Ggra8806.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8806.t1
Unique NameGgra8806.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length221
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:175847..176509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1379270.AUXF01000006_gene57
PFAMsCMD
Max annot lvl142182|Gemmatimonadetes
KEGG rclassRC00938
KEGG koko:K01607
KEGG ReactionR03470
KEGG Pathwayko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220
Evalue4.4e-13
EggNOG OGsCOG0599@1|root,COG0599@2|Bacteria,1ZTPF@142182|Gemmatimonadetes
EC4.1.1.44
DescriptionCarboxymuconolactone decarboxylase family
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8806Ggra8806Gracilaria gracilis GNS1m malegenetig00000860_pilon 175847..176509 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8806.t1.stop1Ggra8806.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 175847..175849 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8806.t1.CDS1Ggra8806.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 175847..176509 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8806.t1.exon1Ggra8806.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 175847..176509 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8806.t1.start1Ggra8806.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 176507..176509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8806.t1Ggra8806.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 175847..176509 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8806.t1 ID=Ggra8806.t1|Name=Ggra8806.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=221bp
MSNLYPLLAKLPKAPPTICTQFRTILLAVAHVAGGDVHGVTSAFRYIDPQ
HHKKAYELAIVQAMPFIGIPRSLHAAAALQVLGVVGDPEQSTLASIADLE
QKGEHTFNKIYGRNAYRVRKRLKQFHPFVEQWVMTCNYGAMLSRDDATLR
ERELAAVAALSVDKCASVQLASHIRGAFKVGASYDEVQMTVEHARVLADE
DDWRSAEAVMQTWDRARYAL*
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spliced messenger RNA

>Ggra8806.t1 ID=Ggra8806.t1|Name=Ggra8806.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=663bp|location=Sequence derived from alignment at tig00000860_pilon:175847..176509- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAAACCTTTACCCTCTGCTTGCCAAACTCCCAAAAGCACCGCCAAC
CATCTGTACCCAGTTCCGAACAATTCTGTTGGCTGTGGCCCATGTCGCAG
GCGGAGATGTACATGGTGTAACCAGCGCGTTTCGCTATATCGATCCTCAA
CATCATAAGAAGGCATACGAGCTTGCCATAGTGCAGGCAATGCCATTCAT
CGGAATTCCTCGTTCACTCCACGCAGCCGCAGCTCTACAGGTTTTGGGCG
TGGTTGGTGATCCAGAACAATCCACTTTGGCTTCCATTGCAGACCTTGAA
CAAAAAGGTGAGCATACCTTCAACAAGATTTACGGACGCAATGCATACCG
AGTGAGAAAGCGATTGAAACAGTTTCATCCGTTTGTGGAACAATGGGTGA
TGACCTGCAATTATGGCGCAATGCTTTCGCGTGATGATGCTACGCTTCGG
GAGCGCGAATTGGCAGCAGTAGCAGCATTGTCCGTCGATAAATGTGCCTC
AGTGCAACTGGCGAGCCATATTCGAGGTGCGTTCAAAGTTGGCGCCAGCT
ATGATGAGGTACAGATGACAGTGGAACATGCGCGCGTTCTAGCGGACGAG
GACGACTGGAGAAGTGCGGAGGCTGTGATGCAGACATGGGATCGTGCTAG
ATACGCACTCTAA
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protein sequence of Ggra8806.t1

>Ggra8806.t1 ID=Ggra8806.t1|Name=Ggra8806.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=221bp
MSNLYPLLAKLPKAPPTICTQFRTILLAVAHVAGGDVHGVTSAFRYIDPQ
HHKKAYELAIVQAMPFIGIPRSLHAAAALQVLGVVGDPEQSTLASIADLE
QKGEHTFNKIYGRNAYRVRKRLKQFHPFVEQWVMTCNYGAMLSRDDATLR
ERELAAVAALSVDKCASVQLASHIRGAFKVGASYDEVQMTVEHARVLADE
DDWRSAEAVMQTWDRARYAL*
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mRNA from alignment at tig00000860_pilon:175847..176509-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8806.t1 ID=Ggra8806.t1|Name=Ggra8806.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=663bp|location=Sequence derived from alignment at tig00000860_pilon:175847..176509- (Gracilaria gracilis GNS1m male)
ATGTCAAACCTTTACCCTCTGCTTGCCAAACTCCCAAAAGCACCGCCAAC
CATCTGTACCCAGTTCCGAACAATTCTGTTGGCTGTGGCCCATGTCGCAG
GCGGAGATGTACATGGTGTAACCAGCGCGTTTCGCTATATCGATCCTCAA
CATCATAAGAAGGCATACGAGCTTGCCATAGTGCAGGCAATGCCATTCAT
CGGAATTCCTCGTTCACTCCACGCAGCCGCAGCTCTACAGGTTTTGGGCG
TGGTTGGTGATCCAGAACAATCCACTTTGGCTTCCATTGCAGACCTTGAA
CAAAAAGGTGAGCATACCTTCAACAAGATTTACGGACGCAATGCATACCG
AGTGAGAAAGCGATTGAAACAGTTTCATCCGTTTGTGGAACAATGGGTGA
TGACCTGCAATTATGGCGCAATGCTTTCGCGTGATGATGCTACGCTTCGG
GAGCGCGAATTGGCAGCAGTAGCAGCATTGTCCGTCGATAAATGTGCCTC
AGTGCAACTGGCGAGCCATATTCGAGGTGCGTTCAAAGTTGGCGCCAGCT
ATGATGAGGTACAGATGACAGTGGAACATGCGCGCGTTCTAGCGGACGAG
GACGACTGGAGAAGTGCGGAGGCTGTGATGCAGACATGGGATCGTGCTAG
ATACGCACTCTAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:175847..176509-

>Ggra8806.t1 ID=Ggra8806.t1|Name=Ggra8806.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=663bp|location=Sequence derived from alignment at tig00000860_pilon:175847..176509- (Gracilaria gracilis GNS1m male)
ATGTCAAACCTTTACCCTCTGCTTGCCAAACTCCCAAAAGCACCGCCAAC
CATCTGTACCCAGTTCCGAACAATTCTGTTGGCTGTGGCCCATGTCGCAG
GCGGAGATGTACATGGTGTAACCAGCGCGTTTCGCTATATCGATCCTCAA
CATCATAAGAAGGCATACGAGCTTGCCATAGTGCAGGCAATGCCATTCAT
CGGAATTCCTCGTTCACTCCACGCAGCCGCAGCTCTACAGGTTTTGGGCG
TGGTTGGTGATCCAGAACAATCCACTTTGGCTTCCATTGCAGACCTTGAA
CAAAAAGGTGAGCATACCTTCAACAAGATTTACGGACGCAATGCATACCG
AGTGAGAAAGCGATTGAAACAGTTTCATCCGTTTGTGGAACAATGGGTGA
TGACCTGCAATTATGGCGCAATGCTTTCGCGTGATGATGCTACGCTTCGG
GAGCGCGAATTGGCAGCAGTAGCAGCATTGTCCGTCGATAAATGTGCCTC
AGTGCAACTGGCGAGCCATATTCGAGGTGCGTTCAAAGTTGGCGCCAGCT
ATGATGAGGTACAGATGACAGTGGAACATGCGCGCGTTCTAGCGGACGAG
GACGACTGGAGAAGTGCGGAGGCTGTGATGCAGACATGGGATCGTGCTAG
ATACGCACTCTAA
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