Ggra8791.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8791.t1
Unique NameGgra8791.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length300
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:127017..128030 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8791Ggra8791Gracilaria gracilis GNS1m malegenetig00000860_pilon 127017..128030 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8791.t1Ggra8791.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 127017..128030 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8791.t1.stop1Ggra8791.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 127017..127019 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8791.t1.CDS1Ggra8791.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 127017..127402 -
Ggra8791.t1.CDS2Ggra8791.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 127517..128030 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8791.t1.exon1Ggra8791.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 127017..127402 -
Ggra8791.t1.exon2Ggra8791.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 127517..128030 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8791.t1.intron1Ggra8791.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 127403..127516 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8791.t1.start1Ggra8791.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 128028..128030 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8791.t1 ID=Ggra8791.t1|Name=Ggra8791.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=300bp
MIDENSKFFQQAAFLIDYIVIMKINPQHNIVADTLPFNMEVVIATSILAH
AGSLAIDRFAPKFDAALSRSRETNQPQTPVTQSEPQPEPQPQPQASPVLE
RENAENSPQQQSSNSCSQPEPVEEGSVEFLQQRLKQLRNDAKKLNAPDTL
VQYARVTREANKVEKALNEKKAEQGLSATSSMGIDAMTSALAEMMKPGAG
VVRQGVTSQMLRMIPRIISFIFLWYYFSFQDTSTGKGIAMAVDCQALRPI
SFLFRKLPPTCFDDDWVCAAQTSQSPMCAISYSWAFILCNVVISVLLQA*
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spliced messenger RNA

>Ggra8791.t1 ID=Ggra8791.t1|Name=Ggra8791.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00000860_pilon:127017..128030- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGACGAGAATTCAAAGTTCTTTCAACAAGCTGCTTTCCTGATCGA
CTACATCGTCATCATGAAGATCAATCCACAACACAATATAGTAGCCGATA
CTCTACCATTTAACATGGAAGTCGTCATCGCAACCAGCATTCTGGCACAC
GCCGGCAGCCTGGCCATCGATCGATTCGCGCCCAAGTTTGACGCCGCCCT
CAGTCGATCACGGGAAACGAACCAACCGCAAACACCTGTTACTCAATCAG
AACCCCAGCCCGAGCCTCAGCCCCAACCACAGGCCTCACCAGTCCTAGAG
CGCGAAAACGCAGAAAATAGCCCTCAACAGCAAAGCTCCAATTCGTGCTC
GCAGCCAGAGCCAGTCGAAGAAGGAAGCGTCGAATTTTTGCAGCAACGGC
TAAAGCAGCTGCGAAATGATGCAAAGAAGCTCAATGCTCCGGACACCCTT
GTTCAATACGCTCGTGTTACTCGGGAGGCGAACAAGGTTGAAAAGGCTCT
CAACGAGAAGAAAGCTGAACAAGGATTAAGTGCAACAAGTTCAATGGGAA
TAGACGCCATGACAAGCGCGCTAGCTGAAATGATGAAACCAGGAGCGGGT
GTTGTACGACAAGGCGTTACAAGTCAAATGCTTAGAATGATACCGAGGAT
CATATCATTCATATTCCTATGGTATTATTTTTCATTTCAAGACACGTCTA
CGGGGAAAGGAATAGCGATGGCGGTGGACTGCCAAGCGTTGAGACCTATA
TCGTTTCTTTTCCGAAAGCTGCCACCGACTTGTTTCGATGACGATTGGGT
CTGTGCAGCTCAAACGTCGCAATCGCCAATGTGCGCCATTTCATATTCTT
GGGCGTTCATACTGTGCAACGTAGTAATCTCGGTATTGTTGCAGGCATAA
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protein sequence of Ggra8791.t1

>Ggra8791.t1 ID=Ggra8791.t1|Name=Ggra8791.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=300bp
MIDENSKFFQQAAFLIDYIVIMKINPQHNIVADTLPFNMEVVIATSILAH
AGSLAIDRFAPKFDAALSRSRETNQPQTPVTQSEPQPEPQPQPQASPVLE
RENAENSPQQQSSNSCSQPEPVEEGSVEFLQQRLKQLRNDAKKLNAPDTL
VQYARVTREANKVEKALNEKKAEQGLSATSSMGIDAMTSALAEMMKPGAG
VVRQGVTSQMLRMIPRIISFIFLWYYFSFQDTSTGKGIAMAVDCQALRPI
SFLFRKLPPTCFDDDWVCAAQTSQSPMCAISYSWAFILCNVVISVLLQA*
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mRNA from alignment at tig00000860_pilon:127017..128030-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8791.t1 ID=Ggra8791.t1|Name=Ggra8791.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1014bp|location=Sequence derived from alignment at tig00000860_pilon:127017..128030- (Gracilaria gracilis GNS1m male)
ATGATTGACGAGAATTCAAAGTTCTTTCAACAAGCTGCTTTCCTGATCGA
CTACATCGTCATCATGAAGATCAATCCACAACACAATATAGTAGCCGATA
CTCTACCATTTAACATGGAAGTCGTCATCGCAACCAGCATTCTGGCACAC
GCCGGCAGCCTGGCCATCGATCGATTCGCGCCCAAGTTTGACGCCGCCCT
CAGTCGATCACGGGAAACGAACCAACCGCAAACACCTGTTACTCAATCAG
AACCCCAGCCCGAGCCTCAGCCCCAACCACAGGCCTCACCAGTCCTAGAG
CGCGAAAACGCAGAAAATAGCCCTCAACAGCAAAGCTCCAATTCGTGCTC
GCAGCCAGAGCCAGTCGAAGAAGGAAGCGTCGAATTTTTGCAGCAACGGC
TAAAGCAGCTGCGAAATGATGCAAAGAAGCTCAATGCTCCGGACACCCTT
GTTCAATACGCTCGTGTTACTCGGGAGGCGAACAAGGTTGAAAAGGCTCT
CAACGAGAAGAAAGGTTAGTTCACAAAGGAATCAACGTTGTTTCAACACC
CAGCGAAAATGCGCTTGGACTCAAGAGATAGAAGAGCTGACCGTCAACGT
CTTCATTGTTTCATTCCATTCGCAACAGCTGAACAAGGATTAAGTGCAAC
AAGTTCAATGGGAATAGACGCCATGACAAGCGCGCTAGCTGAAATGATGA
AACCAGGAGCGGGTGTTGTACGACAAGGCGTTACAAGTCAAATGCTTAGA
ATGATACCGAGGATCATATCATTCATATTCCTATGGTATTATTTTTCATT
TCAAGACACGTCTACGGGGAAAGGAATAGCGATGGCGGTGGACTGCCAAG
CGTTGAGACCTATATCGTTTCTTTTCCGAAAGCTGCCACCGACTTGTTTC
GATGACGATTGGGTCTGTGCAGCTCAAACGTCGCAATCGCCAATGTGCGC
CATTTCATATTCTTGGGCGTTCATACTGTGCAACGTAGTAATCTCGGTAT
TGTTGCAGGCATAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:127017..128030-

>Ggra8791.t1 ID=Ggra8791.t1|Name=Ggra8791.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=900bp|location=Sequence derived from alignment at tig00000860_pilon:127017..128030- (Gracilaria gracilis GNS1m male)
ATGATTGACGAGAATTCAAAGTTCTTTCAACAAGCTGCTTTCCTGATCGA
CTACATCGTCATCATGAAGATCAATCCACAACACAATATAGTAGCCGATA
CTCTACCATTTAACATGGAAGTCGTCATCGCAACCAGCATTCTGGCACAC
GCCGGCAGCCTGGCCATCGATCGATTCGCGCCCAAGTTTGACGCCGCCCT
CAGTCGATCACGGGAAACGAACCAACCGCAAACACCTGTTACTCAATCAG
AACCCCAGCCCGAGCCTCAGCCCCAACCACAGGCCTCACCAGTCCTAGAG
CGCGAAAACGCAGAAAATAGCCCTCAACAGCAAAGCTCCAATTCGTGCTC
GCAGCCAGAGCCAGTCGAAGAAGGAAGCGTCGAATTTTTGCAGCAACGGC
TAAAGCAGCTGCGAAATGATGCAAAGAAGCTCAATGCTCCGGACACCCTT
GTTCAATACGCTCGTGTTACTCGGGAGGCGAACAAGGTTGAAAAGGCTCT
CAACGAGAAGAAAGCTGAACAAGGATTAAGTGCAACAAGTTCAATGGGAA
TAGACGCCATGACAAGCGCGCTAGCTGAAATGATGAAACCAGGAGCGGGT
GTTGTACGACAAGGCGTTACAAGTCAAATGCTTAGAATGATACCGAGGAT
CATATCATTCATATTCCTATGGTATTATTTTTCATTTCAAGACACGTCTA
CGGGGAAAGGAATAGCGATGGCGGTGGACTGCCAAGCGTTGAGACCTATA
TCGTTTCTTTTCCGAAAGCTGCCACCGACTTGTTTCGATGACGATTGGGT
CTGTGCAGCTCAAACGTCGCAATCGCCAATGTGCGCCATTTCATATTCTT
GGGCGTTCATACTGTGCAACGTAGTAATCTCGGTATTGTTGCAGGCATAA
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