTDVMSKVSIIPDSVECHTLS
PDGTLLAVFFRSYPMMRVYELKTKRQLLVLRMGMMPGVLDMAFSSDSSIF
AIYGDRAYLIHRFTKVGGEDGVWHVERIRSIERRYSVNVGIMGKEVGISF
SEDMNHVVFQEVSVDLRRGKGLGIKVKYEDVDISHPRDVYDQEQGVTTTI
IRWKENNSDRNVTYEARRFRLVDFTFTAHPNRTYIPPGCVSKMFGVVISV
EKSLNRLIFARCETAGKLIEARPSPCGNYLFELRKQWGEGHVVRKISMND
LKDVDISALPILRSGRPMKVADFLINGNIAVVIFAETINCRSSAFADSFN
DSFSTFTPHGWAVYDTRHSGSFYTVLKQNRNTEYQADKGSITLSSDGQLI
GFIPVRQEKHSDCELHIFDVSSGRLAQVRKIRTACSSPDNVHITIAPERC
VCRHVIGAGLEALVSTSTGTPGAMSFAWSSRRMTKESS*
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mRNA from alignment at tig00000860_pilon:196226..197692-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8813.t1 ID=Ggra8813.t1|Name=Ggra8813.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1467bp|location=Sequence derived from alignment at tig00000860_pilon:196226..197692- (Gracilaria gracilis GNS1m male)
ATGTCTGGCACAGACAGTCGATTTGCAGCTCTCTCGGGATCATCTCTGCA
TGAAGCACTAGGTAAACTGGTGACCAAACGCTTCGAATCAACAGATGTCA
TGTCCAAGGTTTCCATAATCCCGGATAGTGTGGAATGCCATACACTTAGT
CCCGACGGAACACTTTTGGCGGTGTTCTTCAGGTCATATCCTATGATGCG
GGTGTACGAGTTGAAAACAAAACGGCAACTACTTGTTCTTCGCATGGGCA
TGATGCCTGGAGTCTTGGATATGGCGTTTTCGTCGGACAGCTCAATATTC
GCTATCTATGGCGATCGCGCCTATTTGATCCATCGCTTCACAAAAGTCGG
AGGTGAGGACGGGGTTTGGCACGTGGAGCGAATAAGGTCCATTGAACGAA
GGTACAGCGTGAACGTAGGGATCATGGGCAAAGAAGTTGGCATAAGTTTC
TCAGAGGATATGAACCATGTCGTTTTTCAGGAAGTGTCGGTAGATCTCAG
ACGAGGAAAAGGACTCGGGATAAAGGTGAAGTATGAGGATGTGGATATTT
CGCATCCCAGAGACGTCTATGATCAAGAACAGGGTGTCACGACGACCATT
ATTCGGTGGAAGGAGAATAACTCTGACAGGAACGTTACCTACGAAGCTCG
TCGATTTCGGCTTGTCGATTTCACTTTTACCGCGCACCCTAACAGAACGT
ACATACCCCCAGGCTGCGTGAGCAAGATGTTTGGGGTTGTGATTTCTGTG
GAGAAGAGTCTCAACCGCTTGATATTTGCTCGTTGTGAAACTGCTGGAAA
GCTTATCGAAGCAAGGCCAAGTCCTTGCGGGAATTATTTGTTTGAGCTCA
GAAAACAATGGGGTGAAGGTCACGTCGTGCGGAAGATCAGCATGAATGAT
TTGAAGGACGTCGATATATCCGCACTACCCATCCTTCGTTCTGGTAGGCC
AATGAAAGTTGCGGACTTTCTTATCAATGGGAACATTGCAGTAGTGATCT
TCGCGGAGACGATTAACTGTCGGAGCAGTGCGTTTGCTGATTCGTTCAAC
GATTCTTTCTCCACTTTCACGCCACACGGCTGGGCAGTGTATGACACTCG
ACATTCAGGATCATTCTACACAGTTCTCAAGCAAAATAGAAACACTGAAT
ATCAAGCGGACAAAGGAAGTATCACATTAAGCTCTGATGGTCAGCTTATT
GGTTTCATCCCGGTTCGACAGGAAAAGCATTCGGACTGTGAGTTGCATAT
TTTTGACGTTTCAAGTGGTCGCCTAGCCCAGGTTCGAAAGATAAGAACAG
CATGTTCTTCTCCAGACAATGTGCACATAACAATTGCCCCGGAACGATGT
GTATGTAGGCATGTAATCGGTGCGGGTCTTGAGGCATTAGTCTCAACCTC
TACGGGAACCCCTGGAGCAATGTCATTTGCTTGGTCGTCTCGCAGAATGA
CAAAAGAGTCGTCTTAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:196226..197692-

>Ggra8813.t1 ID=Ggra8813.t1|Name=Ggra8813.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1467bp|location=Sequence derived from alignment at tig00000860_pilon:196226..197692- (Gracilaria gracilis GNS1m male)
ATGTCTGGCACAGACAGTCGATTTGCAGCTCTCTCGGGATCATCTCTGCA
TGAAGCACTAGGTAAACTGGTGACCAAACGCTTCGAATCAACAGATGTCA
TGTCCAAGGTTTCCATAATCCCGGATAGTGTGGAATGCCATACACTTAGT
CCCGACGGAACACTTTTGGCGGTGTTCTTCAGGTCATATCCTATGATGCG
GGTGTACGAGTTGAAAACAAAACGGCAACTACTTGTTCTTCGCATGGGCA
TGATGCCTGGAGTCTTGGATATGGCGTTTTCGTCGGACAGCTCAATATTC
GCTATCTATGGCGATCGCGCCTATTTGATCCATCGCTTCACAAAAGTCGG
AGGTGAGGACGGGGTTTGGCACGTGGAGCGAATAAGGTCCATTGAACGAA
GGTACAGCGTGAACGTAGGGATCATGGGCAAAGAAGTTGGCATAAGTTTC
TCAGAGGATATGAACCATGTCGTTTTTCAGGAAGTGTCGGTAGATCTCAG
ACGAGGAAAAGGACTCGGGATAAAGGTGAAGTATGAGGATGTGGATATTT
CGCATCCCAGAGACGTCTATGATCAAGAACAGGGTGTCACGACGACCATT
ATTCGGTGGAAGGAGAATAACTCTGACAGGAACGTTACCTACGAAGCTCG
TCGATTTCGGCTTGTCGATTTCACTTTTACCGCGCACCCTAACAGAACGT
ACATACCCCCAGGCTGCGTGAGCAAGATGTTTGGGGTTGTGATTTCTGTG
GAGAAGAGTCTCAACCGCTTGATATTTGCTCGTTGTGAAACTGCTGGAAA
GCTTATCGAAGCAAGGCCAAGTCCTTGCGGGAATTATTTGTTTGAGCTCA
GAAAACAATGGGGTGAAGGTCACGTCGTGCGGAAGATCAGCATGAATGAT
TTGAAGGACGTCGATATATCCGCACTACCCATCCTTCGTTCTGGTAGGCC
AATGAAAGTTGCGGACTTTCTTATCAATGGGAACATTGCAGTAGTGATCT
TCGCGGAGACGATTAACTGTCGGAGCAGTGCGTTTGCTGATTCGTTCAAC
GATTCTTTCTCCACTTTCACGCCACACGGCTGGGCAGTGTATGACACTCG
ACATTCAGGATCATTCTACACAGTTCTCAAGCAAAATAGAAACACTGAAT
ATCAAGCGGACAAAGGAAGTATCACATTAAGCTCTGATGGTCAGCTTATT
GGTTTCATCCCGGTTCGACAGGAAAAGCATTCGGACTGTGAGTTGCATAT
TTTTGACGTTTCAAGTGGTCGCCTAGCCCAGGTTCGAAAGATAAGAACAG
CATGTTCTTCTCCAGACAATGTGCACATAACAATTGCCCCGGAACGATGT
GTATGTAGGCATGTAATCGGTGCGGGTCTTGAGGCATTAGTCTCAACCTC
TACGGGAACCCCTGGAGCAATGTCATTTGCTTGGTCGTCTCGCAGAATGA
CAAAAGAGTCGTCTTAG
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