Ggra8790.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8790.t1
Unique NameGgra8790.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length360
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:125689..126768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5762.XP_002673406.1
Preferred nameRFC4
PFAMsAAA,Rep_fac_C
Max annot lvl2759|Eukaryota
KEGG koko:K10755,ko:K14015
KEGG Pathwayko03030,ko03420,ko03430,ko04141,map03030,map03420,map03430,map04141
KEGG ModuleM00289,M00295,M00400,M00403
GOsGO:0000075,GO:0000076,GO:0000166,GO:0000228,GO:0000278,GO:0000723,GO:0000731,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005663,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006275,GO:0006281,GO:0006283,GO:0006289,GO:0006296,GO:0006297,GO:0006298,GO:0006301,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007093,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010389,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010948,GO:0010972,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019725,GO:0019899,GO:0019941,GO:0019985,GO:0022402,GO:0022616,GO:0030163,GO:0030894,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031389,GO:0031390,GO:0031391,GO:0031570,GO:0031625,GO:0031974,GO:0031981,GO:0032182,GO:0032200,GO:0032201,GO:0032991,GO:0032993,GO:0033260,GO:0033314,GO:0033554,GO:0033683,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0036094,GO:0042276,GO:0042592,GO:0042623,GO:0042769,GO:0043085,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043599,GO:0043601,GO:0043632,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044389,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044774,GO:0044786,GO:0044818,GO:0045786,GO:0045930,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051276,GO:0051338,GO:0051347,GO:0051603,GO:0051606,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0061860,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070914,GO:0070987,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090618,GO:0097159,GO:0098813,GO:0104004,GO:1900262,GO:1900264,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902296,GO:1902319,GO:1902494,GO:1902749,GO:1902750,GO:1902969,GO:1902983,GO:1903047,GO:1903460,GO:1904949,GO:2000112,GO:2000278,GO:2000573
Evalue2.29e-104
EggNOG OGsCOG0470@1|root,KOG0989@2759|Eukaryota
DescriptionDNA replication
COG categoryL
BRITEko00000,ko00001,ko00002,ko03032,ko03036,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8790Ggra8790Gracilaria gracilis GNS1m malegenetig00000860_pilon 125689..126768 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8790.t1.start1Ggra8790.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 125689..125691 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8790.t1.CDS1Ggra8790.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 125689..126768 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8790.t1.exon1Ggra8790.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 125689..126768 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8790.t1.stop1Ggra8790.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 126766..126768 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8790.t1Ggra8790.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 125689..126768 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8790.t1 ID=Ggra8790.t1|Name=Ggra8790.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=360bp
MKDSAQLWVEKYRPRAVSDVAHQEEVVATLQKAVKEPAGRGDLPHLLLYG
PPGTGKTSTALALCRDLFGPQNYRSRVLELNASDERGIKVVRDKIKVFAQ
IAVSSNVATKGSDGKSYPCPPYKVVILDEADAITTDAQTALRRTMEAHSR
VTRFIIICNYISRIIGPLASRCAKFRFNPLPLEAMKAHLHKIANAEHVNV
SEETLESLIEASEGDLRKAINTMQSAQRIQSDAALDIDSISAAACLVPPS
VVDAFDNSITAKGTTNASVRKAVDEILVEGYSSGQLLTQYADRLIGRIAS
PGINKLNDLQKAAMALVIADAENALIDGCDEKVQLYDIASRVSRIASTAD
GDIAALQKA*
back to top

spliced messenger RNA

>Ggra8790.t1 ID=Ggra8790.t1|Name=Ggra8790.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1080bp|location=Sequence derived from alignment at tig00000860_pilon:125689..126768+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGATAGTGCTCAACTGTGGGTCGAAAAATACCGACCACGTGCGGT
TTCCGACGTCGCTCACCAAGAAGAGGTAGTAGCTACTCTACAGAAAGCCG
TCAAAGAACCTGCTGGAAGGGGTGATCTTCCACATCTTTTGCTCTACGGA
CCTCCTGGAACCGGGAAGACTTCCACTGCGTTAGCTCTCTGTCGCGATTT
GTTTGGACCTCAGAACTACCGTTCGAGGGTTCTAGAGCTTAATGCGTCGG
ATGAGCGTGGAATCAAAGTCGTGCGTGACAAGATCAAGGTCTTCGCTCAG
ATAGCAGTATCTTCTAACGTGGCTACAAAAGGCTCTGATGGAAAATCGTA
TCCATGCCCACCGTACAAAGTAGTCATTTTGGATGAGGCTGATGCAATTA
CAACTGATGCACAGACAGCCCTTCGAAGAACGATGGAAGCCCACTCAAGA
GTAACCAGGTTCATTATCATATGTAACTATATCAGCCGCATTATTGGCCC
ACTTGCCTCAAGATGTGCCAAGTTTCGGTTCAACCCTTTACCCCTTGAGG
CAATGAAAGCTCATCTGCACAAAATCGCCAACGCTGAACACGTCAATGTA
TCCGAGGAGACTCTGGAATCGTTAATAGAGGCGTCCGAAGGCGATCTGCG
AAAGGCGATTAACACGATGCAGTCTGCACAGCGAATACAATCTGACGCTG
CACTTGATATCGACAGCATCTCTGCTGCCGCATGTCTAGTGCCACCTTCA
GTTGTGGATGCCTTTGATAATTCAATAACTGCAAAGGGAACAACGAATGC
ATCCGTTCGCAAGGCAGTTGATGAAATTTTGGTAGAGGGATATTCTTCTG
GTCAACTCTTAACGCAGTATGCGGATCGTCTCATTGGTAGAATAGCAAGC
CCTGGCATCAACAAGCTGAATGACTTGCAAAAGGCGGCAATGGCACTGGT
AATAGCAGACGCAGAGAATGCTCTTATTGATGGCTGTGACGAGAAAGTGC
AGCTTTACGACATTGCTTCTAGGGTTTCTCGAATAGCAAGTACTGCGGAT
GGCGATATAGCAGCGCTGCAAAAAGCCTGA
back to top

protein sequence of Ggra8790.t1

>Ggra8790.t1 ID=Ggra8790.t1|Name=Ggra8790.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=360bp
MKDSAQLWVEKYRPRAVSDVAHQEEVVATLQKAVKEPAGRGDLPHLLLYG
PPGTGKTSTALALCRDLFGPQNYRSRVLELNASDERGIKVVRDKIKVFAQ
IAVSSNVATKGSDGKSYPCPPYKVVILDEADAITTDAQTALRRTMEAHSR
VTRFIIICNYISRIIGPLASRCAKFRFNPLPLEAMKAHLHKIANAEHVNV
SEETLESLIEASEGDLRKAINTMQSAQRIQSDAALDIDSISAAACLVPPS
VVDAFDNSITAKGTTNASVRKAVDEILVEGYSSGQLLTQYADRLIGRIAS
PGINKLNDLQKAAMALVIADAENALIDGCDEKVQLYDIASRVSRIASTAD
GDIAALQKA*
back to top

mRNA from alignment at tig00000860_pilon:125689..126768+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8790.t1 ID=Ggra8790.t1|Name=Ggra8790.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1080bp|location=Sequence derived from alignment at tig00000860_pilon:125689..126768+ (Gracilaria gracilis GNS1m male)
ATGAAGGATAGTGCTCAACTGTGGGTCGAAAAATACCGACCACGTGCGGT
TTCCGACGTCGCTCACCAAGAAGAGGTAGTAGCTACTCTACAGAAAGCCG
TCAAAGAACCTGCTGGAAGGGGTGATCTTCCACATCTTTTGCTCTACGGA
CCTCCTGGAACCGGGAAGACTTCCACTGCGTTAGCTCTCTGTCGCGATTT
GTTTGGACCTCAGAACTACCGTTCGAGGGTTCTAGAGCTTAATGCGTCGG
ATGAGCGTGGAATCAAAGTCGTGCGTGACAAGATCAAGGTCTTCGCTCAG
ATAGCAGTATCTTCTAACGTGGCTACAAAAGGCTCTGATGGAAAATCGTA
TCCATGCCCACCGTACAAAGTAGTCATTTTGGATGAGGCTGATGCAATTA
CAACTGATGCACAGACAGCCCTTCGAAGAACGATGGAAGCCCACTCAAGA
GTAACCAGGTTCATTATCATATGTAACTATATCAGCCGCATTATTGGCCC
ACTTGCCTCAAGATGTGCCAAGTTTCGGTTCAACCCTTTACCCCTTGAGG
CAATGAAAGCTCATCTGCACAAAATCGCCAACGCTGAACACGTCAATGTA
TCCGAGGAGACTCTGGAATCGTTAATAGAGGCGTCCGAAGGCGATCTGCG
AAAGGCGATTAACACGATGCAGTCTGCACAGCGAATACAATCTGACGCTG
CACTTGATATCGACAGCATCTCTGCTGCCGCATGTCTAGTGCCACCTTCA
GTTGTGGATGCCTTTGATAATTCAATAACTGCAAAGGGAACAACGAATGC
ATCCGTTCGCAAGGCAGTTGATGAAATTTTGGTAGAGGGATATTCTTCTG
GTCAACTCTTAACGCAGTATGCGGATCGTCTCATTGGTAGAATAGCAAGC
CCTGGCATCAACAAGCTGAATGACTTGCAAAAGGCGGCAATGGCACTGGT
AATAGCAGACGCAGAGAATGCTCTTATTGATGGCTGTGACGAGAAAGTGC
AGCTTTACGACATTGCTTCTAGGGTTTCTCGAATAGCAAGTACTGCGGAT
GGCGATATAGCAGCGCTGCAAAAAGCCTGA
back to top

Coding sequence (CDS) from alignment at tig00000860_pilon:125689..126768+

>Ggra8790.t1 ID=Ggra8790.t1|Name=Ggra8790.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1080bp|location=Sequence derived from alignment at tig00000860_pilon:125689..126768+ (Gracilaria gracilis GNS1m male)
ATGAAGGATAGTGCTCAACTGTGGGTCGAAAAATACCGACCACGTGCGGT
TTCCGACGTCGCTCACCAAGAAGAGGTAGTAGCTACTCTACAGAAAGCCG
TCAAAGAACCTGCTGGAAGGGGTGATCTTCCACATCTTTTGCTCTACGGA
CCTCCTGGAACCGGGAAGACTTCCACTGCGTTAGCTCTCTGTCGCGATTT
GTTTGGACCTCAGAACTACCGTTCGAGGGTTCTAGAGCTTAATGCGTCGG
ATGAGCGTGGAATCAAAGTCGTGCGTGACAAGATCAAGGTCTTCGCTCAG
ATAGCAGTATCTTCTAACGTGGCTACAAAAGGCTCTGATGGAAAATCGTA
TCCATGCCCACCGTACAAAGTAGTCATTTTGGATGAGGCTGATGCAATTA
CAACTGATGCACAGACAGCCCTTCGAAGAACGATGGAAGCCCACTCAAGA
GTAACCAGGTTCATTATCATATGTAACTATATCAGCCGCATTATTGGCCC
ACTTGCCTCAAGATGTGCCAAGTTTCGGTTCAACCCTTTACCCCTTGAGG
CAATGAAAGCTCATCTGCACAAAATCGCCAACGCTGAACACGTCAATGTA
TCCGAGGAGACTCTGGAATCGTTAATAGAGGCGTCCGAAGGCGATCTGCG
AAAGGCGATTAACACGATGCAGTCTGCACAGCGAATACAATCTGACGCTG
CACTTGATATCGACAGCATCTCTGCTGCCGCATGTCTAGTGCCACCTTCA
GTTGTGGATGCCTTTGATAATTCAATAACTGCAAAGGGAACAACGAATGC
ATCCGTTCGCAAGGCAGTTGATGAAATTTTGGTAGAGGGATATTCTTCTG
GTCAACTCTTAACGCAGTATGCGGATCGTCTCATTGGTAGAATAGCAAGC
CCTGGCATCAACAAGCTGAATGACTTGCAAAAGGCGGCAATGGCACTGGT
AATAGCAGACGCAGAGAATGCTCTTATTGATGGCTGTGACGAGAAAGTGC
AGCTTTACGACATTGCTTCTAGGGTTTCTCGAATAGCAAGTACTGCGGAT
GGCGATATAGCAGCGCTGCAAAAAGCCTGA
back to top