Ggra8789.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8789.t1
Unique Name	Ggra8789.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	473

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:122849..124267 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	588596.U9SRZ3
PFAMs	Pkinase
Max annot lvl	4751\|Fungi
Evalue	4.84e-99
EggNOG OGs	KOG0201@1\|root,KOG0201@2759\|Eukaryota,38G1B@33154\|Opisthokonta,3NV84@4751\|Fungi
Description	Ste ste20 ysk protein kinase
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8789	Ggra8789	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 122849..124267 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8789.t1.start1	Ggra8789.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 122849..122851 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8789.t1.CDS1	Ggra8789.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 122849..124267 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8789.t1.exon1	Ggra8789.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 122849..124267 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8789.t1.stop1	Ggra8789.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 124265..124267 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8789.t1	Ggra8789.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 122849..124267 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:122849..124267+
coding sequence from alignment at tig00000860_pilon:122849..124267+

mRNA sequence

>Ggra8789.t1 ID=Ggra8789.t1|Name=Ggra8789.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=473bp
MADMYEKLECIGKGSFGEVFKGREISTGKIVALKLVDLEKMDEEIDIIQR
EIEVMRQISNPYVVQYYTSVMEGSTLWIVMEYMSAGSLKELIDKVGPLPE
DAIATVMKALCRGLDYVHRGSKLHRDIKAANILLNDNAEVKLADFGVAGQ
MTTTIRQRNTFVGSPFWMAPEVVQKSLYDEKADIWSIGITGLELANGLPP
YATEHPFRALFLIPKNPPPRVEGSHFSDSFKEFIALCLKKNPIERSSAEQ
LLHHSFLRKARSRSIKELIRQRQQMSGEGEGTVVIGGDSITEFPDSTLEN
SLRGEDEGNAGEKKWDFDFGSLTETKPDGESNTDATEPKEEQRKSPAKEE
HGQSADDQRSPRATRASESNPGETAEVPTTSNQASQSEILSELILPVISC
IRADEVTGGNRNSLLTASLGALEVAFVDVESARPGFSRVLLESLFTETLQ
SNLPEANSLVKHVLQKSRANGT*

spliced messenger RNA

>Ggra8789.t1 ID=Ggra8789.t1|Name=Ggra8789.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1419bp|location=Sequence derived from alignment at tig00000860_pilon:122849..124267+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGATATGTACGAGAAACTGGAATGCATCGGCAAGGGCTCCTTTGG
AGAGGTGTTCAAGGGCCGAGAGATATCAACTGGTAAGATCGTCGCTCTCA
AGCTCGTCGACTTGGAAAAGATGGACGAGGAGATAGACATTATCCAACGC
GAGATCGAAGTTATGCGTCAAATATCAAACCCATACGTTGTGCAATACTA
TACCTCTGTCATGGAAGGTTCCACTCTATGGATTGTCATGGAGTACATGT
CGGCGGGCTCTTTGAAGGAGCTCATAGACAAAGTTGGTCCTCTGCCGGAG
GACGCAATCGCCACTGTTATGAAAGCACTTTGTCGAGGCCTTGATTATGT
CCACAGAGGAAGCAAGCTTCATCGTGATATCAAAGCGGCTAATATTTTGC
TCAATGACAATGCAGAGGTTAAGCTTGCTGATTTTGGCGTCGCGGGGCAG
ATGACAACTACAATTCGCCAGCGCAATACCTTCGTTGGCTCTCCATTTTG
GATGGCACCCGAAGTTGTACAAAAGAGTCTTTACGATGAAAAAGCAGATA
TATGGTCTATTGGTATTACAGGCCTAGAGTTAGCAAATGGCTTACCACCA
TATGCCACGGAGCATCCATTTCGCGCTTTGTTCCTTATTCCGAAGAACCC
TCCTCCTCGCGTTGAAGGTAGTCACTTCTCAGACTCTTTCAAGGAATTCA
TAGCCCTTTGTTTGAAGAAGAATCCCATCGAACGATCAAGCGCTGAACAG
CTATTGCACCATTCGTTTTTGCGAAAGGCCCGTTCTAGGTCCATCAAGGA
GCTCATCCGGCAACGACAGCAAATGTCTGGTGAAGGGGAAGGAACGGTGG
TCATTGGGGGAGATTCCATCACCGAGTTTCCGGACTCAACCCTGGAGAAC
TCTCTGAGAGGAGAGGATGAGGGCAATGCAGGGGAGAAGAAATGGGACTT
TGACTTTGGGTCGCTGACGGAGACCAAACCCGATGGCGAATCAAATACTG
ACGCGACTGAACCCAAGGAGGAACAACGAAAGAGCCCTGCGAAAGAAGAA
CATGGACAGTCTGCGGATGATCAAAGGAGTCCTAGGGCTACTCGTGCATC
AGAAAGCAACCCAGGTGAAACGGCGGAAGTACCAACCACATCAAATCAAG
CCTCCCAGAGTGAGATTCTGTCAGAGCTTATACTCCCTGTTATATCCTGC
ATCAGAGCAGACGAGGTGACTGGTGGCAATCGCAATAGTCTATTGACAGC
AAGTCTTGGGGCTCTGGAGGTCGCTTTCGTTGATGTCGAAAGTGCGCGTC
CCGGGTTCTCACGTGTGCTTTTGGAATCTTTGTTCACGGAGACTCTGCAA
TCGAATTTACCAGAGGCCAACTCGCTTGTGAAGCATGTGCTTCAAAAGTC
GAGAGCGAACGGAACATGA

protein sequence of Ggra8789.t1

>Ggra8789.t1 ID=Ggra8789.t1|Name=Ggra8789.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=473bp
MADMYEKLECIGKGSFGEVFKGREISTGKIVALKLVDLEKMDEEIDIIQR
EIEVMRQISNPYVVQYYTSVMEGSTLWIVMEYMSAGSLKELIDKVGPLPE
DAIATVMKALCRGLDYVHRGSKLHRDIKAANILLNDNAEVKLADFGVAGQ
MTTTIRQRNTFVGSPFWMAPEVVQKSLYDEKADIWSIGITGLELANGLPP
YATEHPFRALFLIPKNPPPRVEGSHFSDSFKEFIALCLKKNPIERSSAEQ
LLHHSFLRKARSRSIKELIRQRQQMSGEGEGTVVIGGDSITEFPDSTLEN
SLRGEDEGNAGEKKWDFDFGSLTETKPDGESNTDATEPKEEQRKSPAKEE
HGQSADDQRSPRATRASESNPGETAEVPTTSNQASQSEILSELILPVISC
IRADEVTGGNRNSLLTASLGALEVAFVDVESARPGFSRVLLESLFTETLQ
SNLPEANSLVKHVLQKSRANGT*

mRNA from alignment at tig00000860_pilon:122849..124267+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8789.t1 ID=Ggra8789.t1|Name=Ggra8789.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1419bp|location=Sequence derived from alignment at tig00000860_pilon:122849..124267+ (Gracilaria gracilis GNS1m male)
ATGGCTGATATGTACGAGAAACTGGAATGCATCGGCAAGGGCTCCTTTGG
AGAGGTGTTCAAGGGCCGAGAGATATCAACTGGTAAGATCGTCGCTCTCA
AGCTCGTCGACTTGGAAAAGATGGACGAGGAGATAGACATTATCCAACGC
GAGATCGAAGTTATGCGTCAAATATCAAACCCATACGTTGTGCAATACTA
TACCTCTGTCATGGAAGGTTCCACTCTATGGATTGTCATGGAGTACATGT
CGGCGGGCTCTTTGAAGGAGCTCATAGACAAAGTTGGTCCTCTGCCGGAG
GACGCAATCGCCACTGTTATGAAAGCACTTTGTCGAGGCCTTGATTATGT
CCACAGAGGAAGCAAGCTTCATCGTGATATCAAAGCGGCTAATATTTTGC
TCAATGACAATGCAGAGGTTAAGCTTGCTGATTTTGGCGTCGCGGGGCAG
ATGACAACTACAATTCGCCAGCGCAATACCTTCGTTGGCTCTCCATTTTG
GATGGCACCCGAAGTTGTACAAAAGAGTCTTTACGATGAAAAAGCAGATA
TATGGTCTATTGGTATTACAGGCCTAGAGTTAGCAAATGGCTTACCACCA
TATGCCACGGAGCATCCATTTCGCGCTTTGTTCCTTATTCCGAAGAACCC
TCCTCCTCGCGTTGAAGGTAGTCACTTCTCAGACTCTTTCAAGGAATTCA
TAGCCCTTTGTTTGAAGAAGAATCCCATCGAACGATCAAGCGCTGAACAG
CTATTGCACCATTCGTTTTTGCGAAAGGCCCGTTCTAGGTCCATCAAGGA
GCTCATCCGGCAACGACAGCAAATGTCTGGTGAAGGGGAAGGAACGGTGG
TCATTGGGGGAGATTCCATCACCGAGTTTCCGGACTCAACCCTGGAGAAC
TCTCTGAGAGGAGAGGATGAGGGCAATGCAGGGGAGAAGAAATGGGACTT
TGACTTTGGGTCGCTGACGGAGACCAAACCCGATGGCGAATCAAATACTG
ACGCGACTGAACCCAAGGAGGAACAACGAAAGAGCCCTGCGAAAGAAGAA
CATGGACAGTCTGCGGATGATCAAAGGAGTCCTAGGGCTACTCGTGCATC
AGAAAGCAACCCAGGTGAAACGGCGGAAGTACCAACCACATCAAATCAAG
CCTCCCAGAGTGAGATTCTGTCAGAGCTTATACTCCCTGTTATATCCTGC
ATCAGAGCAGACGAGGTGACTGGTGGCAATCGCAATAGTCTATTGACAGC
AAGTCTTGGGGCTCTGGAGGTCGCTTTCGTTGATGTCGAAAGTGCGCGTC
CCGGGTTCTCACGTGTGCTTTTGGAATCTTTGTTCACGGAGACTCTGCAA
TCGAATTTACCAGAGGCCAACTCGCTTGTGAAGCATGTGCTTCAAAAGTC
GAGAGCGAACGGAACATGA

Coding sequence (CDS) from alignment at tig00000860_pilon:122849..124267+

>Ggra8789.t1 ID=Ggra8789.t1|Name=Ggra8789.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1419bp|location=Sequence derived from alignment at tig00000860_pilon:122849..124267+ (Gracilaria gracilis GNS1m male)
ATGGCTGATATGTACGAGAAACTGGAATGCATCGGCAAGGGCTCCTTTGG
AGAGGTGTTCAAGGGCCGAGAGATATCAACTGGTAAGATCGTCGCTCTCA
AGCTCGTCGACTTGGAAAAGATGGACGAGGAGATAGACATTATCCAACGC
GAGATCGAAGTTATGCGTCAAATATCAAACCCATACGTTGTGCAATACTA
TACCTCTGTCATGGAAGGTTCCACTCTATGGATTGTCATGGAGTACATGT
CGGCGGGCTCTTTGAAGGAGCTCATAGACAAAGTTGGTCCTCTGCCGGAG
GACGCAATCGCCACTGTTATGAAAGCACTTTGTCGAGGCCTTGATTATGT
CCACAGAGGAAGCAAGCTTCATCGTGATATCAAAGCGGCTAATATTTTGC
TCAATGACAATGCAGAGGTTAAGCTTGCTGATTTTGGCGTCGCGGGGCAG
ATGACAACTACAATTCGCCAGCGCAATACCTTCGTTGGCTCTCCATTTTG
GATGGCACCCGAAGTTGTACAAAAGAGTCTTTACGATGAAAAAGCAGATA
TATGGTCTATTGGTATTACAGGCCTAGAGTTAGCAAATGGCTTACCACCA
TATGCCACGGAGCATCCATTTCGCGCTTTGTTCCTTATTCCGAAGAACCC
TCCTCCTCGCGTTGAAGGTAGTCACTTCTCAGACTCTTTCAAGGAATTCA
TAGCCCTTTGTTTGAAGAAGAATCCCATCGAACGATCAAGCGCTGAACAG
CTATTGCACCATTCGTTTTTGCGAAAGGCCCGTTCTAGGTCCATCAAGGA
GCTCATCCGGCAACGACAGCAAATGTCTGGTGAAGGGGAAGGAACGGTGG
TCATTGGGGGAGATTCCATCACCGAGTTTCCGGACTCAACCCTGGAGAAC
TCTCTGAGAGGAGAGGATGAGGGCAATGCAGGGGAGAAGAAATGGGACTT
TGACTTTGGGTCGCTGACGGAGACCAAACCCGATGGCGAATCAAATACTG
ACGCGACTGAACCCAAGGAGGAACAACGAAAGAGCCCTGCGAAAGAAGAA
CATGGACAGTCTGCGGATGATCAAAGGAGTCCTAGGGCTACTCGTGCATC
AGAAAGCAACCCAGGTGAAACGGCGGAAGTACCAACCACATCAAATCAAG
CCTCCCAGAGTGAGATTCTGTCAGAGCTTATACTCCCTGTTATATCCTGC
ATCAGAGCAGACGAGGTGACTGGTGGCAATCGCAATAGTCTATTGACAGC
AAGTCTTGGGGCTCTGGAGGTCGCTTTCGTTGATGTCGAAAGTGCGCGTC
CCGGGTTCTCACGTGTGCTTTTGGAATCTTTGTTCACGGAGACTCTGCAA
TCGAATTTACCAGAGGCCAACTCGCTTGTGAAGCATGTGCTTCAAAAGTC
GAGAGCGAACGGAACATGA