Ggra8792.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8792.t1
Unique Name	Ggra8792.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	389

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:135337..136503 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3702.AT4G27970.1
PFAMs	SLAC1
Max annot lvl	35493\|Streptophyta
GOs	GO:0001101,GO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005253,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0006821,GO:0006873,GO:0006950,GO:0006970,GO:0008150,GO:0008308,GO:0008509,GO:0009414,GO:0009415,GO:0009628,GO:0009651,GO:0009987,GO:0010035,GO:0015075,GO:0015103,GO:0015267,GO:0015318,GO:0015698,GO:0016020,GO:0019725,GO:0022803,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0034220,GO:0042221,GO:0042592,GO:0044464,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071944,GO:0098656,GO:1901700
Evalue	1.76e-20
EggNOG OGs	28IA4@1\|root,2QQKN@2759\|Eukaryota,37JZS@33090\|Viridiplantae,3G826@35493\|Streptophyta,3HX9Y@3699\|Brassicales
Description	Voltage-dependent anion channel
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8792	Ggra8792	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 135337..136503 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8792.t1.start1	Ggra8792.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 135337..135339 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8792.t1.CDS1	Ggra8792.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 135337..136503 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8792.t1.exon1	Ggra8792.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 135337..136503 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8792.t1.stop1	Ggra8792.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 136501..136503 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8792.t1	Ggra8792.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 135337..136503 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:135337..136503+
coding sequence from alignment at tig00000860_pilon:135337..136503+

mRNA sequence

>Ggra8792.t1 ID=Ggra8792.t1|Name=Ggra8792.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=389bp
MDSHSVQPARWRQKVVQFDMSHNSIALAFYAVTATLRLATRVDLTSVVPD
IAFGISIVVVAICAALTLTRSYIFPAAFVQDFRNPRLVNFFYLPPIISSL
ALTSMPAAFRSYIPMTIVFYVIALYQTGLALYLYGNWLHKTSLSDTIYPL
IFMQTVGFFLLSIVASQLVLPQLSFFLLTAALLFWLLIFVTLFQHSPTTL
SKSNETPSPIFFLFLAPTAQATIATLFLLAARTVPKDFPGRTLLPTNPLP
WSVGAELAHYVNLFLYLLMLRLMPLWLNRPFSVVWWAYVFPLSGATGAIL
LRYEKVRETFWLVMTVASGSLTAAAMIIVTILTVRGIWNGTFPNNEKNRK
AYELFWKGRSTMSRMKVPEGVSSDSLPETTTTESMDNV*

spliced messenger RNA

>Ggra8792.t1 ID=Ggra8792.t1|Name=Ggra8792.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1167bp|location=Sequence derived from alignment at tig00000860_pilon:135337..136503+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTCCCACTCCGTTCAGCCGGCCCGGTGGCGACAGAAGGTGGTACA
GTTTGATATGTCGCACAACTCTATTGCGCTCGCCTTCTACGCTGTTACTG
CTACGCTCCGACTGGCTACTCGCGTTGATTTGACGTCGGTTGTGCCAGAT
ATTGCGTTTGGGATCTCCATTGTGGTTGTTGCGATATGTGCTGCTTTAAC
ACTCACACGTTCCTACATATTTCCGGCCGCCTTCGTCCAGGACTTTCGCA
ATCCTCGTCTGGTCAACTTCTTCTATCTGCCACCCATCATCAGTTCTTTG
GCGTTGACATCCATGCCGGCTGCATTTCGCTCATACATACCAATGACTAT
CGTGTTCTACGTGATCGCCTTGTATCAGACTGGTCTTGCGCTCTACTTGT
ACGGCAATTGGCTCCACAAAACTTCGCTTTCGGACACCATCTATCCGCTT
ATTTTCATGCAAACTGTCGGGTTTTTCCTGCTTTCCATCGTCGCCTCTCA
ACTCGTTCTACCGCAATTGTCATTCTTCCTTCTCACTGCCGCGCTGCTCT
TCTGGCTTCTAATTTTCGTTACTCTCTTTCAACACTCTCCCACAACTCTC
TCCAAGTCCAACGAGACCCCTTCTCCCATCTTCTTTCTGTTTCTGGCTCC
GACCGCGCAAGCCACCATCGCAACTCTCTTCCTCCTTGCAGCAAGAACTG
TACCAAAGGACTTTCCGGGACGTACACTGCTCCCAACAAATCCATTACCA
TGGTCAGTCGGTGCTGAACTGGCGCACTATGTCAATCTATTCTTGTACCT
ACTCATGCTGCGACTGATGCCACTGTGGCTCAATCGTCCATTCTCAGTCG
TCTGGTGGGCGTATGTCTTCCCATTGTCTGGTGCTACCGGAGCTATCCTA
CTACGCTATGAGAAGGTGCGTGAGACTTTCTGGCTCGTCATGACTGTAGC
TTCAGGATCCCTGACTGCTGCGGCCATGATCATTGTCACCATTCTTACGG
TACGAGGTATATGGAATGGTACCTTTCCGAACAACGAGAAAAATAGAAAG
GCTTACGAATTGTTTTGGAAGGGGCGAAGCACTATGTCACGGATGAAGGT
ACCTGAAGGAGTTTCTTCAGACAGCCTTCCGGAAACCACAACCACTGAAA
GTATGGACAATGTGTAG

protein sequence of Ggra8792.t1

>Ggra8792.t1 ID=Ggra8792.t1|Name=Ggra8792.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=389bp
MDSHSVQPARWRQKVVQFDMSHNSIALAFYAVTATLRLATRVDLTSVVPD
IAFGISIVVVAICAALTLTRSYIFPAAFVQDFRNPRLVNFFYLPPIISSL
ALTSMPAAFRSYIPMTIVFYVIALYQTGLALYLYGNWLHKTSLSDTIYPL
IFMQTVGFFLLSIVASQLVLPQLSFFLLTAALLFWLLIFVTLFQHSPTTL
SKSNETPSPIFFLFLAPTAQATIATLFLLAARTVPKDFPGRTLLPTNPLP
WSVGAELAHYVNLFLYLLMLRLMPLWLNRPFSVVWWAYVFPLSGATGAIL
LRYEKVRETFWLVMTVASGSLTAAAMIIVTILTVRGIWNGTFPNNEKNRK
AYELFWKGRSTMSRMKVPEGVSSDSLPETTTTESMDNV*

mRNA from alignment at tig00000860_pilon:135337..136503+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8792.t1 ID=Ggra8792.t1|Name=Ggra8792.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1167bp|location=Sequence derived from alignment at tig00000860_pilon:135337..136503+ (Gracilaria gracilis GNS1m male)
ATGGACTCCCACTCCGTTCAGCCGGCCCGGTGGCGACAGAAGGTGGTACA
GTTTGATATGTCGCACAACTCTATTGCGCTCGCCTTCTACGCTGTTACTG
CTACGCTCCGACTGGCTACTCGCGTTGATTTGACGTCGGTTGTGCCAGAT
ATTGCGTTTGGGATCTCCATTGTGGTTGTTGCGATATGTGCTGCTTTAAC
ACTCACACGTTCCTACATATTTCCGGCCGCCTTCGTCCAGGACTTTCGCA
ATCCTCGTCTGGTCAACTTCTTCTATCTGCCACCCATCATCAGTTCTTTG
GCGTTGACATCCATGCCGGCTGCATTTCGCTCATACATACCAATGACTAT
CGTGTTCTACGTGATCGCCTTGTATCAGACTGGTCTTGCGCTCTACTTGT
ACGGCAATTGGCTCCACAAAACTTCGCTTTCGGACACCATCTATCCGCTT
ATTTTCATGCAAACTGTCGGGTTTTTCCTGCTTTCCATCGTCGCCTCTCA
ACTCGTTCTACCGCAATTGTCATTCTTCCTTCTCACTGCCGCGCTGCTCT
TCTGGCTTCTAATTTTCGTTACTCTCTTTCAACACTCTCCCACAACTCTC
TCCAAGTCCAACGAGACCCCTTCTCCCATCTTCTTTCTGTTTCTGGCTCC
GACCGCGCAAGCCACCATCGCAACTCTCTTCCTCCTTGCAGCAAGAACTG
TACCAAAGGACTTTCCGGGACGTACACTGCTCCCAACAAATCCATTACCA
TGGTCAGTCGGTGCTGAACTGGCGCACTATGTCAATCTATTCTTGTACCT
ACTCATGCTGCGACTGATGCCACTGTGGCTCAATCGTCCATTCTCAGTCG
TCTGGTGGGCGTATGTCTTCCCATTGTCTGGTGCTACCGGAGCTATCCTA
CTACGCTATGAGAAGGTGCGTGAGACTTTCTGGCTCGTCATGACTGTAGC
TTCAGGATCCCTGACTGCTGCGGCCATGATCATTGTCACCATTCTTACGG
TACGAGGTATATGGAATGGTACCTTTCCGAACAACGAGAAAAATAGAAAG
GCTTACGAATTGTTTTGGAAGGGGCGAAGCACTATGTCACGGATGAAGGT
ACCTGAAGGAGTTTCTTCAGACAGCCTTCCGGAAACCACAACCACTGAAA
GTATGGACAATGTGTAG

Coding sequence (CDS) from alignment at tig00000860_pilon:135337..136503+

>Ggra8792.t1 ID=Ggra8792.t1|Name=Ggra8792.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1167bp|location=Sequence derived from alignment at tig00000860_pilon:135337..136503+ (Gracilaria gracilis GNS1m male)
ATGGACTCCCACTCCGTTCAGCCGGCCCGGTGGCGACAGAAGGTGGTACA
GTTTGATATGTCGCACAACTCTATTGCGCTCGCCTTCTACGCTGTTACTG
CTACGCTCCGACTGGCTACTCGCGTTGATTTGACGTCGGTTGTGCCAGAT
ATTGCGTTTGGGATCTCCATTGTGGTTGTTGCGATATGTGCTGCTTTAAC
ACTCACACGTTCCTACATATTTCCGGCCGCCTTCGTCCAGGACTTTCGCA
ATCCTCGTCTGGTCAACTTCTTCTATCTGCCACCCATCATCAGTTCTTTG
GCGTTGACATCCATGCCGGCTGCATTTCGCTCATACATACCAATGACTAT
CGTGTTCTACGTGATCGCCTTGTATCAGACTGGTCTTGCGCTCTACTTGT
ACGGCAATTGGCTCCACAAAACTTCGCTTTCGGACACCATCTATCCGCTT
ATTTTCATGCAAACTGTCGGGTTTTTCCTGCTTTCCATCGTCGCCTCTCA
ACTCGTTCTACCGCAATTGTCATTCTTCCTTCTCACTGCCGCGCTGCTCT
TCTGGCTTCTAATTTTCGTTACTCTCTTTCAACACTCTCCCACAACTCTC
TCCAAGTCCAACGAGACCCCTTCTCCCATCTTCTTTCTGTTTCTGGCTCC
GACCGCGCAAGCCACCATCGCAACTCTCTTCCTCCTTGCAGCAAGAACTG
TACCAAAGGACTTTCCGGGACGTACACTGCTCCCAACAAATCCATTACCA
TGGTCAGTCGGTGCTGAACTGGCGCACTATGTCAATCTATTCTTGTACCT
ACTCATGCTGCGACTGATGCCACTGTGGCTCAATCGTCCATTCTCAGTCG
TCTGGTGGGCGTATGTCTTCCCATTGTCTGGTGCTACCGGAGCTATCCTA
CTACGCTATGAGAAGGTGCGTGAGACTTTCTGGCTCGTCATGACTGTAGC
TTCAGGATCCCTGACTGCTGCGGCCATGATCATTGTCACCATTCTTACGG
TACGAGGTATATGGAATGGTACCTTTCCGAACAACGAGAAAAATAGAAAG
GCTTACGAATTGTTTTGGAAGGGGCGAAGCACTATGTCACGGATGAAGGT
ACCTGAAGGAGTTTCTTCAGACAGCCTTCCGGAAACCACAACCACTGAAA
GTATGGACAATGTGTAG