Ggra8796.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8796.t1
Unique NameGgra8796.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length204
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:145846..146670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9785.ENSLAFP00000008795
Preferred nameTMEM66
PFAMsSARAF
Max annot lvl33208|Metazoa
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0008150,GO:0010959,GO:0012505,GO:0016020,GO:0016021,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032879,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0051049,GO:0051924,GO:0065007,GO:0098827,GO:2001256
Evalue1.32e-20
EggNOG OGs28KQW@1|root,2QT6Y@2759|Eukaryota,38PN7@33154|Opisthokonta,3BDYH@33208|Metazoa,3CSU9@33213|Bilateria,489E2@7711|Chordata,497RR@7742|Vertebrata,3JF3W@40674|Mammalia,34VNF@311790|Afrotheria
DescriptionStore-operated calcium entry-associated regulatory
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8796Ggra8796Gracilaria gracilis GNS1m malegenetig00000860_pilon 145846..146670 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8796.t1Ggra8796.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 145846..146670 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8796.t1.start1Ggra8796.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 145846..145848 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8796.t1.CDS1Ggra8796.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 145846..146341 +
Ggra8796.t1.CDS2Ggra8796.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 146466..146529 +
Ggra8796.t1.CDS3Ggra8796.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000860_pilon 146619..146670 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8796.t1.exon1Ggra8796.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 145846..146341 +
Ggra8796.t1.exon2Ggra8796.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 146466..146529 +
Ggra8796.t1.exon3Ggra8796.t1.exon3Gracilaria gracilis GNS1m maleexontig00000860_pilon 146619..146670 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8796.t1.intron1Ggra8796.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 146342..146465 +
Ggra8796.t1.intron2Ggra8796.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000860_pilon 146530..146618 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8796.t1.stop1Ggra8796.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 146668..146670 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8796.t1 ID=Ggra8796.t1|Name=Ggra8796.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=204bp
MKSWLIGIILLIALTTSQAIAIFNETKAVTGAGTGSSSSGSTNDRVLLRS
ITALIFSENGRARSRHGTGEQQLQCVGGSASGLWWFTEYYPHAVQCQNIG
WDGASIQWSCEGHLSDKVEFGPDTAVICEPYDEDQDDGYVLRGSCRLDYT
INFKKFHMTFVHIIYDCVLILGLLWCYYQSRWWMRRRLKRKLKKRARDAQ
QSS*
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spliced messenger RNA

>Ggra8796.t1 ID=Ggra8796.t1|Name=Ggra8796.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=612bp|location=Sequence derived from alignment at tig00000860_pilon:145846..146670+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAATCGTGGTTGATTGGCATCATACTTCTCATCGCTCTCACTACCTC
GCAAGCAATCGCAATCTTCAATGAAACCAAGGCAGTGACAGGTGCTGGCA
CTGGTTCTTCCTCGTCTGGCTCCACTAATGACCGTGTGCTTTTGCGATCC
ATTACTGCCCTAATCTTCTCCGAGAATGGCCGAGCTCGTTCGAGACACGG
AACAGGCGAACAGCAATTACAATGTGTTGGAGGTTCCGCGTCTGGACTGT
GGTGGTTTACTGAGTACTACCCACACGCCGTGCAATGTCAGAATATAGGC
TGGGACGGTGCTAGTATTCAATGGTCTTGCGAGGGTCACTTGAGCGATAA
GGTTGAATTTGGTCCCGACACTGCTGTTATTTGCGAACCCTACGACGAGG
ACCAGGATGACGGCTACGTGTTGAGAGGCTCTTGCCGCCTAGATTATACC
ATTAACTTCAAGAAGTTCCACATGACCTTCGTCCATATCATATACGACTG
CGTGTTGATTTTGGGTCTATTGTGGTGCTACTACCAAAGCAGATGGTGGA
TGAGGAGACGTCTAAAGCGCAAGCTCAAGAAACGTGCCCGTGACGCTCAA
CAATCGTCTTAG
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protein sequence of Ggra8796.t1

>Ggra8796.t1 ID=Ggra8796.t1|Name=Ggra8796.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=204bp
MKSWLIGIILLIALTTSQAIAIFNETKAVTGAGTGSSSSGSTNDRVLLRS
ITALIFSENGRARSRHGTGEQQLQCVGGSASGLWWFTEYYPHAVQCQNIG
WDGASIQWSCEGHLSDKVEFGPDTAVICEPYDEDQDDGYVLRGSCRLDYT
INFKKFHMTFVHIIYDCVLILGLLWCYYQSRWWMRRRLKRKLKKRARDAQ
QSS*
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mRNA from alignment at tig00000860_pilon:145846..146670+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8796.t1 ID=Ggra8796.t1|Name=Ggra8796.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=825bp|location=Sequence derived from alignment at tig00000860_pilon:145846..146670+ (Gracilaria gracilis GNS1m male)
ATGAAATCGTGGTTGATTGGCATCATACTTCTCATCGCTCTCACTACCTC
GCAAGCAATCGCAATCTTCAATGAAACCAAGGCAGTGACAGGTGCTGGCA
CTGGTTCTTCCTCGTCTGGCTCCACTAATGACCGTGTGCTTTTGCGATCC
ATTACTGCCCTAATCTTCTCCGAGAATGGCCGAGCTCGTTCGAGACACGG
AACAGGCGAACAGCAATTACAATGTGTTGGAGGTTCCGCGTCTGGACTGT
GGTGGTTTACTGAGTACTACCCACACGCCGTGCAATGTCAGAATATAGGC
TGGGACGGTGCTAGTATTCAATGGTCTTGCGAGGGTCACTTGAGCGATAA
GGTTGAATTTGGTCCCGACACTGCTGTTATTTGCGAACCCTACGACGAGG
ACCAGGATGACGGCTACGTGTTGAGAGGCTCTTGCCGCCTAGATTATACC
ATTAACTTCAAGAAGTTCCACATGACCTTCGTCCATATCATATACGGTCC
GTTATCTTCATGCTTTGCGAGTATACGAAAGAACACCTTACGCATCTGGA
GGCACGAATCTAACctttctttcttctctttctttcttctctttctttct
tctctttctttctttcACAGACTGCGTGTTGATTTTGGGTCTATTGTGGT
GCTACTACCAAAGCAGATGGTGGATGAGGAGACGGTAAGTTTTCATGTGC
ACATGGCCTCAAGTTTTTTATTCAACTGTTGCTGACCTTTTCTCGCGTTG
CACCCTCGTTTTCCGACATCTAGTCTAAAGCGCAAGCTCAAGAAACGTGC
CCGTGACGCTCAACAATCGTCTTAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:145846..146670+

>Ggra8796.t1 ID=Ggra8796.t1|Name=Ggra8796.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=612bp|location=Sequence derived from alignment at tig00000860_pilon:145846..146670+ (Gracilaria gracilis GNS1m male)
ATGAAATCGTGGTTGATTGGCATCATACTTCTCATCGCTCTCACTACCTC
GCAAGCAATCGCAATCTTCAATGAAACCAAGGCAGTGACAGGTGCTGGCA
CTGGTTCTTCCTCGTCTGGCTCCACTAATGACCGTGTGCTTTTGCGATCC
ATTACTGCCCTAATCTTCTCCGAGAATGGCCGAGCTCGTTCGAGACACGG
AACAGGCGAACAGCAATTACAATGTGTTGGAGGTTCCGCGTCTGGACTGT
GGTGGTTTACTGAGTACTACCCACACGCCGTGCAATGTCAGAATATAGGC
TGGGACGGTGCTAGTATTCAATGGTCTTGCGAGGGTCACTTGAGCGATAA
GGTTGAATTTGGTCCCGACACTGCTGTTATTTGCGAACCCTACGACGAGG
ACCAGGATGACGGCTACGTGTTGAGAGGCTCTTGCCGCCTAGATTATACC
ATTAACTTCAAGAAGTTCCACATGACCTTCGTCCATATCATATACGACTG
CGTGTTGATTTTGGGTCTATTGTGGTGCTACTACCAAAGCAGATGGTGGA
TGAGGAGACGTCTAAAGCGCAAGCTCAAGAAACGTGCCCGTGACGCTCAA
CAATCGTCTTAG
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