Ggra8782.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8782.t1
Unique NameGgra8782.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length163
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:106618..107106 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8782Ggra8782Gracilaria gracilis GNS1m malegenetig00000860_pilon 106618..107106 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8782.t1.stop1Ggra8782.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 106618..106620 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8782.t1.CDS1Ggra8782.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 106618..107106 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8782.t1.exon1Ggra8782.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 106618..107106 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8782.t1.start1Ggra8782.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 107104..107106 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8782.t1Ggra8782.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 106618..107106 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8782.t1 ID=Ggra8782.t1|Name=Ggra8782.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=163bp
MDAESGALRAISLHGGLSIEAVTFEVDDKAASSRLMCALTPTVPEPVYLQ
AATNTGSDSEKQSDDTSEVDAKSDVHAKSDKHIKLVGDVSDAASDKASPC
ASFALGVFVGVVPPVLLVRLFARNCVSKCFPAVDGRWFRYGRSLGLLLLV
LLCILVAVLRIY*
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spliced messenger RNA

>Ggra8782.t1 ID=Ggra8782.t1|Name=Ggra8782.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=489bp|location=Sequence derived from alignment at tig00000860_pilon:106618..107106- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCCGAATCGGGTGCTTTGCGCGCCATCTCGTTGCACGGCGGGCT
CAGTATTGAAGCGGTTACGTTCGAAGTTGATGACAAGGCTGCGTCGAGTC
GGTTGATGTGTGCGCTTACTCCTACCGTTCCGGAGCCCGTTTACTTGCAA
GCAGCGACCAACACTGGCAGTGACAGCGAGAAACAAAGCGATGATACCAG
CGAGGTGGACGCCAAGAGCGACGTGCACGCCAAGAGCGACAAGCACATCA
AGCTTGTGGGCGATGTGAGTGATGCCGCCTCCGACAAAGCGTCGCCTTGC
GCTTCGTTTGCACTCGGCGTGTTCGTGGGCGTGGTACCACCCGTGCTGCT
CGTGAGGCTGTTCGCGAGAAACTGCGTCAGCAAGTGCTTCCCCGCCGTGG
ACGGCCGCTGGTTTCGGTACGGCCGATCGCTGGGCCTACTGCTCCTTGTG
TTGCTCTGTATCTTGGTTGCCGTGTTACGCATCTACTAG
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protein sequence of Ggra8782.t1

>Ggra8782.t1 ID=Ggra8782.t1|Name=Ggra8782.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=163bp
MDAESGALRAISLHGGLSIEAVTFEVDDKAASSRLMCALTPTVPEPVYLQ
AATNTGSDSEKQSDDTSEVDAKSDVHAKSDKHIKLVGDVSDAASDKASPC
ASFALGVFVGVVPPVLLVRLFARNCVSKCFPAVDGRWFRYGRSLGLLLLV
LLCILVAVLRIY*
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mRNA from alignment at tig00000860_pilon:106618..107106-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8782.t1 ID=Ggra8782.t1|Name=Ggra8782.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=489bp|location=Sequence derived from alignment at tig00000860_pilon:106618..107106- (Gracilaria gracilis GNS1m male)
ATGGACGCCGAATCGGGTGCTTTGCGCGCCATCTCGTTGCACGGCGGGCT
CAGTATTGAAGCGGTTACGTTCGAAGTTGATGACAAGGCTGCGTCGAGTC
GGTTGATGTGTGCGCTTACTCCTACCGTTCCGGAGCCCGTTTACTTGCAA
GCAGCGACCAACACTGGCAGTGACAGCGAGAAACAAAGCGATGATACCAG
CGAGGTGGACGCCAAGAGCGACGTGCACGCCAAGAGCGACAAGCACATCA
AGCTTGTGGGCGATGTGAGTGATGCCGCCTCCGACAAAGCGTCGCCTTGC
GCTTCGTTTGCACTCGGCGTGTTCGTGGGCGTGGTACCACCCGTGCTGCT
CGTGAGGCTGTTCGCGAGAAACTGCGTCAGCAAGTGCTTCCCCGCCGTGG
ACGGCCGCTGGTTTCGGTACGGCCGATCGCTGGGCCTACTGCTCCTTGTG
TTGCTCTGTATCTTGGTTGCCGTGTTACGCATCTACTAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:106618..107106-

>Ggra8782.t1 ID=Ggra8782.t1|Name=Ggra8782.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=489bp|location=Sequence derived from alignment at tig00000860_pilon:106618..107106- (Gracilaria gracilis GNS1m male)
ATGGACGCCGAATCGGGTGCTTTGCGCGCCATCTCGTTGCACGGCGGGCT
CAGTATTGAAGCGGTTACGTTCGAAGTTGATGACAAGGCTGCGTCGAGTC
GGTTGATGTGTGCGCTTACTCCTACCGTTCCGGAGCCCGTTTACTTGCAA
GCAGCGACCAACACTGGCAGTGACAGCGAGAAACAAAGCGATGATACCAG
CGAGGTGGACGCCAAGAGCGACGTGCACGCCAAGAGCGACAAGCACATCA
AGCTTGTGGGCGATGTGAGTGATGCCGCCTCCGACAAAGCGTCGCCTTGC
GCTTCGTTTGCACTCGGCGTGTTCGTGGGCGTGGTACCACCCGTGCTGCT
CGTGAGGCTGTTCGCGAGAAACTGCGTCAGCAAGTGCTTCCCCGCCGTGG
ACGGCCGCTGGTTTCGGTACGGCCGATCGCTGGGCCTACTGCTCCTTGTG
TTGCTCTGTATCTTGGTTGCCGTGTTACGCATCTACTAG
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