Ggra8783.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8783.t1
Unique Name	Ggra8783.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	546

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:107783..109420 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2850.Phatr48253
PFAMs	BACK,BTB,Kelch_1,Kelch_4,Kelch_6
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K10442,ko:K20285,ko:K21912
Evalue	3.65e-64
EggNOG OGs	KOG4441@1\|root,KOG4441@2759\|Eukaryota
Description	protein ubiquitination
COG category	KLT
BRITE	ko00000,ko04121,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8783	Ggra8783	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 107783..109420 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8783.t1.stop1	Ggra8783.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 107783..107785 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8783.t1.CDS1	Ggra8783.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 107783..109420 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8783.t1.exon1	Ggra8783.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 107783..109420 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8783.t1.start1	Ggra8783.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 109418..109420 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8783.t1	Ggra8783.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 107783..109420 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:107783..109420-
coding sequence from alignment at tig00000860_pilon:107783..109420-

mRNA sequence

>Ggra8783.t1 ID=Ggra8783.t1|Name=Ggra8783.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=546bp
MKICLLLLSAILSIALGNDGNNFIKTNVGGGELLDIGFLKDEAYFYEQST
GIVQSYIDPGFVPPAIPWGEVYRSHRYAEGGSLTYRFPVPDGTFKVGLMF
MEQFDGAARAGGRIMDLYINGEALDKGIDVWSLAGGKLFEPYFLQKLDIA
SLDGYISITLDPVVENPMLSGIVIEGEGASSVLWNTVNGATPTPMPMGAA
APTPVAAAVEVVAPPPPAPVDVAATGTTGVWTNVEYNSGAPTARHEACAL
FADGLVYALGGRGKKDISVYDPLTKTWSSKSGPPVEVNHMQCVYYQKQIW
IGGSWYGQFPMEKEHEVMWVYDIASDSWVQKSGLDEGRRRGGGAFVLHEG
KMYMSHGAIGGHGPHAISTGLFDVYDPMTDSWTALAPAPNARDHTTGAMV
NGKLCVGGGRDGGQADFWNANVGPIDCYNFGTGAWEEKAALPVARGGTMV
GTTCSGLLMIAGGEGKTVENTVGQAFDRVDLFREETNSFEEATYMTSARH
GSGLAITSCECGHIYVPSGSAGLGGGPEVSTTDVWSEDGIVRACV*

spliced messenger RNA

>Ggra8783.t1 ID=Ggra8783.t1|Name=Ggra8783.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1638bp|location=Sequence derived from alignment at tig00000860_pilon:107783..109420- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGATTTGTTTGCTGTTGCTCAGCGCAATACTATCCATTGCATTAGG
AAACGACGGCAACAACTTCATCAAAACAAATGTCGGTGGCGGCGAACTAC
TGGACATCGGCTTCTTGAAAGATGAGGCTTATTTCTATGAGCAGAGCACT
GGGATTGTTCAGTCATATATCGACCCCGGTTTCGTACCACCAGCCATACC
ATGGGGCGAAGTTTATCGCTCCCACCGTTACGCGGAGGGGGGTTCTTTAA
CGTATCGTTTCCCAGTACCAGATGGCACCTTCAAGGTCGGTCTCATGTTT
ATGGAGCAATTTGACGGAGCTGCCAGGGCGGGAGGACGCATCATGGACCT
CTACATTAATGGCGAAGCACTTGACAAGGGTATTGATGTGTGGTCACTCG
CCGGGGGGAAGCTGTTCGAACCATACTTTCTCCAGAAACTCGACATTGCT
TCTCTCGACGGTTACATCTCCATTACTCTCGACCCAGTGGTTGAAAACCC
AATGCTCAGCGGCATTGTCATCGAGGGAGAAGGAGCTTCAAGCGTGCTGT
GGAATACTGTGAATGGTGCGACTCCAACTCCGATGCCTATGGGCGCTGCA
GCTCCGACACCGGTCGCCGCTGCCGTCGAGGTGGTAGCACCGCCGCCACC
TGCCCCTGTGGACGTAGCTGCCACTGGTACAACAGGCGTTTGGACAAACG
TTGAATACAACTCTGGCGCGCCGACAGCGAGACATGAGGCGTGCGCGTTG
TTCGCCGACGGCCTGGTGTACGCGCTGGGAGGAAGAGGAAAGAAAGACAT
TAGCGTATACGACCCCCTCACCAAGACATGGAGCTCAAAGAGCGGACCGC
CGGTGGAGGTGAATCACATGCAATGCGTGTACTACCAGAAGCAAATCTGG
ATTGGCGGCAGTTGGTACGGACAGTTCCCAATGGAGAAGGAGCATGAAGT
GATGTGGGTGTACGACATTGCGAGCGACTCGTGGGTGCAGAAGTCCGGCT
TGGACGAGGGACGTCGTCGCGGTGGCGGTGCGTTTGTTCTTCACGAAGGG
AAGATGTACATGTCGCACGGCGCTATTGGCGGACATGGGCCTCATGCGAT
TTCCACCGGGCTGTTTGATGTGTACGACCCAATGACGGACTCCTGGACAG
CTCTGGCGCCCGCGCCGAACGCCAGAGACCACACGACGGGCGCGATGGTG
AACGGCAAGCTGTGCGTGGGTGGTGGACGTGATGGCGGACAGGCTGACTT
TTGGAACGCCAACGTGGGTCCGATTGACTGCTACAACTTTGGCACTGGCG
CATGGGAAGAAAAGGCAGCTCTGCCAGTGGCGAGAGGAGGCACTATGGTA
GGCACGACATGCAGCGGGCTGTTGATGATTGCTGGCGGGGAAGGAAAGAC
GGTTGAGAACACTGTTGGACAGGCGTTTGACAGAGTGGACCTATTTAGGG
AAGAGACGAATAGTTTCGAAGAGGCGACTTACATGACGAGTGCTCGGCAC
GGCTCAGGGCTTGCGATCACGTCTTGTGAGTGTGGACATATTTACGTGCC
GTCTGGTTCGGCTGGTCTGGGTGGTGGACCTGAGGTGAGCACGACAGATG
TTTGGAGCGAGGACGGAATTGTGAGGGCGTGCGTTTGA

protein sequence of Ggra8783.t1

>Ggra8783.t1 ID=Ggra8783.t1|Name=Ggra8783.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=546bp
MKICLLLLSAILSIALGNDGNNFIKTNVGGGELLDIGFLKDEAYFYEQST
GIVQSYIDPGFVPPAIPWGEVYRSHRYAEGGSLTYRFPVPDGTFKVGLMF
MEQFDGAARAGGRIMDLYINGEALDKGIDVWSLAGGKLFEPYFLQKLDIA
SLDGYISITLDPVVENPMLSGIVIEGEGASSVLWNTVNGATPTPMPMGAA
APTPVAAAVEVVAPPPPAPVDVAATGTTGVWTNVEYNSGAPTARHEACAL
FADGLVYALGGRGKKDISVYDPLTKTWSSKSGPPVEVNHMQCVYYQKQIW
IGGSWYGQFPMEKEHEVMWVYDIASDSWVQKSGLDEGRRRGGGAFVLHEG
KMYMSHGAIGGHGPHAISTGLFDVYDPMTDSWTALAPAPNARDHTTGAMV
NGKLCVGGGRDGGQADFWNANVGPIDCYNFGTGAWEEKAALPVARGGTMV
GTTCSGLLMIAGGEGKTVENTVGQAFDRVDLFREETNSFEEATYMTSARH
GSGLAITSCECGHIYVPSGSAGLGGGPEVSTTDVWSEDGIVRACV*

mRNA from alignment at tig00000860_pilon:107783..109420-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8783.t1 ID=Ggra8783.t1|Name=Ggra8783.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1638bp|location=Sequence derived from alignment at tig00000860_pilon:107783..109420- (Gracilaria gracilis GNS1m male)
ATGAAGATTTGTTTGCTGTTGCTCAGCGCAATACTATCCATTGCATTAGG
AAACGACGGCAACAACTTCATCAAAACAAATGTCGGTGGCGGCGAACTAC
TGGACATCGGCTTCTTGAAAGATGAGGCTTATTTCTATGAGCAGAGCACT
GGGATTGTTCAGTCATATATCGACCCCGGTTTCGTACCACCAGCCATACC
ATGGGGCGAAGTTTATCGCTCCCACCGTTACGCGGAGGGGGGTTCTTTAA
CGTATCGTTTCCCAGTACCAGATGGCACCTTCAAGGTCGGTCTCATGTTT
ATGGAGCAATTTGACGGAGCTGCCAGGGCGGGAGGACGCATCATGGACCT
CTACATTAATGGCGAAGCACTTGACAAGGGTATTGATGTGTGGTCACTCG
CCGGGGGGAAGCTGTTCGAACCATACTTTCTCCAGAAACTCGACATTGCT
TCTCTCGACGGTTACATCTCCATTACTCTCGACCCAGTGGTTGAAAACCC
AATGCTCAGCGGCATTGTCATCGAGGGAGAAGGAGCTTCAAGCGTGCTGT
GGAATACTGTGAATGGTGCGACTCCAACTCCGATGCCTATGGGCGCTGCA
GCTCCGACACCGGTCGCCGCTGCCGTCGAGGTGGTAGCACCGCCGCCACC
TGCCCCTGTGGACGTAGCTGCCACTGGTACAACAGGCGTTTGGACAAACG
TTGAATACAACTCTGGCGCGCCGACAGCGAGACATGAGGCGTGCGCGTTG
TTCGCCGACGGCCTGGTGTACGCGCTGGGAGGAAGAGGAAAGAAAGACAT
TAGCGTATACGACCCCCTCACCAAGACATGGAGCTCAAAGAGCGGACCGC
CGGTGGAGGTGAATCACATGCAATGCGTGTACTACCAGAAGCAAATCTGG
ATTGGCGGCAGTTGGTACGGACAGTTCCCAATGGAGAAGGAGCATGAAGT
GATGTGGGTGTACGACATTGCGAGCGACTCGTGGGTGCAGAAGTCCGGCT
TGGACGAGGGACGTCGTCGCGGTGGCGGTGCGTTTGTTCTTCACGAAGGG
AAGATGTACATGTCGCACGGCGCTATTGGCGGACATGGGCCTCATGCGAT
TTCCACCGGGCTGTTTGATGTGTACGACCCAATGACGGACTCCTGGACAG
CTCTGGCGCCCGCGCCGAACGCCAGAGACCACACGACGGGCGCGATGGTG
AACGGCAAGCTGTGCGTGGGTGGTGGACGTGATGGCGGACAGGCTGACTT
TTGGAACGCCAACGTGGGTCCGATTGACTGCTACAACTTTGGCACTGGCG
CATGGGAAGAAAAGGCAGCTCTGCCAGTGGCGAGAGGAGGCACTATGGTA
GGCACGACATGCAGCGGGCTGTTGATGATTGCTGGCGGGGAAGGAAAGAC
GGTTGAGAACACTGTTGGACAGGCGTTTGACAGAGTGGACCTATTTAGGG
AAGAGACGAATAGTTTCGAAGAGGCGACTTACATGACGAGTGCTCGGCAC
GGCTCAGGGCTTGCGATCACGTCTTGTGAGTGTGGACATATTTACGTGCC
GTCTGGTTCGGCTGGTCTGGGTGGTGGACCTGAGGTGAGCACGACAGATG
TTTGGAGCGAGGACGGAATTGTGAGGGCGTGCGTTTGA

Coding sequence (CDS) from alignment at tig00000860_pilon:107783..109420-

>Ggra8783.t1 ID=Ggra8783.t1|Name=Ggra8783.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1638bp|location=Sequence derived from alignment at tig00000860_pilon:107783..109420- (Gracilaria gracilis GNS1m male)
ATGAAGATTTGTTTGCTGTTGCTCAGCGCAATACTATCCATTGCATTAGG
AAACGACGGCAACAACTTCATCAAAACAAATGTCGGTGGCGGCGAACTAC
TGGACATCGGCTTCTTGAAAGATGAGGCTTATTTCTATGAGCAGAGCACT
GGGATTGTTCAGTCATATATCGACCCCGGTTTCGTACCACCAGCCATACC
ATGGGGCGAAGTTTATCGCTCCCACCGTTACGCGGAGGGGGGTTCTTTAA
CGTATCGTTTCCCAGTACCAGATGGCACCTTCAAGGTCGGTCTCATGTTT
ATGGAGCAATTTGACGGAGCTGCCAGGGCGGGAGGACGCATCATGGACCT
CTACATTAATGGCGAAGCACTTGACAAGGGTATTGATGTGTGGTCACTCG
CCGGGGGGAAGCTGTTCGAACCATACTTTCTCCAGAAACTCGACATTGCT
TCTCTCGACGGTTACATCTCCATTACTCTCGACCCAGTGGTTGAAAACCC
AATGCTCAGCGGCATTGTCATCGAGGGAGAAGGAGCTTCAAGCGTGCTGT
GGAATACTGTGAATGGTGCGACTCCAACTCCGATGCCTATGGGCGCTGCA
GCTCCGACACCGGTCGCCGCTGCCGTCGAGGTGGTAGCACCGCCGCCACC
TGCCCCTGTGGACGTAGCTGCCACTGGTACAACAGGCGTTTGGACAAACG
TTGAATACAACTCTGGCGCGCCGACAGCGAGACATGAGGCGTGCGCGTTG
TTCGCCGACGGCCTGGTGTACGCGCTGGGAGGAAGAGGAAAGAAAGACAT
TAGCGTATACGACCCCCTCACCAAGACATGGAGCTCAAAGAGCGGACCGC
CGGTGGAGGTGAATCACATGCAATGCGTGTACTACCAGAAGCAAATCTGG
ATTGGCGGCAGTTGGTACGGACAGTTCCCAATGGAGAAGGAGCATGAAGT
GATGTGGGTGTACGACATTGCGAGCGACTCGTGGGTGCAGAAGTCCGGCT
TGGACGAGGGACGTCGTCGCGGTGGCGGTGCGTTTGTTCTTCACGAAGGG
AAGATGTACATGTCGCACGGCGCTATTGGCGGACATGGGCCTCATGCGAT
TTCCACCGGGCTGTTTGATGTGTACGACCCAATGACGGACTCCTGGACAG
CTCTGGCGCCCGCGCCGAACGCCAGAGACCACACGACGGGCGCGATGGTG
AACGGCAAGCTGTGCGTGGGTGGTGGACGTGATGGCGGACAGGCTGACTT
TTGGAACGCCAACGTGGGTCCGATTGACTGCTACAACTTTGGCACTGGCG
CATGGGAAGAAAAGGCAGCTCTGCCAGTGGCGAGAGGAGGCACTATGGTA
GGCACGACATGCAGCGGGCTGTTGATGATTGCTGGCGGGGAAGGAAAGAC
GGTTGAGAACACTGTTGGACAGGCGTTTGACAGAGTGGACCTATTTAGGG
AAGAGACGAATAGTTTCGAAGAGGCGACTTACATGACGAGTGCTCGGCAC
GGCTCAGGGCTTGCGATCACGTCTTGTGAGTGTGGACATATTTACGTGCC
GTCTGGTTCGGCTGGTCTGGGTGGTGGACCTGAGGTGAGCACGACAGATG
TTTGGAGCGAGGACGGAATTGTGAGGGCGTGCGTTTGA