Ggra8803.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8803.t1
Unique NameGgra8803.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length162
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:169774..170259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog511062.GU3_09275
PFAMsHSP20
Max annot lvl135624|Aeromonadales
KEGG koko:K13993
KEGG Pathwayko04141,map04141
Evalue1.74e-05
EggNOG OGsCOG0071@1|root,COG0071@2|Bacteria,1N7C7@1224|Proteobacteria,1SWNQ@1236|Gammaproteobacteria,1Y4WB@135624|Aeromonadales
DescriptionBelongs to the small heat shock protein (HSP20) family
COG categoryO
BRITEko00000,ko00001,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8803Ggra8803Gracilaria gracilis GNS1m malegenetig00000860_pilon 169774..170259 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8803.t1.start1Ggra8803.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 169774..169776 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8803.t1.CDS1Ggra8803.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 169774..170259 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8803.t1.exon1Ggra8803.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 169774..170259 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8803.t1.stop1Ggra8803.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 170257..170259 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8803.t1Ggra8803.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 169774..170259 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8803.t1 ID=Ggra8803.t1|Name=Ggra8803.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=162bp
MHPLSPVSFANCKPCIQHHLSDQVKRSFESSGRPLHKIPNFEYHRKYDSL
SLEVELPGVQKEHIEIELRGPELCIAAHRFKSSGMVVQEREERTECHGDD
EMNMDEGKKASLVYVLTIPLAKAGEYVPEAGIKAEQNDGILKMFVPLKRM
DGVRQIAITQG*
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spliced messenger RNA

>Ggra8803.t1 ID=Ggra8803.t1|Name=Ggra8803.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=486bp|location=Sequence derived from alignment at tig00000860_pilon:169774..170259+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCCATTGTCACCGGTCTCGTTCGCCAATTGCAAACCTTGCATACA
ACACCACCTGTCCGACCAAGTTAAAAGAAGCTTCGAGTCTTCCGGGCGCC
CACTACACAAAATACCGAACTTTGAGTATCACCGAAAATACGATAGCCTC
TCTCTGGAGGTAGAGTTACCCGGCGTGCAGAAGGAGCACATCGAGATTGA
GTTGCGTGGACCAGAGCTGTGCATCGCGGCACATCGTTTCAAATCGAGTG
GTATGGTGGTCCAGGAACGTGAGGAGCGCACCGAGTGCCATGGTGATGAT
GAAATGAACATGGATGAGGGAAAGAAGGCTAGTTTGGTATATGTGTTGAC
AATACCCTTGGCAAAGGCTGGTGAGTATGTGCCTGAAGCAGGAATCAAGG
CTGAACAAAACGATGGGATTTTAAAGATGTTCGTTCCTTTGAAGAGGATG
GACGGCGTTCGTCAAATTGCTATCACGCAGGGATAA
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protein sequence of Ggra8803.t1

>Ggra8803.t1 ID=Ggra8803.t1|Name=Ggra8803.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=162bp
MHPLSPVSFANCKPCIQHHLSDQVKRSFESSGRPLHKIPNFEYHRKYDSL
SLEVELPGVQKEHIEIELRGPELCIAAHRFKSSGMVVQEREERTECHGDD
EMNMDEGKKASLVYVLTIPLAKAGEYVPEAGIKAEQNDGILKMFVPLKRM
DGVRQIAITQG*
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mRNA from alignment at tig00000860_pilon:169774..170259+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8803.t1 ID=Ggra8803.t1|Name=Ggra8803.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=486bp|location=Sequence derived from alignment at tig00000860_pilon:169774..170259+ (Gracilaria gracilis GNS1m male)
ATGCACCCATTGTCACCGGTCTCGTTCGCCAATTGCAAACCTTGCATACA
ACACCACCTGTCCGACCAAGTTAAAAGAAGCTTCGAGTCTTCCGGGCGCC
CACTACACAAAATACCGAACTTTGAGTATCACCGAAAATACGATAGCCTC
TCTCTGGAGGTAGAGTTACCCGGCGTGCAGAAGGAGCACATCGAGATTGA
GTTGCGTGGACCAGAGCTGTGCATCGCGGCACATCGTTTCAAATCGAGTG
GTATGGTGGTCCAGGAACGTGAGGAGCGCACCGAGTGCCATGGTGATGAT
GAAATGAACATGGATGAGGGAAAGAAGGCTAGTTTGGTATATGTGTTGAC
AATACCCTTGGCAAAGGCTGGTGAGTATGTGCCTGAAGCAGGAATCAAGG
CTGAACAAAACGATGGGATTTTAAAGATGTTCGTTCCTTTGAAGAGGATG
GACGGCGTTCGTCAAATTGCTATCACGCAGGGATAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:169774..170259+

>Ggra8803.t1 ID=Ggra8803.t1|Name=Ggra8803.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=486bp|location=Sequence derived from alignment at tig00000860_pilon:169774..170259+ (Gracilaria gracilis GNS1m male)
ATGCACCCATTGTCACCGGTCTCGTTCGCCAATTGCAAACCTTGCATACA
ACACCACCTGTCCGACCAAGTTAAAAGAAGCTTCGAGTCTTCCGGGCGCC
CACTACACAAAATACCGAACTTTGAGTATCACCGAAAATACGATAGCCTC
TCTCTGGAGGTAGAGTTACCCGGCGTGCAGAAGGAGCACATCGAGATTGA
GTTGCGTGGACCAGAGCTGTGCATCGCGGCACATCGTTTCAAATCGAGTG
GTATGGTGGTCCAGGAACGTGAGGAGCGCACCGAGTGCCATGGTGATGAT
GAAATGAACATGGATGAGGGAAAGAAGGCTAGTTTGGTATATGTGTTGAC
AATACCCTTGGCAAAGGCTGGTGAGTATGTGCCTGAAGCAGGAATCAAGG
CTGAACAAAACGATGGGATTTTAAAGATGTTCGTTCCTTTGAAGAGGATG
GACGGCGTTCGTCAAATTGCTATCACGCAGGGATAA
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