Ggra8781.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8781.t1
Unique Name	Ggra8781.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	546

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:104177..105814 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2850.Phatr48253
PFAMs	BACK,BTB,Kelch_1,Kelch_4,Kelch_6
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K10442,ko:K20285,ko:K21912
Evalue	1.27e-72
EggNOG OGs	KOG4441@1\|root,KOG4441@2759\|Eukaryota
Description	protein ubiquitination
COG category	KLT
BRITE	ko00000,ko04121,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8781	Ggra8781	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 104177..105814 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8781.t1.start1	Ggra8781.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 104177..104179 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8781.t1.CDS1	Ggra8781.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 104177..105814 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8781.t1.exon1	Ggra8781.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 104177..105814 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8781.t1.stop1	Ggra8781.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 105812..105814 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8781.t1	Ggra8781.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 104177..105814 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:104177..105814+
coding sequence from alignment at tig00000860_pilon:104177..105814+

mRNA sequence

>Ggra8781.t1 ID=Ggra8781.t1|Name=Ggra8781.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=546bp
MPRSVPVFVALLLALVCASHAVTMPHPNIVSVDLPTVVHADGVADPTCAR
GIANEEVCCAPSCGTCGGSGCHLRPGGSWACCMGTIRRRGRNCNFTGYPC
SNPDGLGTTSPPTTTAATTTVPPTTTMATTTMPPTTTMATTTMPPTTTMA
TTTMPPTTTMATTTMPPTTTMATTTMPPTTTMATTTMPPTTTMATTTMPP
TTTMATTMPPTTTMATTMPPTTTAATAPPSTNPVWHTVSISRGALTPRHE
ACFVWSNGKGYLLGGRGVKPVDIFNPVDNSWSQGRSPGIQLHHMQCVAYK
NKIYIVSAWTGGFPKETNADKIYIYDIGSNSWSTKPGLPEGRRRGGSASV
LYDDKIYVVAGNRGGHGSHATTLGWMDYYDLNTGMWVTDLPTMPEARDHV
GGSVVNGNKLCIAGGRNGGVSGFFTATIASTYCFSFSTGKWQNMNAPIPA
PRAGASYGTTCAGHMMIAGGERTDAFSQVDVFNGSGWTTVASLQQKRHGS
GLGVSACSCGQIFIASGSGRKGGSPELPSTEVFLPTGNAARCAVY*

spliced messenger RNA

>Ggra8781.t1 ID=Ggra8781.t1|Name=Ggra8781.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1638bp|location=Sequence derived from alignment at tig00000860_pilon:104177..105814+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCGTTCCGTACCCGTCTTCGTCGCCCTTTTGCTGGCACTCGTGTG
CGCGTCCCACGCCGTTACCATGCCGCACCCGAACATCGTAAGCGTGGACT
TGCCCACCGTCGTGCACGCTGATGGAGTCGCGGATCCTACGTGCGCGCGC
GGTATCGCCAATGAAGAGGTGTGCTGTGCGCCGTCGTGCGGAACCTGTGG
CGGCTCTGGCTGTCACTTGAGACCGGGAGGCAGCTGGGCTTGTTGCATGG
GTACAATTCGCAGACGGGGACGTAATTGTAACTTTACTGGATACCCTTGT
TCCAATCCGGATGGACTCGGTACCACTAGCCCGCCCACTACTACTGCGGC
TACCACCACCGTGCCTCCGACTACCACTATGGCCACCACCACCATGCCTC
CAACTACCACTATGGCCACCACCACCATGCCTCCGACAACCACTATGGCC
ACCACCACCATGCCTCCGACAACCACTATGGCCACCACCACCATGCCTCC
GACTACCACTATGGCCACCACCACCATGCCTCCGACCACCACTATGGCCA
CCACCACCATGCCTCCGACCACCACTATGGCCACCACCACCATGCCTCCG
ACTACCACTATGGCCACTACCATGCCCCCGACTACTACGATGGCCACTAC
CATGCCTCCGACCACCACTGCGGCCACCGCGCCACCATCCACAAACCCGG
TATGGCACACGGTGTCCATCTCGAGAGGAGCATTGACTCCCCGTCACGAG
GCGTGTTTCGTGTGGTCCAACGGCAAGGGCTACCTTCTGGGCGGGCGCGG
CGTCAAGCCAGTGGACATTTTCAACCCCGTCGATAACTCGTGGAGCCAGG
GTCGAAGCCCAGGTATCCAGCTGCACCACATGCAATGCGTGGCCTACAAG
AACAAGATCTACATCGTGTCCGCATGGACGGGCGGCTTCCCGAAGGAAAC
GAATGCGGATAAGATCTATATCTACGACATTGGCTCCAACTCTTGGTCCA
CCAAGCCGGGCCTGCCTGAAGGTAGACGTCGCGGCGGCTCTGCTTCTGTA
CTGTACGACGATAAGATCTACGTGGTGGCCGGAAACAGAGGCGGGCACGG
AAGCCATGCCACCACTCTGGGCTGGATGGATTACTACGACTTGAACACTG
GAATGTGGGTGACGGACTTGCCCACCATGCCCGAAGCACGGGACCATGTT
GGAGGATCGGTGGTGAACGGCAACAAACTGTGCATTGCAGGTGGGAGAAA
CGGCGGCGTTTCAGGTTTCTTCACAGCAACTATCGCAAGCACATACTGTT
TCTCGTTCTCAACTGGCAAATGGCAGAACATGAACGCGCCAATCCCGGCT
CCGAGGGCGGGCGCCAGTTACGGAACGACGTGTGCGGGACACATGATGAT
TGCAGGAGGGGAACGAACTGATGCGTTCTCGCAGGTTGATGTGTTTAACG
GCAGCGGGTGGACAACTGTGGCCAGCCTTCAACAGAAGCGACATGGCTCC
GGATTGGGCGTGAGCGCGTGTTCCTGTGGTCAGATCTTCATCGCGTCTGG
GAGTGGACGGAAGGGAGGATCTCCCGAGTTACCATCCACGGAGGTGTTCC
TGCCGACTGGCAACGCGGCGCGCTGCGCAGTTTACTAA

protein sequence of Ggra8781.t1

>Ggra8781.t1 ID=Ggra8781.t1|Name=Ggra8781.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=546bp
MPRSVPVFVALLLALVCASHAVTMPHPNIVSVDLPTVVHADGVADPTCAR
GIANEEVCCAPSCGTCGGSGCHLRPGGSWACCMGTIRRRGRNCNFTGYPC
SNPDGLGTTSPPTTTAATTTVPPTTTMATTTMPPTTTMATTTMPPTTTMA
TTTMPPTTTMATTTMPPTTTMATTTMPPTTTMATTTMPPTTTMATTTMPP
TTTMATTMPPTTTMATTMPPTTTAATAPPSTNPVWHTVSISRGALTPRHE
ACFVWSNGKGYLLGGRGVKPVDIFNPVDNSWSQGRSPGIQLHHMQCVAYK
NKIYIVSAWTGGFPKETNADKIYIYDIGSNSWSTKPGLPEGRRRGGSASV
LYDDKIYVVAGNRGGHGSHATTLGWMDYYDLNTGMWVTDLPTMPEARDHV
GGSVVNGNKLCIAGGRNGGVSGFFTATIASTYCFSFSTGKWQNMNAPIPA
PRAGASYGTTCAGHMMIAGGERTDAFSQVDVFNGSGWTTVASLQQKRHGS
GLGVSACSCGQIFIASGSGRKGGSPELPSTEVFLPTGNAARCAVY*

mRNA from alignment at tig00000860_pilon:104177..105814+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8781.t1 ID=Ggra8781.t1|Name=Ggra8781.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1638bp|location=Sequence derived from alignment at tig00000860_pilon:104177..105814+ (Gracilaria gracilis GNS1m male)
ATGCCTCGTTCCGTACCCGTCTTCGTCGCCCTTTTGCTGGCACTCGTGTG
CGCGTCCCACGCCGTTACCATGCCGCACCCGAACATCGTAAGCGTGGACT
TGCCCACCGTCGTGCACGCTGATGGAGTCGCGGATCCTACGTGCGCGCGC
GGTATCGCCAATGAAGAGGTGTGCTGTGCGCCGTCGTGCGGAACCTGTGG
CGGCTCTGGCTGTCACTTGAGACCGGGAGGCAGCTGGGCTTGTTGCATGG
GTACAATTCGCAGACGGGGACGTAATTGTAACTTTACTGGATACCCTTGT
TCCAATCCGGATGGACTCGGTACCACTAGCCCGCCCACTACTACTGCGGC
TACCACCACCGTGCCTCCGACTACCACTATGGCCACCACCACCATGCCTC
CAACTACCACTATGGCCACCACCACCATGCCTCCGACAACCACTATGGCC
ACCACCACCATGCCTCCGACAACCACTATGGCCACCACCACCATGCCTCC
GACTACCACTATGGCCACCACCACCATGCCTCCGACCACCACTATGGCCA
CCACCACCATGCCTCCGACCACCACTATGGCCACCACCACCATGCCTCCG
ACTACCACTATGGCCACTACCATGCCCCCGACTACTACGATGGCCACTAC
CATGCCTCCGACCACCACTGCGGCCACCGCGCCACCATCCACAAACCCGG
TATGGCACACGGTGTCCATCTCGAGAGGAGCATTGACTCCCCGTCACGAG
GCGTGTTTCGTGTGGTCCAACGGCAAGGGCTACCTTCTGGGCGGGCGCGG
CGTCAAGCCAGTGGACATTTTCAACCCCGTCGATAACTCGTGGAGCCAGG
GTCGAAGCCCAGGTATCCAGCTGCACCACATGCAATGCGTGGCCTACAAG
AACAAGATCTACATCGTGTCCGCATGGACGGGCGGCTTCCCGAAGGAAAC
GAATGCGGATAAGATCTATATCTACGACATTGGCTCCAACTCTTGGTCCA
CCAAGCCGGGCCTGCCTGAAGGTAGACGTCGCGGCGGCTCTGCTTCTGTA
CTGTACGACGATAAGATCTACGTGGTGGCCGGAAACAGAGGCGGGCACGG
AAGCCATGCCACCACTCTGGGCTGGATGGATTACTACGACTTGAACACTG
GAATGTGGGTGACGGACTTGCCCACCATGCCCGAAGCACGGGACCATGTT
GGAGGATCGGTGGTGAACGGCAACAAACTGTGCATTGCAGGTGGGAGAAA
CGGCGGCGTTTCAGGTTTCTTCACAGCAACTATCGCAAGCACATACTGTT
TCTCGTTCTCAACTGGCAAATGGCAGAACATGAACGCGCCAATCCCGGCT
CCGAGGGCGGGCGCCAGTTACGGAACGACGTGTGCGGGACACATGATGAT
TGCAGGAGGGGAACGAACTGATGCGTTCTCGCAGGTTGATGTGTTTAACG
GCAGCGGGTGGACAACTGTGGCCAGCCTTCAACAGAAGCGACATGGCTCC
GGATTGGGCGTGAGCGCGTGTTCCTGTGGTCAGATCTTCATCGCGTCTGG
GAGTGGACGGAAGGGAGGATCTCCCGAGTTACCATCCACGGAGGTGTTCC
TGCCGACTGGCAACGCGGCGCGCTGCGCAGTTTACTAA

Coding sequence (CDS) from alignment at tig00000860_pilon:104177..105814+

>Ggra8781.t1 ID=Ggra8781.t1|Name=Ggra8781.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1638bp|location=Sequence derived from alignment at tig00000860_pilon:104177..105814+ (Gracilaria gracilis GNS1m male)
ATGCCTCGTTCCGTACCCGTCTTCGTCGCCCTTTTGCTGGCACTCGTGTG
CGCGTCCCACGCCGTTACCATGCCGCACCCGAACATCGTAAGCGTGGACT
TGCCCACCGTCGTGCACGCTGATGGAGTCGCGGATCCTACGTGCGCGCGC
GGTATCGCCAATGAAGAGGTGTGCTGTGCGCCGTCGTGCGGAACCTGTGG
CGGCTCTGGCTGTCACTTGAGACCGGGAGGCAGCTGGGCTTGTTGCATGG
GTACAATTCGCAGACGGGGACGTAATTGTAACTTTACTGGATACCCTTGT
TCCAATCCGGATGGACTCGGTACCACTAGCCCGCCCACTACTACTGCGGC
TACCACCACCGTGCCTCCGACTACCACTATGGCCACCACCACCATGCCTC
CAACTACCACTATGGCCACCACCACCATGCCTCCGACAACCACTATGGCC
ACCACCACCATGCCTCCGACAACCACTATGGCCACCACCACCATGCCTCC
GACTACCACTATGGCCACCACCACCATGCCTCCGACCACCACTATGGCCA
CCACCACCATGCCTCCGACCACCACTATGGCCACCACCACCATGCCTCCG
ACTACCACTATGGCCACTACCATGCCCCCGACTACTACGATGGCCACTAC
CATGCCTCCGACCACCACTGCGGCCACCGCGCCACCATCCACAAACCCGG
TATGGCACACGGTGTCCATCTCGAGAGGAGCATTGACTCCCCGTCACGAG
GCGTGTTTCGTGTGGTCCAACGGCAAGGGCTACCTTCTGGGCGGGCGCGG
CGTCAAGCCAGTGGACATTTTCAACCCCGTCGATAACTCGTGGAGCCAGG
GTCGAAGCCCAGGTATCCAGCTGCACCACATGCAATGCGTGGCCTACAAG
AACAAGATCTACATCGTGTCCGCATGGACGGGCGGCTTCCCGAAGGAAAC
GAATGCGGATAAGATCTATATCTACGACATTGGCTCCAACTCTTGGTCCA
CCAAGCCGGGCCTGCCTGAAGGTAGACGTCGCGGCGGCTCTGCTTCTGTA
CTGTACGACGATAAGATCTACGTGGTGGCCGGAAACAGAGGCGGGCACGG
AAGCCATGCCACCACTCTGGGCTGGATGGATTACTACGACTTGAACACTG
GAATGTGGGTGACGGACTTGCCCACCATGCCCGAAGCACGGGACCATGTT
GGAGGATCGGTGGTGAACGGCAACAAACTGTGCATTGCAGGTGGGAGAAA
CGGCGGCGTTTCAGGTTTCTTCACAGCAACTATCGCAAGCACATACTGTT
TCTCGTTCTCAACTGGCAAATGGCAGAACATGAACGCGCCAATCCCGGCT
CCGAGGGCGGGCGCCAGTTACGGAACGACGTGTGCGGGACACATGATGAT
TGCAGGAGGGGAACGAACTGATGCGTTCTCGCAGGTTGATGTGTTTAACG
GCAGCGGGTGGACAACTGTGGCCAGCCTTCAACAGAAGCGACATGGCTCC
GGATTGGGCGTGAGCGCGTGTTCCTGTGGTCAGATCTTCATCGCGTCTGG
GAGTGGACGGAAGGGAGGATCTCCCGAGTTACCATCCACGGAGGTGTTCC
TGCCGACTGGCAACGCGGCGCGCTGCGCAGTTTACTAA