Ggra879.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra879.t1
Unique NameGgra879.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length614
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000212_piloncontigtig00000212_pilon:42642..44785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra879Ggra879Gracilaria gracilis GNS1m malegenetig00000212_pilon 42642..44785 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra879.t1Ggra879.t1Gracilaria gracilis GNS1m malepolypeptidetig00000212_pilon 42642..44785 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra879.t1.stop1Ggra879.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000212_pilon 42642..42644 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra879.t1.CDS1Ggra879.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000212_pilon 42642..43754 -
Ggra879.t1.CDS2Ggra879.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000212_pilon 43943..44497 -
Ggra879.t1.CDS3Ggra879.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000212_pilon 44612..44785 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra879.t1.exon1Ggra879.t1.exon1Gracilaria gracilis GNS1m maleexontig00000212_pilon 42642..43754 -
Ggra879.t1.exon2Ggra879.t1.exon2Gracilaria gracilis GNS1m maleexontig00000212_pilon 43943..44497 -
Ggra879.t1.exon3Ggra879.t1.exon3Gracilaria gracilis GNS1m maleexontig00000212_pilon 44612..44785 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra879.t1.intron1Ggra879.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000212_pilon 43755..43942 -
Ggra879.t1.intron2Ggra879.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000212_pilon 44498..44611 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra879.t1.start1Ggra879.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000212_pilon 44783..44785 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra879.t1 ID=Ggra879.t1|Name=Ggra879.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=614bp
MHSSACAPPALPPDPDDLFTPPPHLRVGQVPAYVWSVLRLTSTNADFAWC
TVCRKWLRYRLDFNASYINALYKHCRSQHHVGHDGKLHPLHALLPPPPPP
SSAAAFHPSAHHRAAVVAAAVAPASAPALHARACAAPAAPAAPAAPAAPA
FRPLSAAPPIADGKSRALAGLHAVLSNRVLSSPSARAPPPLQLPQLPPPQ
LPQLPPPQLPPPLPPQPPPQPPQPPQPPPPPVSAEQIISGIHACQITEPV
RKVAERAQRLISKGSNLCFIEAHFSVPNSVEEAFEIMKKGTNDCSKRQMN
HNQPDLYYKSWSHTQFFAAQMAALGFGFRRCNLRRCLGKPAPPVEQWLKL
ERVVMRSASLQEAAACASASAAATAAAATAAAVERRAAAGGAPGAVAAVA
RAGGVQPGVAGAGRVAHNARTAAAAAVAAQNGPQSRAIAARSGGATTAAV
VHNGGAAAGARVGHNNAAAGAAVGHKGGAAGAAVGHNGGAAGAGAVERRG
GAGGGGVGPNGGAAGAGVGVGRHGGAAGTGVGHNGGAAVRVGRNGGSAAG
GVGGNEAEAAAGGSDGGRGDGAVATTRNADSGSVRRDGTVAGGGDGDGGA
ADAVGAAEVIDLT*
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spliced messenger RNA

>Ggra879.t1 ID=Ggra879.t1|Name=Ggra879.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1842bp|location=Sequence derived from alignment at tig00000212_pilon:42642..44785- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTCCAGCGCGTGCGCGCCGCCCGCGCTGCCGCCAGACCCCGACGA
CCTCTTCACCCCGCCGCCACACCTGCGCGTCGGCCAGGTGCCCGCGTACG
TGTGGTCCGTACTACGACTCACCTCCACCAATGCCGACTTTGCGTGGTGC
ACCGTCTGTCGGAAATGGCTGCGCTACCGACTGGATTTCAATGCGTCCTA
CATCAACGCGCTGTACAAACACTGCCGCTCGCAGCACCATGTCGGCCACG
ACGGCAAACTTCATCCGCTGCACGCCTTGCTCCCGCCCCCACCGCCGCCC
TCATCCGCCGCCGCCTTCCACCCGTCCGCCCACCACCGCGCCGCCGTCGT
CGCCGCCGCTGTCGCCCCCGCATCTGCGCCCGCCCTCCATGCGCGCGCGT
GCGCCGCGCCCGCCGCACCCGCCGCACCCGCCGCACCCGCCGCACCCGCC
TTCCGCCCCCTGTCTGCGGCGCCCCCTATCGCCGACGGCAAGTCGCGCGC
GCTTGCTGGCCTGCACGCCGTGCTGTCCAACCGCGTACTGTCGTCGCCGT
CCGCGCGCGCGCCGCCGCCGCTCCAGCTGCCGCAGCTGCCACCACCGCAG
CTGCCGCAGCTGCCACCACCGCAGCTGCCGCCGCCGCTGCCACCGCAGCC
GCCGCCGCAGCCGCCGCAGCCGCCGCAGCCGCCGCCGCCGCCCGTCAGCG
CCGAGCAGATCATCTCCGGCATCCACGCCTGTCAGATCACCGAGCCCGTG
CGCAAGGTGGCCGAGCGCGCGCAGCGTCTCATCAGCAAGGGCTCCAACCT
GTGCTTCATCGAGGCGCACTTCTCCGTGCCCAACAGCGTGGAGGAGGCGT
TCGAAATCATGAAAAAGGGCACCAATGACTGCTCCAAGCGCCAGATGAAC
CACAACCAACCCGACCTGTATTATAAGAGCTGGAGCCACACGCAGTTCTT
CGCGGCGCAGATGGCCGCGCTGGGCTTTGGCTTTCGCCGCTGCAACTTGA
GGCGCTGCTTGGGCAAGCCGGCGCCGCCCGTCGAGCAGTGGCTCAAGCTG
GAGCGCGTCGTGATGAGGTCGGCTTCGCTGCAAGAGGCGGCTGCGTGTGC
GTCCGCTTCTGCCGCCGCCACCGCCGCTGCTGCCACTGCGGCCGCCGTCG
AGCGCCGCGCCGCGGCTGGTGGCGCGCCGGGGGCTGTGGCGGCTGTCGCG
CGTGCTGGCGGCGTGCAGCCGGGTGTGGCTGGCGCTGGGCGCGTTGCGCA
CAACGCGCGAACGGCTGCTGCTGCGGCTGTTGCTGCACAGAATGGGCCAC
AATCGCGTGCAATTGCTGCGCGCAGTGGCGGCGCCACTACGGCAGCTGTT
GTACACAATGGCGGAGCCGCTGCGGGTGCTAGAGTTGGACACAATAACGC
AGCTGCTGGTGCTGCAGTTGGGCACAAGGGCGGAGCTGCTGGTGCTGCAG
TTGGACACAATGGTGGAGCTGCTGGCGCTGGAGCTGTTGAACGGCGTGGC
GGGGCTGGTGGTGGTGGAGTTGGACCGAATGGCGGAGCTGCAGGTGCTGG
AGTTGGAGTTGGACGGCATGGCGGCGCTGCTGGTACTGGAGTTGGACACA
ATGGTGGAGCTGCTGTTAGAGTTGGACGCAATGGGGGATCCGCTGCAGGA
GGTGTTGGAGGCAATGAAGCAGAAGCGGCGGCGGGCGGTAGTGATGGTGG
TAGGGGTGATGGAGCAGTGGCTACAACACGTAATGCGGACAGTGGTAGTG
TGCGGCGCGATGGGACAGTTGCTGGCGGTGGTGACGGTGATGGCGGTGCA
GCAGATGCGGTGGGCGCGGCCGAGGTGATCGATCTGACATAA
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protein sequence of Ggra879.t1

>Ggra879.t1 ID=Ggra879.t1|Name=Ggra879.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=614bp
MHSSACAPPALPPDPDDLFTPPPHLRVGQVPAYVWSVLRLTSTNADFAWC
TVCRKWLRYRLDFNASYINALYKHCRSQHHVGHDGKLHPLHALLPPPPPP
SSAAAFHPSAHHRAAVVAAAVAPASAPALHARACAAPAAPAAPAAPAAPA
FRPLSAAPPIADGKSRALAGLHAVLSNRVLSSPSARAPPPLQLPQLPPPQ
LPQLPPPQLPPPLPPQPPPQPPQPPQPPPPPVSAEQIISGIHACQITEPV
RKVAERAQRLISKGSNLCFIEAHFSVPNSVEEAFEIMKKGTNDCSKRQMN
HNQPDLYYKSWSHTQFFAAQMAALGFGFRRCNLRRCLGKPAPPVEQWLKL
ERVVMRSASLQEAAACASASAAATAAAATAAAVERRAAAGGAPGAVAAVA
RAGGVQPGVAGAGRVAHNARTAAAAAVAAQNGPQSRAIAARSGGATTAAV
VHNGGAAAGARVGHNNAAAGAAVGHKGGAAGAAVGHNGGAAGAGAVERRG
GAGGGGVGPNGGAAGAGVGVGRHGGAAGTGVGHNGGAAVRVGRNGGSAAG
GVGGNEAEAAAGGSDGGRGDGAVATTRNADSGSVRRDGTVAGGGDGDGGA
ADAVGAAEVIDLT*
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mRNA from alignment at tig00000212_pilon:42642..44785-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra879.t1 ID=Ggra879.t1|Name=Ggra879.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2144bp|location=Sequence derived from alignment at tig00000212_pilon:42642..44785- (Gracilaria gracilis GNS1m male)
ATGCATTCCAGCGCGTGCGCGCCGCCCGCGCTGCCGCCAGACCCCGACGA
CCTCTTCACCCCGCCGCCACACCTGCGCGTCGGCCAGGTGCCCGCGTACG
TGTGGTCCGTACTACGACTCACCTCCACCAATGCCGACTTTGCGTGGTGC
ACCGTCTGTCGGAAATGGCTGCGCGTACGTGTCCCGCTCCCCCCCCCCTA
GCTGTAGCGTTTACCGTGTAGCTGATTATTGTCACCACAACACACACCAA
ACTGACGCCGCGCTCATTTTTTTGGCGCGCTTTTTTAGTACCGACTGGAT
TTCAATGCGTCCTACATCAACGCGCTGTACAAACACTGCCGCTCGCAGCA
CCATGTCGGCCACGACGGCAAACTTCATCCGCTGCACGCCTTGCTCCCGC
CCCCACCGCCGCCCTCATCCGCCGCCGCCTTCCACCCGTCCGCCCACCAC
CGCGCCGCCGTCGTCGCCGCCGCTGTCGCCCCCGCATCTGCGCCCGCCCT
CCATGCGCGCGCGTGCGCCGCGCCCGCCGCACCCGCCGCACCCGCCGCAC
CCGCCGCACCCGCCTTCCGCCCCCTGTCTGCGGCGCCCCCTATCGCCGAC
GGCAAGTCGCGCGCGCTTGCTGGCCTGCACGCCGTGCTGTCCAACCGCGT
ACTGTCGTCGCCGTCCGCGCGCGCGCCGCCGCCGCTCCAGCTGCCGCAGC
TGCCACCACCGCAGCTGCCGCAGCTGCCACCACCGCAGCTGCCGCCGCCG
CTGCCACCGCAGCCGCCGCCGCAGCCGCCGCAGCCGCCGCAGCCGCCGCC
GCCGCCCGTCAGCGCCGAGCAGATCATCTCCGGCATCCACGCCGTCATTG
CCGCGCAGCCCCAACGCGCGCCGCGTCGTCTCCGCCGCCCGCCCCGCCCT
CATCGCGCGCCGCGCGCCTTGTGCCGCCGCCGCCGCCGCCGCCGCCGCTG
CGCGTGGCTGGCGCCGACGCGCGCGTTGGCTGCGCGCGCGCCGCGCATGC
GCCGCGCTATGTGCGGCGCGTCGTGCGCCAGTGTCAGATCACCGAGCCCG
TGCGCAAGGTGGCCGAGCGCGCGCAGCGTCTCATCAGCAAGGGCTCCAAC
CTGTGCTTCATCGAGGCGCACTTCTCCGTGCCCAACAGCGTGGAGGAGGC
GTTCGAAATCATGAAAAAGGGCACCAATGACTGCTCCAAGCGCCAGATGA
ACCACAACCAACCCGACCTGTATTATAAGAGCTGGAGCCACACGCAGTTC
TTCGCGGCGCAGATGGCCGCGCTGGGCTTTGGCTTTCGCCGCTGCAACTT
GAGGCGCTGCTTGGGCAAGCCGGCGCCGCCCGTCGAGCAGTGGCTCAAGC
TGGAGCGCGTCGTGATGAGGTCGGCTTCGCTGCAAGAGGCGGCTGCGTGT
GCGTCCGCTTCTGCCGCCGCCACCGCCGCTGCTGCCACTGCGGCCGCCGT
CGAGCGCCGCGCCGCGGCTGGTGGCGCGCCGGGGGCTGTGGCGGCTGTCG
CGCGTGCTGGCGGCGTGCAGCCGGGTGTGGCTGGCGCTGGGCGCGTTGCG
CACAACGCGCGAACGGCTGCTGCTGCGGCTGTTGCTGCACAGAATGGGCC
ACAATCGCGTGCAATTGCTGCGCGCAGTGGCGGCGCCACTACGGCAGCTG
TTGTACACAATGGCGGAGCCGCTGCGGGTGCTAGAGTTGGACACAATAAC
GCAGCTGCTGGTGCTGCAGTTGGGCACAAGGGCGGAGCTGCTGGTGCTGC
AGTTGGACACAATGGTGGAGCTGCTGGCGCTGGAGCTGTTGAACGGCGTG
GCGGGGCTGGTGGTGGTGGAGTTGGACCGAATGGCGGAGCTGCAGGTGCT
GGAGTTGGAGTTGGACGGCATGGCGGCGCTGCTGGTACTGGAGTTGGACA
CAATGGTGGAGCTGCTGTTAGAGTTGGACGCAATGGGGGATCCGCTGCAG
GAGGTGTTGGAGGCAATGAAGCAGAAGCGGCGGCGGGCGGTAGTGATGGT
GGTAGGGGTGATGGAGCAGTGGCTACAACACGTAATGCGGACAGTGGTAG
TGTGCGGCGCGATGGGACAGTTGCTGGCGGTGGTGACGGTGATGGCGGTG
CAGCAGATGCGGTGGGCGCGGCCGAGGTGATCGATCTGACATAA
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Coding sequence (CDS) from alignment at tig00000212_pilon:42642..44785-

>Ggra879.t1 ID=Ggra879.t1|Name=Ggra879.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1842bp|location=Sequence derived from alignment at tig00000212_pilon:42642..44785- (Gracilaria gracilis GNS1m male)
ATGCATTCCAGCGCGTGCGCGCCGCCCGCGCTGCCGCCAGACCCCGACGA
CCTCTTCACCCCGCCGCCACACCTGCGCGTCGGCCAGGTGCCCGCGTACG
TGTGGTCCGTACTACGACTCACCTCCACCAATGCCGACTTTGCGTGGTGC
ACCGTCTGTCGGAAATGGCTGCGCTACCGACTGGATTTCAATGCGTCCTA
CATCAACGCGCTGTACAAACACTGCCGCTCGCAGCACCATGTCGGCCACG
ACGGCAAACTTCATCCGCTGCACGCCTTGCTCCCGCCCCCACCGCCGCCC
TCATCCGCCGCCGCCTTCCACCCGTCCGCCCACCACCGCGCCGCCGTCGT
CGCCGCCGCTGTCGCCCCCGCATCTGCGCCCGCCCTCCATGCGCGCGCGT
GCGCCGCGCCCGCCGCACCCGCCGCACCCGCCGCACCCGCCGCACCCGCC
TTCCGCCCCCTGTCTGCGGCGCCCCCTATCGCCGACGGCAAGTCGCGCGC
GCTTGCTGGCCTGCACGCCGTGCTGTCCAACCGCGTACTGTCGTCGCCGT
CCGCGCGCGCGCCGCCGCCGCTCCAGCTGCCGCAGCTGCCACCACCGCAG
CTGCCGCAGCTGCCACCACCGCAGCTGCCGCCGCCGCTGCCACCGCAGCC
GCCGCCGCAGCCGCCGCAGCCGCCGCAGCCGCCGCCGCCGCCCGTCAGCG
CCGAGCAGATCATCTCCGGCATCCACGCCTGTCAGATCACCGAGCCCGTG
CGCAAGGTGGCCGAGCGCGCGCAGCGTCTCATCAGCAAGGGCTCCAACCT
GTGCTTCATCGAGGCGCACTTCTCCGTGCCCAACAGCGTGGAGGAGGCGT
TCGAAATCATGAAAAAGGGCACCAATGACTGCTCCAAGCGCCAGATGAAC
CACAACCAACCCGACCTGTATTATAAGAGCTGGAGCCACACGCAGTTCTT
CGCGGCGCAGATGGCCGCGCTGGGCTTTGGCTTTCGCCGCTGCAACTTGA
GGCGCTGCTTGGGCAAGCCGGCGCCGCCCGTCGAGCAGTGGCTCAAGCTG
GAGCGCGTCGTGATGAGGTCGGCTTCGCTGCAAGAGGCGGCTGCGTGTGC
GTCCGCTTCTGCCGCCGCCACCGCCGCTGCTGCCACTGCGGCCGCCGTCG
AGCGCCGCGCCGCGGCTGGTGGCGCGCCGGGGGCTGTGGCGGCTGTCGCG
CGTGCTGGCGGCGTGCAGCCGGGTGTGGCTGGCGCTGGGCGCGTTGCGCA
CAACGCGCGAACGGCTGCTGCTGCGGCTGTTGCTGCACAGAATGGGCCAC
AATCGCGTGCAATTGCTGCGCGCAGTGGCGGCGCCACTACGGCAGCTGTT
GTACACAATGGCGGAGCCGCTGCGGGTGCTAGAGTTGGACACAATAACGC
AGCTGCTGGTGCTGCAGTTGGGCACAAGGGCGGAGCTGCTGGTGCTGCAG
TTGGACACAATGGTGGAGCTGCTGGCGCTGGAGCTGTTGAACGGCGTGGC
GGGGCTGGTGGTGGTGGAGTTGGACCGAATGGCGGAGCTGCAGGTGCTGG
AGTTGGAGTTGGACGGCATGGCGGCGCTGCTGGTACTGGAGTTGGACACA
ATGGTGGAGCTGCTGTTAGAGTTGGACGCAATGGGGGATCCGCTGCAGGA
GGTGTTGGAGGCAATGAAGCAGAAGCGGCGGCGGGCGGTAGTGATGGTGG
TAGGGGTGATGGAGCAGTGGCTACAACACGTAATGCGGACAGTGGTAGTG
TGCGGCGCGATGGGACAGTTGCTGGCGGTGGTGACGGTGATGGCGGTGCA
GCAGATGCGGTGGGCGCGGCCGAGGTGATCGATCTGACATAA
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