Ggra8784.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8784.t1
Unique Name	Ggra8784.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	486

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:112304..113761 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8784	Ggra8784	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 112304..113761 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8784.t1.start1	Ggra8784.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 112304..112306 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8784.t1.CDS1	Ggra8784.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 112304..113761 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8784.t1.exon1	Ggra8784.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 112304..113761 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8784.t1.stop1	Ggra8784.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 113759..113761 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8784.t1	Ggra8784.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 112304..113761 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:112304..113761+
coding sequence from alignment at tig00000860_pilon:112304..113761+

mRNA sequence

>Ggra8784.t1 ID=Ggra8784.t1|Name=Ggra8784.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=486bp
MVSNLYLEPNGSNETPWGISWAELFTSLRPNQEEITVIKSIISQVEDVLK
NAGLSHDLRPGGSFGKKTMTKGDSELHLYSFQQDFQPENYFESHLKPILE
ALKEEKRFAELKESGYAAVFNTNGIEVRVFAAGTLYGGPKDLLLPPKSSE
KQSARIMPDIARGHQLARDVHVETSCSLLRIQTIANQAPLYHDLVRVAKK
WRSTGDFMSRADTPGDYLIELLMLEAFTGAPCMPHGPELFGIVIRRFLSL
AATQSGTGSDVMADDSMPKSMLWWDRYFNRGVIDMCMAKGMLDVRRSDLC
SIIVVDPAVPFVNVARSVPDWTEMRRCARESLSSFQNTDLLDSLQDKVQA
LTEGMREVISGMQNQIETLQRLAKSPRRWSGDVQFNEAHMNSETWTTVME
VELHTIPWRVNARKAKTDGTGYMTSVDISLQMMGKKLEQTMDVDVSFRGG
TSNLVFDPSVAHVLICRRSEIVRNRDYPMQITVIG*

spliced messenger RNA

>Ggra8784.t1 ID=Ggra8784.t1|Name=Ggra8784.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1458bp|location=Sequence derived from alignment at tig00000860_pilon:112304..113761+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTCCAATCTATATCTAGAACCAAATGGGTCAAACGAAACACCTTG
GGGTATTAGCTGGGCGGAGCTCTTTACCTCACTCCGCCCAAACCAAGAAG
AGATTACGGTAATCAAATCTATCATTTCTCAAGTCGAAGATGTTCTCAAG
AACGCTGGTCTGTCTCATGATCTTCGGCCCGGAGGATCATTTGGGAAGAA
AACGATGACAAAAGGCGACAGTGAACTTCACCTTTACTCTTTTCAGCAAG
ATTTCCAGCCAGAGAACTACTTCGAATCACACCTCAAGCCCATCCTGGAA
GCTTTGAAAGAGGAAAAACGATTTGCGGAGCTAAAGGAGAGTGGCTACGC
AGCCGTCTTTAATACAAACGGAATTGAGGTGCGTGTATTCGCGGCTGGGA
CGTTGTACGGGGGGCCGAAAGATCTGCTGCTCCCTCCAAAGTCGAGCGAG
AAGCAATCTGCGCGCATAATGCCTGACATTGCACGGGGGCATCAGCTCGC
TCGTGATGTACATGTCGAAACTAGCTGTTCTCTTCTTCGCATACAGACTA
TTGCAAACCAGGCTCCTTTGTATCATGATCTTGTTCGCGTTGCAAAGAAG
TGGAGGTCGACTGGCGACTTCATGTCCAGAGCGGACACACCTGGAGACTA
TCTGATAGAATTACTGATGCTGGAAGCTTTCACTGGTGCTCCATGCATGC
CGCATGGGCCTGAGCTATTCGGTATTGTTATTCGTCGCTTCTTATCCCTG
GCGGCTACGCAATCTGGTACAGGGTCTGACGTCATGGCCGATGATAGCAT
GCCCAAATCCATGTTGTGGTGGGACAGATATTTTAATCGCGGAGTCATTG
ACATGTGCATGGCAAAAGGTATGTTGGATGTGCGACGTAGCGATCTATGC
TCTATAATTGTGGTTGATCCAGCTGTCCCCTTTGTTAATGTTGCACGGTC
TGTGCCAGACTGGACGGAGATGAGAAGATGTGCCAGAGAAAGCCTAAGTA
GCTTCCAGAACACTGACTTGCTAGATAGTCTGCAAGATAAGGTACAAGCA
TTGACAGAAGGCATGCGTGAAGTTATCAGTGGTATGCAGAACCAAATTGA
AACGCTACAACGGCTGGCTAAATCTCCAAGGCGGTGGTCTGGAGATGTGC
AGTTTAATGAGGCGCATATGAACAGCGAGACTTGGACAACAGTGATGGAG
GTTGAGCTGCACACAATCCCATGGCGAGTGAATGCTAGGAAAGCCAAAAC
GGACGGCACGGGGTATATGACGTCTGTTGATATCAGTTTACAAATGATGG
GAAAGAAACTTGAACAAACGATGGATGTTGATGTGTCGTTCAGAGGTGGG
ACGAGCAATCTGGTCTTCGACCCTAGTGTTGCCCATGTTTTGATTTGCAG
GCGCTCAGAGATTGTTAGGAATAGGGACTACCCAATGCAGATCACGGTTA
TTGGATGA

protein sequence of Ggra8784.t1

>Ggra8784.t1 ID=Ggra8784.t1|Name=Ggra8784.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=486bp
MVSNLYLEPNGSNETPWGISWAELFTSLRPNQEEITVIKSIISQVEDVLK
NAGLSHDLRPGGSFGKKTMTKGDSELHLYSFQQDFQPENYFESHLKPILE
ALKEEKRFAELKESGYAAVFNTNGIEVRVFAAGTLYGGPKDLLLPPKSSE
KQSARIMPDIARGHQLARDVHVETSCSLLRIQTIANQAPLYHDLVRVAKK
WRSTGDFMSRADTPGDYLIELLMLEAFTGAPCMPHGPELFGIVIRRFLSL
AATQSGTGSDVMADDSMPKSMLWWDRYFNRGVIDMCMAKGMLDVRRSDLC
SIIVVDPAVPFVNVARSVPDWTEMRRCARESLSSFQNTDLLDSLQDKVQA
LTEGMREVISGMQNQIETLQRLAKSPRRWSGDVQFNEAHMNSETWTTVME
VELHTIPWRVNARKAKTDGTGYMTSVDISLQMMGKKLEQTMDVDVSFRGG
TSNLVFDPSVAHVLICRRSEIVRNRDYPMQITVIG*

mRNA from alignment at tig00000860_pilon:112304..113761+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8784.t1 ID=Ggra8784.t1|Name=Ggra8784.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1458bp|location=Sequence derived from alignment at tig00000860_pilon:112304..113761+ (Gracilaria gracilis GNS1m male)
ATGGTGTCCAATCTATATCTAGAACCAAATGGGTCAAACGAAACACCTTG
GGGTATTAGCTGGGCGGAGCTCTTTACCTCACTCCGCCCAAACCAAGAAG
AGATTACGGTAATCAAATCTATCATTTCTCAAGTCGAAGATGTTCTCAAG
AACGCTGGTCTGTCTCATGATCTTCGGCCCGGAGGATCATTTGGGAAGAA
AACGATGACAAAAGGCGACAGTGAACTTCACCTTTACTCTTTTCAGCAAG
ATTTCCAGCCAGAGAACTACTTCGAATCACACCTCAAGCCCATCCTGGAA
GCTTTGAAAGAGGAAAAACGATTTGCGGAGCTAAAGGAGAGTGGCTACGC
AGCCGTCTTTAATACAAACGGAATTGAGGTGCGTGTATTCGCGGCTGGGA
CGTTGTACGGGGGGCCGAAAGATCTGCTGCTCCCTCCAAAGTCGAGCGAG
AAGCAATCTGCGCGCATAATGCCTGACATTGCACGGGGGCATCAGCTCGC
TCGTGATGTACATGTCGAAACTAGCTGTTCTCTTCTTCGCATACAGACTA
TTGCAAACCAGGCTCCTTTGTATCATGATCTTGTTCGCGTTGCAAAGAAG
TGGAGGTCGACTGGCGACTTCATGTCCAGAGCGGACACACCTGGAGACTA
TCTGATAGAATTACTGATGCTGGAAGCTTTCACTGGTGCTCCATGCATGC
CGCATGGGCCTGAGCTATTCGGTATTGTTATTCGTCGCTTCTTATCCCTG
GCGGCTACGCAATCTGGTACAGGGTCTGACGTCATGGCCGATGATAGCAT
GCCCAAATCCATGTTGTGGTGGGACAGATATTTTAATCGCGGAGTCATTG
ACATGTGCATGGCAAAAGGTATGTTGGATGTGCGACGTAGCGATCTATGC
TCTATAATTGTGGTTGATCCAGCTGTCCCCTTTGTTAATGTTGCACGGTC
TGTGCCAGACTGGACGGAGATGAGAAGATGTGCCAGAGAAAGCCTAAGTA
GCTTCCAGAACACTGACTTGCTAGATAGTCTGCAAGATAAGGTACAAGCA
TTGACAGAAGGCATGCGTGAAGTTATCAGTGGTATGCAGAACCAAATTGA
AACGCTACAACGGCTGGCTAAATCTCCAAGGCGGTGGTCTGGAGATGTGC
AGTTTAATGAGGCGCATATGAACAGCGAGACTTGGACAACAGTGATGGAG
GTTGAGCTGCACACAATCCCATGGCGAGTGAATGCTAGGAAAGCCAAAAC
GGACGGCACGGGGTATATGACGTCTGTTGATATCAGTTTACAAATGATGG
GAAAGAAACTTGAACAAACGATGGATGTTGATGTGTCGTTCAGAGGTGGG
ACGAGCAATCTGGTCTTCGACCCTAGTGTTGCCCATGTTTTGATTTGCAG
GCGCTCAGAGATTGTTAGGAATAGGGACTACCCAATGCAGATCACGGTTA
TTGGATGA

Coding sequence (CDS) from alignment at tig00000860_pilon:112304..113761+

>Ggra8784.t1 ID=Ggra8784.t1|Name=Ggra8784.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1458bp|location=Sequence derived from alignment at tig00000860_pilon:112304..113761+ (Gracilaria gracilis GNS1m male)
ATGGTGTCCAATCTATATCTAGAACCAAATGGGTCAAACGAAACACCTTG
GGGTATTAGCTGGGCGGAGCTCTTTACCTCACTCCGCCCAAACCAAGAAG
AGATTACGGTAATCAAATCTATCATTTCTCAAGTCGAAGATGTTCTCAAG
AACGCTGGTCTGTCTCATGATCTTCGGCCCGGAGGATCATTTGGGAAGAA
AACGATGACAAAAGGCGACAGTGAACTTCACCTTTACTCTTTTCAGCAAG
ATTTCCAGCCAGAGAACTACTTCGAATCACACCTCAAGCCCATCCTGGAA
GCTTTGAAAGAGGAAAAACGATTTGCGGAGCTAAAGGAGAGTGGCTACGC
AGCCGTCTTTAATACAAACGGAATTGAGGTGCGTGTATTCGCGGCTGGGA
CGTTGTACGGGGGGCCGAAAGATCTGCTGCTCCCTCCAAAGTCGAGCGAG
AAGCAATCTGCGCGCATAATGCCTGACATTGCACGGGGGCATCAGCTCGC
TCGTGATGTACATGTCGAAACTAGCTGTTCTCTTCTTCGCATACAGACTA
TTGCAAACCAGGCTCCTTTGTATCATGATCTTGTTCGCGTTGCAAAGAAG
TGGAGGTCGACTGGCGACTTCATGTCCAGAGCGGACACACCTGGAGACTA
TCTGATAGAATTACTGATGCTGGAAGCTTTCACTGGTGCTCCATGCATGC
CGCATGGGCCTGAGCTATTCGGTATTGTTATTCGTCGCTTCTTATCCCTG
GCGGCTACGCAATCTGGTACAGGGTCTGACGTCATGGCCGATGATAGCAT
GCCCAAATCCATGTTGTGGTGGGACAGATATTTTAATCGCGGAGTCATTG
ACATGTGCATGGCAAAAGGTATGTTGGATGTGCGACGTAGCGATCTATGC
TCTATAATTGTGGTTGATCCAGCTGTCCCCTTTGTTAATGTTGCACGGTC
TGTGCCAGACTGGACGGAGATGAGAAGATGTGCCAGAGAAAGCCTAAGTA
GCTTCCAGAACACTGACTTGCTAGATAGTCTGCAAGATAAGGTACAAGCA
TTGACAGAAGGCATGCGTGAAGTTATCAGTGGTATGCAGAACCAAATTGA
AACGCTACAACGGCTGGCTAAATCTCCAAGGCGGTGGTCTGGAGATGTGC
AGTTTAATGAGGCGCATATGAACAGCGAGACTTGGACAACAGTGATGGAG
GTTGAGCTGCACACAATCCCATGGCGAGTGAATGCTAGGAAAGCCAAAAC
GGACGGCACGGGGTATATGACGTCTGTTGATATCAGTTTACAAATGATGG
GAAAGAAACTTGAACAAACGATGGATGTTGATGTGTCGTTCAGAGGTGGG
ACGAGCAATCTGGTCTTCGACCCTAGTGTTGCCCATGTTTTGATTTGCAG
GCGCTCAGAGATTGTTAGGAATAGGGACTACCCAATGCAGATCACGGTTA
TTGGATGA