Ggra8787.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8787.t1
Unique NameGgra8787.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length361
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:118051..119133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog242159.ABO95885
PFAMsTPR_16
Max annot lvl3041|Chlorophyta
Evalue6.13e-17
EggNOG OGs2CV6Q@1|root,2RREP@2759|Eukaryota,380E2@33090|Viridiplantae,34MI7@3041|Chlorophyta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8787Ggra8787Gracilaria gracilis GNS1m malegenetig00000860_pilon 118051..119133 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8787.t1.start1Ggra8787.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 118051..118053 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8787.t1.CDS1Ggra8787.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 118051..119133 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8787.t1.exon1Ggra8787.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 118051..119133 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8787.t1.stop1Ggra8787.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 119131..119133 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8787.t1Ggra8787.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 118051..119133 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8787.t1 ID=Ggra8787.t1|Name=Ggra8787.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=361bp
MSPVPRKTRHSRRSTSKSSRRVKHKASKRPSPASVDELLRDAKTCEATGR
MQEAVSKMENAVSLKSDDAGLYEDLASLYMQVTRPDDALRALRIAIKLKP
NEGFEKYAYLAQLLGNTEEAILSARKGIELIKMEIMNIDKSQEVRVQELR
EFQASAHCAIAEICLGIIEESNDHALAKKLDVEVEKEIMEALTISIEGSV
SEQESLIALANLRLSQGRAIDAKQAMERVLRSMSYGLKLLEQDNLSDAVV
ISAMEKLPPMEIRIAVGKQLMEVGLWLEAEAVLSSIMYECDFNVEVWYLL
AVTHWKRKQLSEARECLKQTRAILQRPDGYDGELEEEMIDKLYEELEKIS
NDPSEGAPLQ*
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spliced messenger RNA

>Ggra8787.t1 ID=Ggra8787.t1|Name=Ggra8787.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1083bp|location=Sequence derived from alignment at tig00000860_pilon:118051..119133+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCCCAGTCCCAAGAAAGACACGTCATTCGAGGCGTTCTACTTCTAA
ATCTTCCAGAAGAGTGAAGCACAAAGCATCGAAGCGTCCCAGCCCAGCAT
CTGTCGATGAGCTTCTAAGGGATGCAAAAACATGTGAAGCAACAGGGCGA
ATGCAGGAGGCCGTTTCCAAGATGGAGAACGCAGTTTCATTGAAGTCGGA
TGATGCAGGACTTTACGAGGATTTGGCCTCTCTTTACATGCAAGTAACGA
GACCGGATGATGCATTACGGGCCTTGCGCATTGCGATTAAGCTCAAACCG
AATGAAGGATTCGAGAAATATGCCTATCTAGCACAACTTCTTGGCAACAC
GGAGGAAGCCATCTTGAGCGCTCGTAAAGGGATCGAATTGATAAAGATGG
AGATCATGAACATTGACAAATCGCAGGAGGTTCGCGTGCAAGAGTTGCGA
GAATTTCAAGCGAGTGCGCATTGTGCTATTGCTGAAATATGTCTCGGAAT
CATCGAAGAGAGTAATGACCATGCTTTGGCTAAGAAACTAGACGTCGAAG
TGGAGAAAGAGATTATGGAAGCTCTGACTATAAGTATCGAGGGAAGTGTA
TCTGAACAAGAGTCATTGATAGCTTTGGCAAACCTGCGATTAAGTCAAGG
TAGGGCAATAGATGCGAAACAGGCCATGGAACGCGTTTTACGTAGTATGT
CATACGGACTTAAACTGCTCGAGCAGGATAACTTATCCGATGCAGTAGTA
ATCTCAGCTATGGAGAAACTGCCACCAATGGAGATTCGAATAGCTGTTGG
GAAACAGCTTATGGAAGTTGGCTTATGGCTTGAAGCCGAGGCCGTTCTTT
CTTCAATCATGTACGAGTGTGACTTCAATGTTGAAGTTTGGTACCTACTC
GCAGTAACGCATTGGAAACGAAAACAGCTTTCGGAAGCCCGAGAATGCTT
AAAGCAGACGCGTGCGATTCTACAACGACCAGACGGATACGACGGAGAAC
TCGAAGAAGAGATGATTGACAAACTATACGAGGAGTTAGAAAAGATTAGT
AATGATCCCAGTGAAGGTGCTCCACTGCAGTGA
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protein sequence of Ggra8787.t1

>Ggra8787.t1 ID=Ggra8787.t1|Name=Ggra8787.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=361bp
MSPVPRKTRHSRRSTSKSSRRVKHKASKRPSPASVDELLRDAKTCEATGR
MQEAVSKMENAVSLKSDDAGLYEDLASLYMQVTRPDDALRALRIAIKLKP
NEGFEKYAYLAQLLGNTEEAILSARKGIELIKMEIMNIDKSQEVRVQELR
EFQASAHCAIAEICLGIIEESNDHALAKKLDVEVEKEIMEALTISIEGSV
SEQESLIALANLRLSQGRAIDAKQAMERVLRSMSYGLKLLEQDNLSDAVV
ISAMEKLPPMEIRIAVGKQLMEVGLWLEAEAVLSSIMYECDFNVEVWYLL
AVTHWKRKQLSEARECLKQTRAILQRPDGYDGELEEEMIDKLYEELEKIS
NDPSEGAPLQ*
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mRNA from alignment at tig00000860_pilon:118051..119133+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8787.t1 ID=Ggra8787.t1|Name=Ggra8787.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1083bp|location=Sequence derived from alignment at tig00000860_pilon:118051..119133+ (Gracilaria gracilis GNS1m male)
ATGTCCCCAGTCCCAAGAAAGACACGTCATTCGAGGCGTTCTACTTCTAA
ATCTTCCAGAAGAGTGAAGCACAAAGCATCGAAGCGTCCCAGCCCAGCAT
CTGTCGATGAGCTTCTAAGGGATGCAAAAACATGTGAAGCAACAGGGCGA
ATGCAGGAGGCCGTTTCCAAGATGGAGAACGCAGTTTCATTGAAGTCGGA
TGATGCAGGACTTTACGAGGATTTGGCCTCTCTTTACATGCAAGTAACGA
GACCGGATGATGCATTACGGGCCTTGCGCATTGCGATTAAGCTCAAACCG
AATGAAGGATTCGAGAAATATGCCTATCTAGCACAACTTCTTGGCAACAC
GGAGGAAGCCATCTTGAGCGCTCGTAAAGGGATCGAATTGATAAAGATGG
AGATCATGAACATTGACAAATCGCAGGAGGTTCGCGTGCAAGAGTTGCGA
GAATTTCAAGCGAGTGCGCATTGTGCTATTGCTGAAATATGTCTCGGAAT
CATCGAAGAGAGTAATGACCATGCTTTGGCTAAGAAACTAGACGTCGAAG
TGGAGAAAGAGATTATGGAAGCTCTGACTATAAGTATCGAGGGAAGTGTA
TCTGAACAAGAGTCATTGATAGCTTTGGCAAACCTGCGATTAAGTCAAGG
TAGGGCAATAGATGCGAAACAGGCCATGGAACGCGTTTTACGTAGTATGT
CATACGGACTTAAACTGCTCGAGCAGGATAACTTATCCGATGCAGTAGTA
ATCTCAGCTATGGAGAAACTGCCACCAATGGAGATTCGAATAGCTGTTGG
GAAACAGCTTATGGAAGTTGGCTTATGGCTTGAAGCCGAGGCCGTTCTTT
CTTCAATCATGTACGAGTGTGACTTCAATGTTGAAGTTTGGTACCTACTC
GCAGTAACGCATTGGAAACGAAAACAGCTTTCGGAAGCCCGAGAATGCTT
AAAGCAGACGCGTGCGATTCTACAACGACCAGACGGATACGACGGAGAAC
TCGAAGAAGAGATGATTGACAAACTATACGAGGAGTTAGAAAAGATTAGT
AATGATCCCAGTGAAGGTGCTCCACTGCAGTGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:118051..119133+

>Ggra8787.t1 ID=Ggra8787.t1|Name=Ggra8787.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1083bp|location=Sequence derived from alignment at tig00000860_pilon:118051..119133+ (Gracilaria gracilis GNS1m male)
ATGTCCCCAGTCCCAAGAAAGACACGTCATTCGAGGCGTTCTACTTCTAA
ATCTTCCAGAAGAGTGAAGCACAAAGCATCGAAGCGTCCCAGCCCAGCAT
CTGTCGATGAGCTTCTAAGGGATGCAAAAACATGTGAAGCAACAGGGCGA
ATGCAGGAGGCCGTTTCCAAGATGGAGAACGCAGTTTCATTGAAGTCGGA
TGATGCAGGACTTTACGAGGATTTGGCCTCTCTTTACATGCAAGTAACGA
GACCGGATGATGCATTACGGGCCTTGCGCATTGCGATTAAGCTCAAACCG
AATGAAGGATTCGAGAAATATGCCTATCTAGCACAACTTCTTGGCAACAC
GGAGGAAGCCATCTTGAGCGCTCGTAAAGGGATCGAATTGATAAAGATGG
AGATCATGAACATTGACAAATCGCAGGAGGTTCGCGTGCAAGAGTTGCGA
GAATTTCAAGCGAGTGCGCATTGTGCTATTGCTGAAATATGTCTCGGAAT
CATCGAAGAGAGTAATGACCATGCTTTGGCTAAGAAACTAGACGTCGAAG
TGGAGAAAGAGATTATGGAAGCTCTGACTATAAGTATCGAGGGAAGTGTA
TCTGAACAAGAGTCATTGATAGCTTTGGCAAACCTGCGATTAAGTCAAGG
TAGGGCAATAGATGCGAAACAGGCCATGGAACGCGTTTTACGTAGTATGT
CATACGGACTTAAACTGCTCGAGCAGGATAACTTATCCGATGCAGTAGTA
ATCTCAGCTATGGAGAAACTGCCACCAATGGAGATTCGAATAGCTGTTGG
GAAACAGCTTATGGAAGTTGGCTTATGGCTTGAAGCCGAGGCCGTTCTTT
CTTCAATCATGTACGAGTGTGACTTCAATGTTGAAGTTTGGTACCTACTC
GCAGTAACGCATTGGAAACGAAAACAGCTTTCGGAAGCCCGAGAATGCTT
AAAGCAGACGCGTGCGATTCTACAACGACCAGACGGATACGACGGAGAAC
TCGAAGAAGAGATGATTGACAAACTATACGAGGAGTTAGAAAAGATTAGT
AATGATCCCAGTGAAGGTGCTCCACTGCAGTGA
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