Ggra8802.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8802.t1
Unique NameGgra8802.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length293
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:166860..167825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMR341CT
Preferred nameSURF4
PFAMsSURF4
Max annot lvl2759|Eukaryota
KEGG koko:K14998,ko:K20369
KEGG TC3.D.4.8
GOsGO:0000139,GO:0000323,GO:0001775,GO:0002119,GO:0002164,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0005886,GO:0006810,GO:0006887,GO:0006888,GO:0006890,GO:0006955,GO:0006996,GO:0007005,GO:0007030,GO:0007275,GO:0008150,GO:0008535,GO:0009791,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010256,GO:0010604,GO:0010638,GO:0010646,GO:0010648,GO:0012505,GO:0012506,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0017004,GO:0019222,GO:0022607,GO:0023051,GO:0023057,GO:0030133,GO:0030134,GO:0030135,GO:0030141,GO:0030659,GO:0030667,GO:0030674,GO:0031090,GO:0031224,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031410,GO:0031982,GO:0031984,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032940,GO:0033043,GO:0033108,GO:0033617,GO:0034622,GO:0035577,GO:0036230,GO:0040027,GO:0040028,GO:0042058,GO:0042059,GO:0042119,GO:0042175,GO:0042176,GO:0042582,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045169,GO:0045321,GO:0045732,GO:0046903,GO:0046907,GO:0048193,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048581,GO:0048583,GO:0048585,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051641,GO:0051649,GO:0060090,GO:0060255,GO:0061062,GO:0061064,GO:0065003,GO:0065007,GO:0071840,GO:0071944,GO:0080090,GO:0097020,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:0098827,GO:0098852,GO:0099503,GO:1901184,GO:1901185,GO:1903362,GO:1903364,GO:2000026
Evalue2.09e-60
EggNOG OGsCOG2259@1|root,KOG3998@2759|Eukaryota
DescriptionCOPII adaptor activity
COG categoryM
BRITEko00000,ko03029,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8802Ggra8802Gracilaria gracilis GNS1m malegenetig00000860_pilon 166860..167825 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8802.t1Ggra8802.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 166860..167825 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8802.t1.stop1Ggra8802.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 166860..166862 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8802.t1.CDS1Ggra8802.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 166860..166962 -
Ggra8802.t1.CDS2Ggra8802.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 167050..167825 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8802.t1.exon1Ggra8802.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 166860..166962 -
Ggra8802.t1.exon2Ggra8802.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 167050..167825 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8802.t1.intron1Ggra8802.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 166963..167049 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8802.t1.start1Ggra8802.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 167823..167825 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8802.t1 ID=Ggra8802.t1|Name=Ggra8802.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=293bp
MEPSITTSVNMNSIPKVVRQNLSTLRKFKKSIAPHLPLICRILLVSTFIE
DGIRVLFEMRQQILFLSHEYYLPGFIAGLMLLSNITVSFVAIGVILAGKR
VARGRHENLAAYALIACVIYQQVLYGRHSPIGSGNVGFLIRNLCLSGSLL
LITCQSRLAQGRSALPYGLLDGQADKQTTVAYLQLASRIMLVLLGLEFLT
TLGVLGTLLALPVIFAVLLGFKLEISGIVLFFFYLVHNILNSAFWSVKGT
YVSQIMQYEFFQTLSIMGGLLLLIMTGPGAISIDEMRSRKAF*
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spliced messenger RNA

>Ggra8802.t1 ID=Ggra8802.t1|Name=Ggra8802.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=879bp|location=Sequence derived from alignment at tig00000860_pilon:166860..167825- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCCTTCAATTACCACTAGCGTCAATATGAACTCCATTCCCAAGGT
GGTCCGTCAGAACCTCTCCACGTTGCGCAAGTTCAAAAAGTCAATAGCAC
CACATCTGCCACTCATTTGCCGCATTCTGCTCGTGTCCACCTTCATCGAG
GATGGAATCCGTGTCTTGTTCGAGATGAGACAACAAATTCTATTCCTTAG
TCACGAATACTATCTCCCCGGCTTCATAGCTGGACTCATGTTGCTGTCAA
ACATCACCGTCTCCTTCGTTGCAATCGGCGTCATTCTAGCCGGCAAGCGT
GTCGCCAGAGGCAGACACGAGAACCTGGCTGCCTACGCACTAATTGCCTG
CGTCATCTATCAACAAGTTCTCTACGGACGTCATTCTCCAATCGGTTCTG
GAAACGTTGGTTTTCTTATTCGCAATCTTTGTCTTTCCGGCAGTCTACTA
CTCATTACCTGTCAATCCAGGCTGGCGCAGGGACGTAGTGCACTGCCGTA
TGGTTTGTTGGATGGTCAAGCTGATAAGCAAACTACTGTCGCTTATTTGC
AACTTGCTTCTCGTATCATGCTTGTTCTGTTGGGGCTTGAGTTTTTGACC
ACTTTGGGCGTGCTTGGTACCCTTCTTGCTCTTCCCGTTATTTTCGCTGT
CTTGTTGGGTTTCAAGCTTGAAATCAGCGGTATCGTTCTCTTCTTCTTTT
ACTTAGTTCACAACATTCTCAACTCTGCATTCTGGTCCGTCAAGGGAACC
TACGTTTCTCAGATCATGCAATATGAATTCTTCCAAACGCTGTCCATCAT
GGGAGGGCTATTACTTCTAATAATGACCGGCCCGGGCGCCATTTCCATCG
ACGAAATGAGAAGTCGAAAGGCATTCTAA
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protein sequence of Ggra8802.t1

>Ggra8802.t1 ID=Ggra8802.t1|Name=Ggra8802.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=293bp
MEPSITTSVNMNSIPKVVRQNLSTLRKFKKSIAPHLPLICRILLVSTFIE
DGIRVLFEMRQQILFLSHEYYLPGFIAGLMLLSNITVSFVAIGVILAGKR
VARGRHENLAAYALIACVIYQQVLYGRHSPIGSGNVGFLIRNLCLSGSLL
LITCQSRLAQGRSALPYGLLDGQADKQTTVAYLQLASRIMLVLLGLEFLT
TLGVLGTLLALPVIFAVLLGFKLEISGIVLFFFYLVHNILNSAFWSVKGT
YVSQIMQYEFFQTLSIMGGLLLLIMTGPGAISIDEMRSRKAF*
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mRNA from alignment at tig00000860_pilon:166860..167825-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8802.t1 ID=Ggra8802.t1|Name=Ggra8802.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=966bp|location=Sequence derived from alignment at tig00000860_pilon:166860..167825- (Gracilaria gracilis GNS1m male)
ATGGAGCCTTCAATTACCACTAGCGTCAATATGAACTCCATTCCCAAGGT
GGTCCGTCAGAACCTCTCCACGTTGCGCAAGTTCAAAAAGTCAATAGCAC
CACATCTGCCACTCATTTGCCGCATTCTGCTCGTGTCCACCTTCATCGAG
GATGGAATCCGTGTCTTGTTCGAGATGAGACAACAAATTCTATTCCTTAG
TCACGAATACTATCTCCCCGGCTTCATAGCTGGACTCATGTTGCTGTCAA
ACATCACCGTCTCCTTCGTTGCAATCGGCGTCATTCTAGCCGGCAAGCGT
GTCGCCAGAGGCAGACACGAGAACCTGGCTGCCTACGCACTAATTGCCTG
CGTCATCTATCAACAAGTTCTCTACGGACGTCATTCTCCAATCGGTTCTG
GAAACGTTGGTTTTCTTATTCGCAATCTTTGTCTTTCCGGCAGTCTACTA
CTCATTACCTGTCAATCCAGGCTGGCGCAGGGACGTAGTGCACTGCCGTA
TGGTTTGTTGGATGGTCAAGCTGATAAGCAAACTACTGTCGCTTATTTGC
AACTTGCTTCTCGTATCATGCTTGTTCTGTTGGGGCTTGAGTTTTTGACC
ACTTTGGGCGTGCTTGGTACCCTTCTTGCTCTTCCCGTTATTTTCGCTGT
CTTGTTGGGTTTCAAGCTTGAAATCAGCGGTATCGTTCTCTTCTTCTTTT
ACTTAGTTCACAACATTCTCAACTCTGCATTCTGGTCCGTCAAGGGAACC
TACGTTTCTCAGATCATGCAATATGAGTAAGTTCAATCCTCTTGTCGCCT
TATCGCCTCACCTGTCCCGATTACTGTTGTCTGACTCTTTGTTTTCACAA
TGATCTTCTGCAGATTCTTCCAAACGCTGTCCATCATGGGAGGGCTATTA
CTTCTAATAATGACCGGCCCGGGCGCCATTTCCATCGACGAAATGAGAAG
TCGAAAGGCATTCTAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:166860..167825-

>Ggra8802.t1 ID=Ggra8802.t1|Name=Ggra8802.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=879bp|location=Sequence derived from alignment at tig00000860_pilon:166860..167825- (Gracilaria gracilis GNS1m male)
ATGGAGCCTTCAATTACCACTAGCGTCAATATGAACTCCATTCCCAAGGT
GGTCCGTCAGAACCTCTCCACGTTGCGCAAGTTCAAAAAGTCAATAGCAC
CACATCTGCCACTCATTTGCCGCATTCTGCTCGTGTCCACCTTCATCGAG
GATGGAATCCGTGTCTTGTTCGAGATGAGACAACAAATTCTATTCCTTAG
TCACGAATACTATCTCCCCGGCTTCATAGCTGGACTCATGTTGCTGTCAA
ACATCACCGTCTCCTTCGTTGCAATCGGCGTCATTCTAGCCGGCAAGCGT
GTCGCCAGAGGCAGACACGAGAACCTGGCTGCCTACGCACTAATTGCCTG
CGTCATCTATCAACAAGTTCTCTACGGACGTCATTCTCCAATCGGTTCTG
GAAACGTTGGTTTTCTTATTCGCAATCTTTGTCTTTCCGGCAGTCTACTA
CTCATTACCTGTCAATCCAGGCTGGCGCAGGGACGTAGTGCACTGCCGTA
TGGTTTGTTGGATGGTCAAGCTGATAAGCAAACTACTGTCGCTTATTTGC
AACTTGCTTCTCGTATCATGCTTGTTCTGTTGGGGCTTGAGTTTTTGACC
ACTTTGGGCGTGCTTGGTACCCTTCTTGCTCTTCCCGTTATTTTCGCTGT
CTTGTTGGGTTTCAAGCTTGAAATCAGCGGTATCGTTCTCTTCTTCTTTT
ACTTAGTTCACAACATTCTCAACTCTGCATTCTGGTCCGTCAAGGGAACC
TACGTTTCTCAGATCATGCAATATGAATTCTTCCAAACGCTGTCCATCAT
GGGAGGGCTATTACTTCTAATAATGACCGGCCCGGGCGCCATTTCCATCG
ACGAAATGAGAAGTCGAAAGGCATTCTAA
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