Ggra8804.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8804.t1
Unique NameGgra8804.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length194
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:170968..171656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708389.1
PFAMsCyt-b5
Max annot lvl2759|Eukaryota
KEGG koko:K17278
Evalue8.24e-29
EggNOG OGsKOG1110@1|root,KOG1110@2759|Eukaryota
Descriptionsteroid binding
COG categoryCH
BRITEko00000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8804Ggra8804Gracilaria gracilis GNS1m malegenetig00000860_pilon 170968..171656 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8804.t1Ggra8804.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 170968..171656 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8804.t1.start1Ggra8804.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 170968..170970 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8804.t1.CDS1Ggra8804.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 170968..171035 +
Ggra8804.t1.CDS2Ggra8804.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 171143..171656 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8804.t1.exon1Ggra8804.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 170968..171035 +
Ggra8804.t1.exon2Ggra8804.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 171143..171656 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8804.t1.intron1Ggra8804.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 171036..171142 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8804.t1.stop1Ggra8804.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 171654..171656 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8804.t1 ID=Ggra8804.t1|Name=Ggra8804.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=194bp
MDASALDSELENNNTTLNSKSIANLSLAITAVSLLCFLIIRQLMRKSIPN
ENQNMNASERQTTAQRPVTESELSKSTGEEGQPTYLAVKDPFSTKITVFD
VTSAKGFYGPGGPYHVFAGKNATHGLATSSTDPDKVTCDLSNLTESQKDT
HLQWHAKYSTKYPIVGYLVSDESAAAQETESVSTQDAETKKNA*
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spliced messenger RNA

>Ggra8804.t1 ID=Ggra8804.t1|Name=Ggra8804.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=582bp|location=Sequence derived from alignment at tig00000860_pilon:170968..171656+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCATCCGCCCTGGACAGCGAACTCGAGAATAACAACACCACCCT
CAACAGCAAAAGCATAGCAAATCTATCTCTCGCCATTACCGCCGTGAGCC
TACTTTGCTTCCTAATCATAAGGCAGTTGATGAGAAAGAGTATTCCTAAC
GAGAACCAGAACATGAACGCTTCGGAGCGTCAAACCACTGCCCAGAGACC
AGTCACCGAATCAGAACTGAGCAAATCAACCGGTGAAGAAGGTCAACCAA
CATATCTCGCCGTGAAAGATCCCTTCAGCACCAAAATCACTGTCTTTGAT
GTCACTTCTGCCAAAGGCTTCTACGGTCCTGGTGGTCCGTATCACGTGTT
TGCTGGGAAAAACGCCACCCATGGCCTTGCAACTAGCAGCACCGATCCGG
ACAAAGTCACATGCGATTTATCCAATCTTACCGAAAGCCAGAAAGATACA
CACCTGCAGTGGCACGCCAAATACTCTACAAAGTATCCAATTGTTGGATA
TCTAGTTTCCGATGAAAGCGCAGCAGCTCAAGAGACGGAATCCGTCAGCA
CTCAAGATGCGGAAACAAAGAAGAACGCATAA
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protein sequence of Ggra8804.t1

>Ggra8804.t1 ID=Ggra8804.t1|Name=Ggra8804.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=194bp
MDASALDSELENNNTTLNSKSIANLSLAITAVSLLCFLIIRQLMRKSIPN
ENQNMNASERQTTAQRPVTESELSKSTGEEGQPTYLAVKDPFSTKITVFD
VTSAKGFYGPGGPYHVFAGKNATHGLATSSTDPDKVTCDLSNLTESQKDT
HLQWHAKYSTKYPIVGYLVSDESAAAQETESVSTQDAETKKNA*
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mRNA from alignment at tig00000860_pilon:170968..171656+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8804.t1 ID=Ggra8804.t1|Name=Ggra8804.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=689bp|location=Sequence derived from alignment at tig00000860_pilon:170968..171656+ (Gracilaria gracilis GNS1m male)
ATGGACGCATCCGCCCTGGACAGCGAACTCGAGAATAACAACACCACCCT
CAACAGCAAAAGCATAGCGTACGTTGCCAAAAGAGTCCTACATGGATCGA
CAAAGCACCCATCTCACAGCCATCTATTTTCTACATCCCATGTTCACACT
CAAACGCTCAATCTACTACACGCAGAAATCTATCTCTCGCCATTACCGCC
GTGAGCCTACTTTGCTTCCTAATCATAAGGCAGTTGATGAGAAAGAGTAT
TCCTAACGAGAACCAGAACATGAACGCTTCGGAGCGTCAAACCACTGCCC
AGAGACCAGTCACCGAATCAGAACTGAGCAAATCAACCGGTGAAGAAGGT
CAACCAACATATCTCGCCGTGAAAGATCCCTTCAGCACCAAAATCACTGT
CTTTGATGTCACTTCTGCCAAAGGCTTCTACGGTCCTGGTGGTCCGTATC
ACGTGTTTGCTGGGAAAAACGCCACCCATGGCCTTGCAACTAGCAGCACC
GATCCGGACAAAGTCACATGCGATTTATCCAATCTTACCGAAAGCCAGAA
AGATACACACCTGCAGTGGCACGCCAAATACTCTACAAAGTATCCAATTG
TTGGATATCTAGTTTCCGATGAAAGCGCAGCAGCTCAAGAGACGGAATCC
GTCAGCACTCAAGATGCGGAAACAAAGAAGAACGCATAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:170968..171656+

>Ggra8804.t1 ID=Ggra8804.t1|Name=Ggra8804.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=582bp|location=Sequence derived from alignment at tig00000860_pilon:170968..171656+ (Gracilaria gracilis GNS1m male)
ATGGACGCATCCGCCCTGGACAGCGAACTCGAGAATAACAACACCACCCT
CAACAGCAAAAGCATAGCAAATCTATCTCTCGCCATTACCGCCGTGAGCC
TACTTTGCTTCCTAATCATAAGGCAGTTGATGAGAAAGAGTATTCCTAAC
GAGAACCAGAACATGAACGCTTCGGAGCGTCAAACCACTGCCCAGAGACC
AGTCACCGAATCAGAACTGAGCAAATCAACCGGTGAAGAAGGTCAACCAA
CATATCTCGCCGTGAAAGATCCCTTCAGCACCAAAATCACTGTCTTTGAT
GTCACTTCTGCCAAAGGCTTCTACGGTCCTGGTGGTCCGTATCACGTGTT
TGCTGGGAAAAACGCCACCCATGGCCTTGCAACTAGCAGCACCGATCCGG
ACAAAGTCACATGCGATTTATCCAATCTTACCGAAAGCCAGAAAGATACA
CACCTGCAGTGGCACGCCAAATACTCTACAAAGTATCCAATTGTTGGATA
TCTAGTTTCCGATGAAAGCGCAGCAGCTCAAGAGACGGAATCCGTCAGCA
CTCAAGATGCGGAAACAAAGAAGAACGCATAA
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