Ggra8797.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8797.t1
Unique Name	Ggra8797.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	458

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:155303..156676 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	109760.SPPG_04473T0
Preferred name	NEP1
PFAMs	EMG1
Max annot lvl	4751\|Fungi
KEGG ko	ko:K14568
KEGG Pathway	ko03008,map03008
GOs	GO:0000154,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0001510,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005856,GO:0005874,GO:0005880,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0015630,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0019843,GO:0022613,GO:0030490,GO:0030684,GO:0030686,GO:0031167,GO:0031974,GO:0031981,GO:0032040,GO:0032259,GO:0032991,GO:0034399,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070037,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140098,GO:0140102,GO:1901360,GO:1901363,GO:1990904
Evalue	1.15e-65
EggNOG OGs	COG1756@1\|root,KOG3073@2759\|Eukaryota,38BYT@33154\|Opisthokonta,3NXBG@4751\|Fungi
EC	2.1.1.260
Description	Nucleolar essential protein 1
COG category	J
BRITE	ko00000,ko00001,ko01000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8797	Ggra8797	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 155303..156676 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8797.t1.start1	Ggra8797.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 155303..155305 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8797.t1.CDS1	Ggra8797.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 155303..156676 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8797.t1.exon1	Ggra8797.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 155303..156676 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8797.t1.stop1	Ggra8797.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 156674..156676 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8797.t1	Ggra8797.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 155303..156676 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:155303..156676+
coding sequence from alignment at tig00000860_pilon:155303..156676+

mRNA sequence

>Ggra8797.t1 ID=Ggra8797.t1|Name=Ggra8797.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=458bp
MTRTVSHTKSSSLLAVRLVLVRTADGSTQTLQANISPVLELRSYPSGLDF
RIVCKSRFEMGSSASLRNKRSSDVPRAKSTAKRKRPPTPASEIEPHVLNV
LTGNDTLKSDEPKALDQHSALQGSAKENVKTEHQKNGAEISNSDSGTSSS
DEATAEGETGINQLEIGKGSDAGAKDQTKQATQNGEQENAANVVLAKSGI
GTHIAPKRSVLPDPLPPDHAKKIKVTVLLQNANLETVKQSGRAGGFVLLN
CDDHRHLLQKTGRNANDARPDITHQCLLTLLDSPLNKEGRLKIYIRTAKN
VLIDVHPETRIPRTMKRFSGLMAELLEKLKVRGTSGSTPLLKVIRNPIAS
HLPVGTRKIVCTYNTENVVDVREHANAIAGMVLPSGKGESSAKNNVDFNV
AEHGEEVNVLYVVGAMAHGKVVEDWADEYICISEYPLSAANVCGRITYAY
ENLFGIM*

spliced messenger RNA

>Ggra8797.t1 ID=Ggra8797.t1|Name=Ggra8797.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1374bp|location=Sequence derived from alignment at tig00000860_pilon:155303..156676+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACACGTACTGTAAGCCACACGAAAAGCTCGTCGCTCCTCGCTGTTCG
TCTCGTTCTCGTGCGGACGGCGGACGGATCAACTCAAACCCTGCAGGCTA
ACATTTCTCCGGTCTTAGAACTCCGTTCTTACCCATCTGGACTGGACTTC
AGGATAGTGTGCAAATCTCGTTTCGAAATGGGCAGCTCAGCATCGCTCCG
AAACAAGAGAAGCTCAGACGTCCCACGCGCAAAGAGTACGGCAAAACGCA
AGAGACCACCAACCCCGGCTTCTGAAATTGAACCACATGTGCTTAACGTT
TTGACCGGGAATGATACACTGAAATCTGATGAGCCAAAAGCTCTCGATCA
GCATTCAGCACTGCAAGGATCAGCAAAAGAAAACGTGAAAACGGAGCACC
AGAAGAATGGAGCGGAGATAAGTAACAGTGATTCGGGAACTTCTTCGAGC
GACGAAGCGACAGCGGAAGGCGAAACAGGGATTAATCAGTTAGAAATAGG
GAAAGGTTCTGATGCTGGAGCAAAGGACCAAACAAAACAAGCAACGCAAA
ACGGAGAGCAAGAAAATGCTGCGAATGTTGTACTCGCAAAGTCTGGAATC
GGCACTCACATCGCACCAAAGCGTTCCGTATTGCCAGACCCATTACCACC
AGATCACGCGAAAAAAATCAAGGTAACCGTATTGTTACAAAATGCTAACC
TAGAAACGGTGAAGCAAAGCGGACGAGCAGGAGGTTTTGTATTGTTAAAT
TGTGACGACCATCGTCATTTGCTACAAAAGACCGGTCGAAATGCAAATGA
TGCACGTCCGGATATCACTCATCAATGTCTACTTACGTTGCTGGATAGCC
CTTTGAACAAAGAGGGTCGTTTAAAGATTTACATTCGAACGGCGAAGAAT
GTTTTGATTGATGTGCATCCGGAAACACGAATTCCTCGTACTATGAAAAG
ATTCTCGGGCCTGATGGCTGAGCTTTTGGAAAAGCTTAAGGTGCGAGGTA
CCTCTGGTTCTACACCATTGTTAAAGGTCATTCGTAATCCAATCGCGAGT
CACCTGCCTGTGGGAACGCGAAAGATCGTGTGCACATACAACACGGAGAA
TGTTGTCGATGTTCGAGAGCATGCAAACGCTATTGCCGGCATGGTGCTAC
CAAGTGGAAAAGGTGAGTCGTCTGCGAAAAATAACGTGGACTTCAATGTC
GCGGAACATGGAGAGGAAGTTAATGTTTTGTATGTAGTTGGGGCTATGGC
ACACGGTAAAGTTGTAGAGGACTGGGCGGATGAATATATTTGCATAAGTG
AGTATCCCCTCTCCGCTGCAAATGTCTGTGGCAGAATAACGTATGCCTAT
GAGAACCTCTTCGGAATCATGTAA

protein sequence of Ggra8797.t1

>Ggra8797.t1 ID=Ggra8797.t1|Name=Ggra8797.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=458bp
MTRTVSHTKSSSLLAVRLVLVRTADGSTQTLQANISPVLELRSYPSGLDF
RIVCKSRFEMGSSASLRNKRSSDVPRAKSTAKRKRPPTPASEIEPHVLNV
LTGNDTLKSDEPKALDQHSALQGSAKENVKTEHQKNGAEISNSDSGTSSS
DEATAEGETGINQLEIGKGSDAGAKDQTKQATQNGEQENAANVVLAKSGI
GTHIAPKRSVLPDPLPPDHAKKIKVTVLLQNANLETVKQSGRAGGFVLLN
CDDHRHLLQKTGRNANDARPDITHQCLLTLLDSPLNKEGRLKIYIRTAKN
VLIDVHPETRIPRTMKRFSGLMAELLEKLKVRGTSGSTPLLKVIRNPIAS
HLPVGTRKIVCTYNTENVVDVREHANAIAGMVLPSGKGESSAKNNVDFNV
AEHGEEVNVLYVVGAMAHGKVVEDWADEYICISEYPLSAANVCGRITYAY
ENLFGIM*

mRNA from alignment at tig00000860_pilon:155303..156676+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8797.t1 ID=Ggra8797.t1|Name=Ggra8797.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1374bp|location=Sequence derived from alignment at tig00000860_pilon:155303..156676+ (Gracilaria gracilis GNS1m male)
ATGACACGTACTGTAAGCCACACGAAAAGCTCGTCGCTCCTCGCTGTTCG
TCTCGTTCTCGTGCGGACGGCGGACGGATCAACTCAAACCCTGCAGGCTA
ACATTTCTCCGGTCTTAGAACTCCGTTCTTACCCATCTGGACTGGACTTC
AGGATAGTGTGCAAATCTCGTTTCGAAATGGGCAGCTCAGCATCGCTCCG
AAACAAGAGAAGCTCAGACGTCCCACGCGCAAAGAGTACGGCAAAACGCA
AGAGACCACCAACCCCGGCTTCTGAAATTGAACCACATGTGCTTAACGTT
TTGACCGGGAATGATACACTGAAATCTGATGAGCCAAAAGCTCTCGATCA
GCATTCAGCACTGCAAGGATCAGCAAAAGAAAACGTGAAAACGGAGCACC
AGAAGAATGGAGCGGAGATAAGTAACAGTGATTCGGGAACTTCTTCGAGC
GACGAAGCGACAGCGGAAGGCGAAACAGGGATTAATCAGTTAGAAATAGG
GAAAGGTTCTGATGCTGGAGCAAAGGACCAAACAAAACAAGCAACGCAAA
ACGGAGAGCAAGAAAATGCTGCGAATGTTGTACTCGCAAAGTCTGGAATC
GGCACTCACATCGCACCAAAGCGTTCCGTATTGCCAGACCCATTACCACC
AGATCACGCGAAAAAAATCAAGGTAACCGTATTGTTACAAAATGCTAACC
TAGAAACGGTGAAGCAAAGCGGACGAGCAGGAGGTTTTGTATTGTTAAAT
TGTGACGACCATCGTCATTTGCTACAAAAGACCGGTCGAAATGCAAATGA
TGCACGTCCGGATATCACTCATCAATGTCTACTTACGTTGCTGGATAGCC
CTTTGAACAAAGAGGGTCGTTTAAAGATTTACATTCGAACGGCGAAGAAT
GTTTTGATTGATGTGCATCCGGAAACACGAATTCCTCGTACTATGAAAAG
ATTCTCGGGCCTGATGGCTGAGCTTTTGGAAAAGCTTAAGGTGCGAGGTA
CCTCTGGTTCTACACCATTGTTAAAGGTCATTCGTAATCCAATCGCGAGT
CACCTGCCTGTGGGAACGCGAAAGATCGTGTGCACATACAACACGGAGAA
TGTTGTCGATGTTCGAGAGCATGCAAACGCTATTGCCGGCATGGTGCTAC
CAAGTGGAAAAGGTGAGTCGTCTGCGAAAAATAACGTGGACTTCAATGTC
GCGGAACATGGAGAGGAAGTTAATGTTTTGTATGTAGTTGGGGCTATGGC
ACACGGTAAAGTTGTAGAGGACTGGGCGGATGAATATATTTGCATAAGTG
AGTATCCCCTCTCCGCTGCAAATGTCTGTGGCAGAATAACGTATGCCTAT
GAGAACCTCTTCGGAATCATGTAA

Coding sequence (CDS) from alignment at tig00000860_pilon:155303..156676+

>Ggra8797.t1 ID=Ggra8797.t1|Name=Ggra8797.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1374bp|location=Sequence derived from alignment at tig00000860_pilon:155303..156676+ (Gracilaria gracilis GNS1m male)
ATGACACGTACTGTAAGCCACACGAAAAGCTCGTCGCTCCTCGCTGTTCG
TCTCGTTCTCGTGCGGACGGCGGACGGATCAACTCAAACCCTGCAGGCTA
ACATTTCTCCGGTCTTAGAACTCCGTTCTTACCCATCTGGACTGGACTTC
AGGATAGTGTGCAAATCTCGTTTCGAAATGGGCAGCTCAGCATCGCTCCG
AAACAAGAGAAGCTCAGACGTCCCACGCGCAAAGAGTACGGCAAAACGCA
AGAGACCACCAACCCCGGCTTCTGAAATTGAACCACATGTGCTTAACGTT
TTGACCGGGAATGATACACTGAAATCTGATGAGCCAAAAGCTCTCGATCA
GCATTCAGCACTGCAAGGATCAGCAAAAGAAAACGTGAAAACGGAGCACC
AGAAGAATGGAGCGGAGATAAGTAACAGTGATTCGGGAACTTCTTCGAGC
GACGAAGCGACAGCGGAAGGCGAAACAGGGATTAATCAGTTAGAAATAGG
GAAAGGTTCTGATGCTGGAGCAAAGGACCAAACAAAACAAGCAACGCAAA
ACGGAGAGCAAGAAAATGCTGCGAATGTTGTACTCGCAAAGTCTGGAATC
GGCACTCACATCGCACCAAAGCGTTCCGTATTGCCAGACCCATTACCACC
AGATCACGCGAAAAAAATCAAGGTAACCGTATTGTTACAAAATGCTAACC
TAGAAACGGTGAAGCAAAGCGGACGAGCAGGAGGTTTTGTATTGTTAAAT
TGTGACGACCATCGTCATTTGCTACAAAAGACCGGTCGAAATGCAAATGA
TGCACGTCCGGATATCACTCATCAATGTCTACTTACGTTGCTGGATAGCC
CTTTGAACAAAGAGGGTCGTTTAAAGATTTACATTCGAACGGCGAAGAAT
GTTTTGATTGATGTGCATCCGGAAACACGAATTCCTCGTACTATGAAAAG
ATTCTCGGGCCTGATGGCTGAGCTTTTGGAAAAGCTTAAGGTGCGAGGTA
CCTCTGGTTCTACACCATTGTTAAAGGTCATTCGTAATCCAATCGCGAGT
CACCTGCCTGTGGGAACGCGAAAGATCGTGTGCACATACAACACGGAGAA
TGTTGTCGATGTTCGAGAGCATGCAAACGCTATTGCCGGCATGGTGCTAC
CAAGTGGAAAAGGTGAGTCGTCTGCGAAAAATAACGTGGACTTCAATGTC
GCGGAACATGGAGAGGAAGTTAATGTTTTGTATGTAGTTGGGGCTATGGC
ACACGGTAAAGTTGTAGAGGACTGGGCGGATGAATATATTTGCATAAGTG
AGTATCCCCTCTCCGCTGCAAATGTCTGTGGCAGAATAACGTATGCCTAT
GAGAACCTCTTCGGAATCATGTAA