Ggra8786.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8786.t1
Unique NameGgra8786.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length506
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:115956..117473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX54435
Preferred namePYROXD1
PFAMsPyr_redox_2
Max annot lvl2759|Eukaryota
KEGG koko:K16174
KEGG Pathwayko05203,map05203
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006950,GO:0006979,GO:0008150,GO:0009987,GO:0030016,GO:0030017,GO:0033554,GO:0034599,GO:0042221,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043292,GO:0044422,GO:0044424,GO:0044444,GO:0044449,GO:0044464,GO:0050896,GO:0051716,GO:0070887,GO:0099080,GO:0099081,GO:0099512
Evalue3.6e-77
EggNOG OGsCOG0446@1|root,KOG2755@2759|Eukaryota
DescriptionPyridine nucleotide-disulfide oxidoreductase domain-containing protein
COG categoryL
BRITEko00000,ko00001,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8786Ggra8786Gracilaria gracilis GNS1m malegenetig00000860_pilon 115956..117473 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8786.t1.stop1Ggra8786.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 115956..115958 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8786.t1.CDS1Ggra8786.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 115956..117473 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8786.t1.exon1Ggra8786.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 115956..117473 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8786.t1.start1Ggra8786.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 117471..117473 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8786.t1Ggra8786.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 115956..117473 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8786.t1 ID=Ggra8786.t1|Name=Ggra8786.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=506bp
MQSGMPAVVIGGGIAGTTCALHLSSLVPELPIVLVEAQSTLRISSNPIAV
TPLATDVSLKTKQSREWCAKRNFTFVQARAVKLEPGLIRTENGLCQPYSV
CCIATGASPFIPLPLQVAEFQNVILTLRDTHSVQRLAEGLLGSRTVLVIG
AGGIAMELVHEISDCHVLWLTRNHIGSAFFDERAASALSDVFNVEESSRI
DHVQKLDPLDIARKTVKDRLSNAEDVNMESNSTGYATAAAVGPQWLRRRE
SPILYDKAGVVHKAENPIHFLHGRNEKKLHILEGCEVVQLHKDRKGEWPV
IAQLSNGDFVGCDLIIVATGVSANVDWLKDAPIELAPREEGRDGGVVVRA
GVMASSMSRVFAAGDCASVRQDDDSDWFQMRLWSQALTAGRVAAQNMAAR
LGFGEAYEGLEFDVFAHATKFFGKRVVLLGRHNAQGLGTGYKEYEKYGEE
YLRVVVKDGRVRGAILVGDVDGAEVFENLILTQLNIDWLGERIVDKETDL
EEYFD*
back to top

spliced messenger RNA

>Ggra8786.t1 ID=Ggra8786.t1|Name=Ggra8786.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1518bp|location=Sequence derived from alignment at tig00000860_pilon:115956..117473- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGAGTGGAATGCCCGCGGTTGTGATCGGCGGTGGGATAGCAGGGAC
TACGTGTGCATTGCACTTGTCTTCCCTTGTACCAGAACTTCCCATAGTTC
TGGTTGAGGCCCAATCTACTTTGAGGATATCGTCTAATCCTATTGCAGTT
ACTCCCCTGGCCACTGATGTCTCTTTGAAAACTAAACAATCCCGCGAATG
GTGTGCCAAACGAAACTTTACTTTTGTTCAGGCAAGGGCAGTTAAGTTGG
AGCCTGGGCTTATAAGAACGGAGAATGGCTTATGTCAACCATATTCTGTA
TGTTGTATTGCAACTGGTGCTTCTCCTTTTATCCCACTCCCACTTCAGGT
TGCCGAGTTCCAGAATGTTATTCTCACATTGCGAGATACTCATTCAGTAC
AGCGGCTTGCTGAAGGTCTATTAGGATCTCGCACTGTCTTGGTTATTGGT
GCTGGGGGTATCGCTATGGAGCTTGTTCACGAGATATCAGATTGCCATGT
TCTTTGGTTGACTCGAAATCATATTGGCAGTGCATTCTTCGACGAACGTG
CAGCCAGCGCTCTTTCGGACGTTTTCAATGTAGAAGAGTCCTCTCGTATT
GACCATGTTCAGAAACTGGATCCATTGGATATTGCCCGTAAGACTGTCAA
GGATAGGCTGTCAAACGCTGAAGATGTCAATATGGAAAGCAACTCGACAG
GCTATGCGACAGCGGCGGCTGTTGGACCGCAATGGCTACGACGACGAGAA
AGTCCGATTCTCTACGACAAAGCGGGTGTTGTGCACAAGGCTGAGAATCC
AATCCATTTCCTTCATGGTAGGAATGAGAAGAAACTGCACATTCTCGAAG
GCTGCGAGGTGGTGCAATTACATAAAGATAGAAAAGGAGAATGGCCAGTC
ATTGCACAGCTATCGAATGGAGACTTTGTTGGCTGCGATCTTATCATCGT
CGCTACCGGCGTTTCGGCCAACGTTGACTGGTTAAAAGATGCCCCTATTG
AATTAGCACCTCGTGAAGAAGGCAGGGATGGAGGAGTGGTTGTCAGAGCC
GGAGTGATGGCAAGTAGTATGTCTCGTGTTTTCGCAGCTGGAGATTGCGC
GTCTGTGCGTCAAGACGACGATTCAGACTGGTTTCAGATGCGTCTATGGA
GCCAAGCATTGACCGCTGGGCGTGTGGCAGCACAAAACATGGCGGCAAGA
CTAGGTTTTGGTGAAGCATACGAGGGTCTCGAGTTTGACGTGTTTGCACA
TGCGACGAAGTTCTTCGGGAAGCGAGTAGTGCTGCTAGGTCGTCATAATG
CTCAAGGGCTTGGAACTGGGTACAAGGAATATGAGAAATATGGAGAAGAG
TATTTAAGAGTTGTAGTGAAAGACGGTAGAGTGAGGGGAGCAATCCTTGT
GGGTGATGTCGATGGTGCAGAAGTGTTCGAGAACTTGATTTTGACACAGC
TAAATATCGACTGGCTTGGTGAACGCATAGTAGACAAGGAAACGGACTTG
GAAGAGTACTTTGACTGA
back to top

protein sequence of Ggra8786.t1

>Ggra8786.t1 ID=Ggra8786.t1|Name=Ggra8786.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=506bp
MQSGMPAVVIGGGIAGTTCALHLSSLVPELPIVLVEAQSTLRISSNPIAV
TPLATDVSLKTKQSREWCAKRNFTFVQARAVKLEPGLIRTENGLCQPYSV
CCIATGASPFIPLPLQVAEFQNVILTLRDTHSVQRLAEGLLGSRTVLVIG
AGGIAMELVHEISDCHVLWLTRNHIGSAFFDERAASALSDVFNVEESSRI
DHVQKLDPLDIARKTVKDRLSNAEDVNMESNSTGYATAAAVGPQWLRRRE
SPILYDKAGVVHKAENPIHFLHGRNEKKLHILEGCEVVQLHKDRKGEWPV
IAQLSNGDFVGCDLIIVATGVSANVDWLKDAPIELAPREEGRDGGVVVRA
GVMASSMSRVFAAGDCASVRQDDDSDWFQMRLWSQALTAGRVAAQNMAAR
LGFGEAYEGLEFDVFAHATKFFGKRVVLLGRHNAQGLGTGYKEYEKYGEE
YLRVVVKDGRVRGAILVGDVDGAEVFENLILTQLNIDWLGERIVDKETDL
EEYFD*
back to top

mRNA from alignment at tig00000860_pilon:115956..117473-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8786.t1 ID=Ggra8786.t1|Name=Ggra8786.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1518bp|location=Sequence derived from alignment at tig00000860_pilon:115956..117473- (Gracilaria gracilis GNS1m male)
ATGCAGAGTGGAATGCCCGCGGTTGTGATCGGCGGTGGGATAGCAGGGAC
TACGTGTGCATTGCACTTGTCTTCCCTTGTACCAGAACTTCCCATAGTTC
TGGTTGAGGCCCAATCTACTTTGAGGATATCGTCTAATCCTATTGCAGTT
ACTCCCCTGGCCACTGATGTCTCTTTGAAAACTAAACAATCCCGCGAATG
GTGTGCCAAACGAAACTTTACTTTTGTTCAGGCAAGGGCAGTTAAGTTGG
AGCCTGGGCTTATAAGAACGGAGAATGGCTTATGTCAACCATATTCTGTA
TGTTGTATTGCAACTGGTGCTTCTCCTTTTATCCCACTCCCACTTCAGGT
TGCCGAGTTCCAGAATGTTATTCTCACATTGCGAGATACTCATTCAGTAC
AGCGGCTTGCTGAAGGTCTATTAGGATCTCGCACTGTCTTGGTTATTGGT
GCTGGGGGTATCGCTATGGAGCTTGTTCACGAGATATCAGATTGCCATGT
TCTTTGGTTGACTCGAAATCATATTGGCAGTGCATTCTTCGACGAACGTG
CAGCCAGCGCTCTTTCGGACGTTTTCAATGTAGAAGAGTCCTCTCGTATT
GACCATGTTCAGAAACTGGATCCATTGGATATTGCCCGTAAGACTGTCAA
GGATAGGCTGTCAAACGCTGAAGATGTCAATATGGAAAGCAACTCGACAG
GCTATGCGACAGCGGCGGCTGTTGGACCGCAATGGCTACGACGACGAGAA
AGTCCGATTCTCTACGACAAAGCGGGTGTTGTGCACAAGGCTGAGAATCC
AATCCATTTCCTTCATGGTAGGAATGAGAAGAAACTGCACATTCTCGAAG
GCTGCGAGGTGGTGCAATTACATAAAGATAGAAAAGGAGAATGGCCAGTC
ATTGCACAGCTATCGAATGGAGACTTTGTTGGCTGCGATCTTATCATCGT
CGCTACCGGCGTTTCGGCCAACGTTGACTGGTTAAAAGATGCCCCTATTG
AATTAGCACCTCGTGAAGAAGGCAGGGATGGAGGAGTGGTTGTCAGAGCC
GGAGTGATGGCAAGTAGTATGTCTCGTGTTTTCGCAGCTGGAGATTGCGC
GTCTGTGCGTCAAGACGACGATTCAGACTGGTTTCAGATGCGTCTATGGA
GCCAAGCATTGACCGCTGGGCGTGTGGCAGCACAAAACATGGCGGCAAGA
CTAGGTTTTGGTGAAGCATACGAGGGTCTCGAGTTTGACGTGTTTGCACA
TGCGACGAAGTTCTTCGGGAAGCGAGTAGTGCTGCTAGGTCGTCATAATG
CTCAAGGGCTTGGAACTGGGTACAAGGAATATGAGAAATATGGAGAAGAG
TATTTAAGAGTTGTAGTGAAAGACGGTAGAGTGAGGGGAGCAATCCTTGT
GGGTGATGTCGATGGTGCAGAAGTGTTCGAGAACTTGATTTTGACACAGC
TAAATATCGACTGGCTTGGTGAACGCATAGTAGACAAGGAAACGGACTTG
GAAGAGTACTTTGACTGA
back to top

Coding sequence (CDS) from alignment at tig00000860_pilon:115956..117473-

>Ggra8786.t1 ID=Ggra8786.t1|Name=Ggra8786.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1518bp|location=Sequence derived from alignment at tig00000860_pilon:115956..117473- (Gracilaria gracilis GNS1m male)
ATGCAGAGTGGAATGCCCGCGGTTGTGATCGGCGGTGGGATAGCAGGGAC
TACGTGTGCATTGCACTTGTCTTCCCTTGTACCAGAACTTCCCATAGTTC
TGGTTGAGGCCCAATCTACTTTGAGGATATCGTCTAATCCTATTGCAGTT
ACTCCCCTGGCCACTGATGTCTCTTTGAAAACTAAACAATCCCGCGAATG
GTGTGCCAAACGAAACTTTACTTTTGTTCAGGCAAGGGCAGTTAAGTTGG
AGCCTGGGCTTATAAGAACGGAGAATGGCTTATGTCAACCATATTCTGTA
TGTTGTATTGCAACTGGTGCTTCTCCTTTTATCCCACTCCCACTTCAGGT
TGCCGAGTTCCAGAATGTTATTCTCACATTGCGAGATACTCATTCAGTAC
AGCGGCTTGCTGAAGGTCTATTAGGATCTCGCACTGTCTTGGTTATTGGT
GCTGGGGGTATCGCTATGGAGCTTGTTCACGAGATATCAGATTGCCATGT
TCTTTGGTTGACTCGAAATCATATTGGCAGTGCATTCTTCGACGAACGTG
CAGCCAGCGCTCTTTCGGACGTTTTCAATGTAGAAGAGTCCTCTCGTATT
GACCATGTTCAGAAACTGGATCCATTGGATATTGCCCGTAAGACTGTCAA
GGATAGGCTGTCAAACGCTGAAGATGTCAATATGGAAAGCAACTCGACAG
GCTATGCGACAGCGGCGGCTGTTGGACCGCAATGGCTACGACGACGAGAA
AGTCCGATTCTCTACGACAAAGCGGGTGTTGTGCACAAGGCTGAGAATCC
AATCCATTTCCTTCATGGTAGGAATGAGAAGAAACTGCACATTCTCGAAG
GCTGCGAGGTGGTGCAATTACATAAAGATAGAAAAGGAGAATGGCCAGTC
ATTGCACAGCTATCGAATGGAGACTTTGTTGGCTGCGATCTTATCATCGT
CGCTACCGGCGTTTCGGCCAACGTTGACTGGTTAAAAGATGCCCCTATTG
AATTAGCACCTCGTGAAGAAGGCAGGGATGGAGGAGTGGTTGTCAGAGCC
GGAGTGATGGCAAGTAGTATGTCTCGTGTTTTCGCAGCTGGAGATTGCGC
GTCTGTGCGTCAAGACGACGATTCAGACTGGTTTCAGATGCGTCTATGGA
GCCAAGCATTGACCGCTGGGCGTGTGGCAGCACAAAACATGGCGGCAAGA
CTAGGTTTTGGTGAAGCATACGAGGGTCTCGAGTTTGACGTGTTTGCACA
TGCGACGAAGTTCTTCGGGAAGCGAGTAGTGCTGCTAGGTCGTCATAATG
CTCAAGGGCTTGGAACTGGGTACAAGGAATATGAGAAATATGGAGAAGAG
TATTTAAGAGTTGTAGTGAAAGACGGTAGAGTGAGGGGAGCAATCCTTGT
GGGTGATGTCGATGGTGCAGAAGTGTTCGAGAACTTGATTTTGACACAGC
TAAATATCGACTGGCTTGGTGAACGCATAGTAGACAAGGAAACGGACTTG
GAAGAGTACTTTGACTGA
back to top