Ggra881.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra881.t1
Unique NameGgra881.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length238
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000212_piloncontigtig00000212_pilon:47781..48494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD07330
Preferred nameSurf2
PFAMsSURF2
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005886,GO:0016020,GO:0016604,GO:0016607,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0070013,GO:0071944
Evalue1.04e-14
EggNOG OGs2A8IF@1|root,2QW1X@2759|Eukaryota
DescriptionSurfeit locus protein 2 (SURF2)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra881Ggra881Gracilaria gracilis GNS1m malegenetig00000212_pilon 47781..48494 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra881.t1.stop1Ggra881.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000212_pilon 47781..47783 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra881.t1.CDS1Ggra881.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000212_pilon 47781..48494 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra881.t1.exon1Ggra881.t1.exon1Gracilaria gracilis GNS1m maleexontig00000212_pilon 47781..48494 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra881.t1.start1Ggra881.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000212_pilon 48492..48494 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra881.t1Ggra881.t1Gracilaria gracilis GNS1m malepolypeptidetig00000212_pilon 47781..48494 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra881.t1 ID=Ggra881.t1|Name=Ggra881.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=238bp
MLPKRDTVLYAEQHRDTAELLPNGKLRFTQSGMDFPAHADLKTLQTYACG
KAYRRALARRKNEAYDFEQHEPYIVAHRHRDEKHFLYCTLTHSTLPRQKD
AVVAHTSGKRFKRRREEARRKSKGTGARIAKRNESGDGDEREAGDAMRNG
GAQDVLNGVVSSDEGSASGEFEMRDDVDAAADGLDEQEANAEAGCLSGQE
TADCMEVETTAVKGSPNGVQRSLSGTRTESVGGRRHR*
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spliced messenger RNA

>Ggra881.t1 ID=Ggra881.t1|Name=Ggra881.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=714bp|location=Sequence derived from alignment at tig00000212_pilon:47781..48494- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTACCCAAACGCGATACGGTGCTTTACGCGGAGCAGCACCGCGACAC
GGCAGAGCTGCTCCCCAACGGCAAGCTGCGCTTCACTCAGTCTGGGATGG
ACTTTCCTGCGCACGCTGATTTGAAGACGTTGCAAACGTACGCGTGCGGG
AAGGCGTATCGCCGCGCGCTGGCGAGAAGGAAGAATGAAGCGTACGACTT
TGAGCAGCACGAGCCGTACATCGTCGCGCACAGGCATCGCGATGAGAAGC
ATTTCTTGTACTGCACGCTGACGCACAGCACGCTGCCGCGGCAGAAGGAC
GCGGTGGTGGCGCATACGAGCGGGAAGAGATTCAAGCGCCGGCGCGAGGA
GGCGCGGAGGAAGAGCAAGGGAACGGGAGCGCGCATTGCGAAGCGCAACG
AAAGCGGTGACGGTGATGAGCGTGAAGCTGGCGATGCGATGCGGAACGGC
GGTGCGCAGGACGTGTTGAACGGTGTGGTGTCAAGCGATGAGGGGAGCGC
GTCTGGCGAGTTTGAAATGAGGGACGATGTGGATGCAGCAGCAGATGGGC
TCGATGAACAGGAAGCGAATGCTGAAGCGGGGTGTTTATCAGGCCAGGAG
ACGGCCGATTGCATGGAGGTGGAGACAACGGCTGTGAAAGGATCGCCGAA
CGGCGTGCAGCGAAGTTTGAGCGGCACGAGGACAGAGAGCGTGGGCGGAC
GCCGTCATCGGTGA
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protein sequence of Ggra881.t1

>Ggra881.t1 ID=Ggra881.t1|Name=Ggra881.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=238bp
MLPKRDTVLYAEQHRDTAELLPNGKLRFTQSGMDFPAHADLKTLQTYACG
KAYRRALARRKNEAYDFEQHEPYIVAHRHRDEKHFLYCTLTHSTLPRQKD
AVVAHTSGKRFKRRREEARRKSKGTGARIAKRNESGDGDEREAGDAMRNG
GAQDVLNGVVSSDEGSASGEFEMRDDVDAAADGLDEQEANAEAGCLSGQE
TADCMEVETTAVKGSPNGVQRSLSGTRTESVGGRRHR*
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mRNA from alignment at tig00000212_pilon:47781..48494-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra881.t1 ID=Ggra881.t1|Name=Ggra881.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=714bp|location=Sequence derived from alignment at tig00000212_pilon:47781..48494- (Gracilaria gracilis GNS1m male)
ATGTTACCCAAACGCGATACGGTGCTTTACGCGGAGCAGCACCGCGACAC
GGCAGAGCTGCTCCCCAACGGCAAGCTGCGCTTCACTCAGTCTGGGATGG
ACTTTCCTGCGCACGCTGATTTGAAGACGTTGCAAACGTACGCGTGCGGG
AAGGCGTATCGCCGCGCGCTGGCGAGAAGGAAGAATGAAGCGTACGACTT
TGAGCAGCACGAGCCGTACATCGTCGCGCACAGGCATCGCGATGAGAAGC
ATTTCTTGTACTGCACGCTGACGCACAGCACGCTGCCGCGGCAGAAGGAC
GCGGTGGTGGCGCATACGAGCGGGAAGAGATTCAAGCGCCGGCGCGAGGA
GGCGCGGAGGAAGAGCAAGGGAACGGGAGCGCGCATTGCGAAGCGCAACG
AAAGCGGTGACGGTGATGAGCGTGAAGCTGGCGATGCGATGCGGAACGGC
GGTGCGCAGGACGTGTTGAACGGTGTGGTGTCAAGCGATGAGGGGAGCGC
GTCTGGCGAGTTTGAAATGAGGGACGATGTGGATGCAGCAGCAGATGGGC
TCGATGAACAGGAAGCGAATGCTGAAGCGGGGTGTTTATCAGGCCAGGAG
ACGGCCGATTGCATGGAGGTGGAGACAACGGCTGTGAAAGGATCGCCGAA
CGGCGTGCAGCGAAGTTTGAGCGGCACGAGGACAGAGAGCGTGGGCGGAC
GCCGTCATCGGTGA
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Coding sequence (CDS) from alignment at tig00000212_pilon:47781..48494-

>Ggra881.t1 ID=Ggra881.t1|Name=Ggra881.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=714bp|location=Sequence derived from alignment at tig00000212_pilon:47781..48494- (Gracilaria gracilis GNS1m male)
ATGTTACCCAAACGCGATACGGTGCTTTACGCGGAGCAGCACCGCGACAC
GGCAGAGCTGCTCCCCAACGGCAAGCTGCGCTTCACTCAGTCTGGGATGG
ACTTTCCTGCGCACGCTGATTTGAAGACGTTGCAAACGTACGCGTGCGGG
AAGGCGTATCGCCGCGCGCTGGCGAGAAGGAAGAATGAAGCGTACGACTT
TGAGCAGCACGAGCCGTACATCGTCGCGCACAGGCATCGCGATGAGAAGC
ATTTCTTGTACTGCACGCTGACGCACAGCACGCTGCCGCGGCAGAAGGAC
GCGGTGGTGGCGCATACGAGCGGGAAGAGATTCAAGCGCCGGCGCGAGGA
GGCGCGGAGGAAGAGCAAGGGAACGGGAGCGCGCATTGCGAAGCGCAACG
AAAGCGGTGACGGTGATGAGCGTGAAGCTGGCGATGCGATGCGGAACGGC
GGTGCGCAGGACGTGTTGAACGGTGTGGTGTCAAGCGATGAGGGGAGCGC
GTCTGGCGAGTTTGAAATGAGGGACGATGTGGATGCAGCAGCAGATGGGC
TCGATGAACAGGAAGCGAATGCTGAAGCGGGGTGTTTATCAGGCCAGGAG
ACGGCCGATTGCATGGAGGTGGAGACAACGGCTGTGAAAGGATCGCCGAA
CGGCGTGCAGCGAAGTTTGAGCGGCACGAGGACAGAGAGCGTGGGCGGAC
GCCGTCATCGGTGA
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