Ggra8800.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8800.t1
Unique NameGgra8800.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length378
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:162193..163406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8800Ggra8800Gracilaria gracilis GNS1m malegenetig00000860_pilon 162193..163406 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8800.t1Ggra8800.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 162193..163406 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8800.t1.start1Ggra8800.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 162193..162195 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8800.t1.CDS1Ggra8800.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 162193..162588 +
Ggra8800.t1.CDS2Ggra8800.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 162669..163406 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8800.t1.exon1Ggra8800.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 162193..162588 +
Ggra8800.t1.exon2Ggra8800.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 162669..163406 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8800.t1.intron1Ggra8800.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 162589..162668 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8800.t1.stop1Ggra8800.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 163404..163406 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8800.t1 ID=Ggra8800.t1|Name=Ggra8800.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=378bp
MSRSGENNQFEPQLSKGISVDVPTGSTIYDPAIISLREDFRAKVEERKAK
QLQQSPDNDIAIQSPMHVNVTSPVPRKSRKSRKSLFLRADNDAAESESED
LELGDLDGETELCCNGYIPLFPLLIFMNSVKILAGIAGMAIGVFQLITGG
NSVGVSSLERLVISGSFLFSIAFITIGVVLIISGLLGVVLFTIRSRTNSR
TAKRLDVVYHSGLFLLVIVLFVLFVLTVWVWVQTSKGGIYNNEFWQELVR
SNPSHLCKTEERLNCAAYELEQCMISANQTKMLFCPGHFCIDFCRITTEN
VNVQPICAACRDESLDTIDSFVSCKRNEIQFTNTTACMNVANADLQAAYR
RLLAAALVSFLWILVSVCVSTYQYCFS*
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spliced messenger RNA

>Ggra8800.t1 ID=Ggra8800.t1|Name=Ggra8800.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1134bp|location=Sequence derived from alignment at tig00000860_pilon:162193..163406+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCGCTCAGGGGAGAATAACCAATTCGAGCCACAGCTATCGAAAGG
GATAAGTGTCGATGTCCCCACTGGTTCAACGATATATGATCCGGCAATTA
TCTCCCTTCGTGAAGATTTCAGGGCAAAAGTCGAAGAAAGAAAAGCAAAG
CAACTTCAACAATCTCCAGACAATGACATTGCTATTCAAAGCCCCATGCA
CGTTAATGTTACATCCCCAGTACCGAGAAAGTCGAGAAAGTCAAGAAAGT
CGTTGTTTCTGAGAGCTGACAATGACGCTGCAGAATCGGAGTCTGAAGAC
CTAGAGCTTGGAGATTTGGATGGAGAAACCGAGCTTTGTTGTAATGGATA
CATCCCCTTGTTTCCCTTGTTGATATTTATGAACAGCGTCAAAATTCTGG
CTGGAATAGCCGGAATGGCAATTGGAGTTTTTCAGTTGATCACTGGTGGC
AATTCTGTTGGGGTCTCTTCTCTGGAGAGATTGGTCATTTCAGGGTCCTT
TCTATTCTCCATCGCGTTCATTACAATTGGAGTAGTGCTCATCATATCAG
GACTTCTGGGAGTTGTCCTGTTCACCATCCGTTCCCGAACTAATTCACGC
ACCGCAAAGAGGCTGGATGTTGTTTATCACAGTGGGCTTTTCTTATTGGT
CATTGTTCTCTTCGTCCTTTTTGTGCTGACGGTGTGGGTGTGGGTCCAAA
CGTCCAAAGGGGGTATCTATAACAATGAGTTTTGGCAGGAGTTGGTGCGA
TCGAATCCGTCGCATCTTTGCAAAACAGAGGAAAGACTGAACTGTGCAGC
ATATGAACTTGAACAATGCATGATAAGCGCGAACCAGACGAAAATGTTGT
TCTGCCCTGGCCATTTTTGCATTGATTTCTGTCGCATAACCACGGAAAAC
GTTAACGTGCAGCCTATATGTGCAGCATGTCGAGATGAGTCTTTAGACAC
GATTGATTCTTTTGTCAGTTGCAAAAGGAACGAGATACAGTTCACGAATA
CCACTGCATGTATGAACGTAGCTAACGCAGACCTACAGGCCGCCTACCGC
CGCTTATTGGCAGCGGCTTTGGTATCGTTTCTTTGGATCTTGGTTTCTGT
ATGCGTGTCTACATACCAGTACTGTTTTTCTTAA
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protein sequence of Ggra8800.t1

>Ggra8800.t1 ID=Ggra8800.t1|Name=Ggra8800.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=378bp
MSRSGENNQFEPQLSKGISVDVPTGSTIYDPAIISLREDFRAKVEERKAK
QLQQSPDNDIAIQSPMHVNVTSPVPRKSRKSRKSLFLRADNDAAESESED
LELGDLDGETELCCNGYIPLFPLLIFMNSVKILAGIAGMAIGVFQLITGG
NSVGVSSLERLVISGSFLFSIAFITIGVVLIISGLLGVVLFTIRSRTNSR
TAKRLDVVYHSGLFLLVIVLFVLFVLTVWVWVQTSKGGIYNNEFWQELVR
SNPSHLCKTEERLNCAAYELEQCMISANQTKMLFCPGHFCIDFCRITTEN
VNVQPICAACRDESLDTIDSFVSCKRNEIQFTNTTACMNVANADLQAAYR
RLLAAALVSFLWILVSVCVSTYQYCFS*
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mRNA from alignment at tig00000860_pilon:162193..163406+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8800.t1 ID=Ggra8800.t1|Name=Ggra8800.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1214bp|location=Sequence derived from alignment at tig00000860_pilon:162193..163406+ (Gracilaria gracilis GNS1m male)
ATGAGTCGCTCAGGGGAGAATAACCAATTCGAGCCACAGCTATCGAAAGG
GATAAGTGTCGATGTCCCCACTGGTTCAACGATATATGATCCGGCAATTA
TCTCCCTTCGTGAAGATTTCAGGGCAAAAGTCGAAGAAAGAAAAGCAAAG
CAACTTCAACAATCTCCAGACAATGACATTGCTATTCAAAGCCCCATGCA
CGTTAATGTTACATCCCCAGTACCGAGAAAGTCGAGAAAGTCAAGAAAGT
CGTTGTTTCTGAGAGCTGACAATGACGCTGCAGAATCGGAGTCTGAAGAC
CTAGAGCTTGGAGATTTGGATGGAGAAACCGAGCTTTGTTGTAATGGATA
CATCCCCTTGTTTCCCTTGTTGATATTTATGAACAGCGTCAAAATTGTAA
GTGTTCTTCCTGATGTTCTTGTTTGCGCACCTAACCACATCTGACCGATG
TCATCTTCGTGTGTTGATGATGCAAGCTGGCTGGAATAGCCGGAATGGCA
ATTGGAGTTTTTCAGTTGATCACTGGTGGCAATTCTGTTGGGGTCTCTTC
TCTGGAGAGATTGGTCATTTCAGGGTCCTTTCTATTCTCCATCGCGTTCA
TTACAATTGGAGTAGTGCTCATCATATCAGGACTTCTGGGAGTTGTCCTG
TTCACCATCCGTTCCCGAACTAATTCACGCACCGCAAAGAGGCTGGATGT
TGTTTATCACAGTGGGCTTTTCTTATTGGTCATTGTTCTCTTCGTCCTTT
TTGTGCTGACGGTGTGGGTGTGGGTCCAAACGTCCAAAGGGGGTATCTAT
AACAATGAGTTTTGGCAGGAGTTGGTGCGATCGAATCCGTCGCATCTTTG
CAAAACAGAGGAAAGACTGAACTGTGCAGCATATGAACTTGAACAATGCA
TGATAAGCGCGAACCAGACGAAAATGTTGTTCTGCCCTGGCCATTTTTGC
ATTGATTTCTGTCGCATAACCACGGAAAACGTTAACGTGCAGCCTATATG
TGCAGCATGTCGAGATGAGTCTTTAGACACGATTGATTCTTTTGTCAGTT
GCAAAAGGAACGAGATACAGTTCACGAATACCACTGCATGTATGAACGTA
GCTAACGCAGACCTACAGGCCGCCTACCGCCGCTTATTGGCAGCGGCTTT
GGTATCGTTTCTTTGGATCTTGGTTTCTGTATGCGTGTCTACATACCAGT
ACTGTTTTTCTTAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:162193..163406+

>Ggra8800.t1 ID=Ggra8800.t1|Name=Ggra8800.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1134bp|location=Sequence derived from alignment at tig00000860_pilon:162193..163406+ (Gracilaria gracilis GNS1m male)
ATGAGTCGCTCAGGGGAGAATAACCAATTCGAGCCACAGCTATCGAAAGG
GATAAGTGTCGATGTCCCCACTGGTTCAACGATATATGATCCGGCAATTA
TCTCCCTTCGTGAAGATTTCAGGGCAAAAGTCGAAGAAAGAAAAGCAAAG
CAACTTCAACAATCTCCAGACAATGACATTGCTATTCAAAGCCCCATGCA
CGTTAATGTTACATCCCCAGTACCGAGAAAGTCGAGAAAGTCAAGAAAGT
CGTTGTTTCTGAGAGCTGACAATGACGCTGCAGAATCGGAGTCTGAAGAC
CTAGAGCTTGGAGATTTGGATGGAGAAACCGAGCTTTGTTGTAATGGATA
CATCCCCTTGTTTCCCTTGTTGATATTTATGAACAGCGTCAAAATTCTGG
CTGGAATAGCCGGAATGGCAATTGGAGTTTTTCAGTTGATCACTGGTGGC
AATTCTGTTGGGGTCTCTTCTCTGGAGAGATTGGTCATTTCAGGGTCCTT
TCTATTCTCCATCGCGTTCATTACAATTGGAGTAGTGCTCATCATATCAG
GACTTCTGGGAGTTGTCCTGTTCACCATCCGTTCCCGAACTAATTCACGC
ACCGCAAAGAGGCTGGATGTTGTTTATCACAGTGGGCTTTTCTTATTGGT
CATTGTTCTCTTCGTCCTTTTTGTGCTGACGGTGTGGGTGTGGGTCCAAA
CGTCCAAAGGGGGTATCTATAACAATGAGTTTTGGCAGGAGTTGGTGCGA
TCGAATCCGTCGCATCTTTGCAAAACAGAGGAAAGACTGAACTGTGCAGC
ATATGAACTTGAACAATGCATGATAAGCGCGAACCAGACGAAAATGTTGT
TCTGCCCTGGCCATTTTTGCATTGATTTCTGTCGCATAACCACGGAAAAC
GTTAACGTGCAGCCTATATGTGCAGCATGTCGAGATGAGTCTTTAGACAC
GATTGATTCTTTTGTCAGTTGCAAAAGGAACGAGATACAGTTCACGAATA
CCACTGCATGTATGAACGTAGCTAACGCAGACCTACAGGCCGCCTACCGC
CGCTTATTGGCAGCGGCTTTGGTATCGTTTCTTTGGATCTTGGTTTCTGT
ATGCGTGTCTACATACCAGTACTGTTTTTCTTAA
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