Ggra8779.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8779.t1
Unique NameGgra8779.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length458
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:98351..99724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709210.1
PFAMsAbi
Max annot lvl2759|Eukaryota
KEGG koko:K07052
Evalue1.11e-134
EggNOG OGsCOG1266@1|root,2QR9S@2759|Eukaryota
DescriptionCAAX protease self-immunity
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8779Ggra8779Gracilaria gracilis GNS1m malegenetig00000860_pilon 98351..99724 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8779.t1.start1Ggra8779.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 98351..98353 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8779.t1.CDS1Ggra8779.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 98351..99724 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8779.t1.exon1Ggra8779.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 98351..99724 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8779.t1.stop1Ggra8779.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 99722..99724 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8779.t1Ggra8779.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 98351..99724 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8779.t1 ID=Ggra8779.t1|Name=Ggra8779.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=458bp
MAFDRVAFVPSSHGVRFVRGARRVSPSFRRTLSSPSPRLPNAPAVRRAFP
LRFAASADHAAADDASKLPDDPLQPFQPPSNSRQSSPSSSLQPQPSAPIE
ERAQPHAAHRPQWAPKWLPDFFLHLRTRPWLQLAIMLPLYAFHLFFLSTK
GFKFKNPIIPNSKNLFQSIGYESIAGAIVAVAMLLWRRYCMPRRHSQPLL
PNILSVENPPWKVPRDAKRRIGRTTVLLIVAYLISGYGAVFSEQILYLLA
GSGVPLTVATTRAWKVLLGHLMWVYMGIGILRRLKPFFPPKGSWLRWKWR
SNWLWWAIGGYYVSALFFNIADVVNQLVLPPSMFEEETVVSKLINPENKD
RVAMAIGSIGPCVSAPVFEEVLYRGFLLPALTCFLPMWAAIPASSVLFAI
HHLNPTMIIPLSMLGFIWANLYSQSRNLTVTILIHAMWNSRVFLGSLLGL
GTFTDFE*
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spliced messenger RNA

>Ggra8779.t1 ID=Ggra8779.t1|Name=Ggra8779.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1374bp|location=Sequence derived from alignment at tig00000860_pilon:98351..99724+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTTGACCGCGTCGCCTTTGTTCCCAGCTCGCACGGCGTGCGCTT
CGTGCGCGGCGCGCGGCGCGTCAGCCCGTCGTTTCGGCGCACGTTGTCGT
CGCCGTCGCCGCGTTTGCCCAATGCGCCTGCCGTGCGTCGCGCCTTTCCG
TTGCGCTTCGCCGCGTCTGCCGATCATGCCGCCGCCGACGATGCGTCCAA
GCTGCCGGACGACCCCCTGCAGCCGTTTCAGCCGCCGTCCAATTCGCGCC
AGTCCTCGCCTTCTTCCTCGCTGCAGCCGCAGCCTTCTGCGCCGATTGAG
GAGCGCGCGCAGCCGCACGCCGCGCACAGACCGCAGTGGGCGCCCAAATG
GCTTCCCGACTTTTTTCTCCACCTGCGAACACGCCCTTGGCTGCAGCTCG
CCATCATGCTCCCGCTTTACGCCTTTCATTTGTTCTTCCTCTCCACAAAG
GGCTTCAAGTTTAAGAACCCAATCATCCCCAATAGCAAGAACCTTTTTCA
GAGCATTGGCTACGAATCAATAGCGGGCGCCATTGTCGCCGTCGCCATGT
TGCTGTGGAGAAGATATTGTATGCCTCGACGCCACTCACAACCGCTGCTG
CCAAACATTCTCTCCGTTGAAAACCCCCCTTGGAAAGTCCCGCGCGATGC
AAAACGTCGTATTGGAAGGACCACCGTGCTGCTCATTGTGGCTTACCTCA
TCTCGGGTTACGGAGCAGTGTTCAGTGAGCAGATCTTGTATCTTCTGGCG
GGATCCGGCGTCCCATTAACTGTTGCAACCACGCGTGCGTGGAAGGTATT
GCTGGGTCATCTCATGTGGGTGTATATGGGCATAGGCATCTTGCGTCGAC
TAAAGCCTTTCTTTCCACCAAAAGGCTCGTGGCTGCGATGGAAGTGGCGG
AGTAACTGGTTGTGGTGGGCAATAGGTGGCTACTATGTTAGTGCCCTCTT
CTTCAACATTGCGGACGTTGTCAACCAGCTCGTGTTACCCCCGTCGATGT
TTGAAGAGGAAACAGTCGTAAGCAAGTTGATAAACCCCGAAAACAAAGAC
CGAGTTGCGATGGCAATTGGCTCAATTGGACCTTGTGTTTCAGCACCCGT
GTTTGAGGAGGTGCTGTACAGAGGCTTTTTGCTGCCAGCCTTAACCTGCT
TTTTGCCCATGTGGGCCGCAATCCCGGCCAGCTCCGTGCTCTTTGCTATC
CATCATCTGAATCCCACCATGATTATTCCACTTTCAATGCTAGGCTTCAT
TTGGGCTAATCTTTACTCGCAGTCTAGAAACCTCACCGTCACCATCTTGA
TTCATGCCATGTGGAACAGCAGAGTTTTCCTGGGCTCTTTGCTTGGTCTT
GGAACATTCACCGATTTTGAGTAA
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protein sequence of Ggra8779.t1

>Ggra8779.t1 ID=Ggra8779.t1|Name=Ggra8779.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=458bp
MAFDRVAFVPSSHGVRFVRGARRVSPSFRRTLSSPSPRLPNAPAVRRAFP
LRFAASADHAAADDASKLPDDPLQPFQPPSNSRQSSPSSSLQPQPSAPIE
ERAQPHAAHRPQWAPKWLPDFFLHLRTRPWLQLAIMLPLYAFHLFFLSTK
GFKFKNPIIPNSKNLFQSIGYESIAGAIVAVAMLLWRRYCMPRRHSQPLL
PNILSVENPPWKVPRDAKRRIGRTTVLLIVAYLISGYGAVFSEQILYLLA
GSGVPLTVATTRAWKVLLGHLMWVYMGIGILRRLKPFFPPKGSWLRWKWR
SNWLWWAIGGYYVSALFFNIADVVNQLVLPPSMFEEETVVSKLINPENKD
RVAMAIGSIGPCVSAPVFEEVLYRGFLLPALTCFLPMWAAIPASSVLFAI
HHLNPTMIIPLSMLGFIWANLYSQSRNLTVTILIHAMWNSRVFLGSLLGL
GTFTDFE*
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mRNA from alignment at tig00000860_pilon:98351..99724+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8779.t1 ID=Ggra8779.t1|Name=Ggra8779.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1374bp|location=Sequence derived from alignment at tig00000860_pilon:98351..99724+ (Gracilaria gracilis GNS1m male)
ATGGCGTTTGACCGCGTCGCCTTTGTTCCCAGCTCGCACGGCGTGCGCTT
CGTGCGCGGCGCGCGGCGCGTCAGCCCGTCGTTTCGGCGCACGTTGTCGT
CGCCGTCGCCGCGTTTGCCCAATGCGCCTGCCGTGCGTCGCGCCTTTCCG
TTGCGCTTCGCCGCGTCTGCCGATCATGCCGCCGCCGACGATGCGTCCAA
GCTGCCGGACGACCCCCTGCAGCCGTTTCAGCCGCCGTCCAATTCGCGCC
AGTCCTCGCCTTCTTCCTCGCTGCAGCCGCAGCCTTCTGCGCCGATTGAG
GAGCGCGCGCAGCCGCACGCCGCGCACAGACCGCAGTGGGCGCCCAAATG
GCTTCCCGACTTTTTTCTCCACCTGCGAACACGCCCTTGGCTGCAGCTCG
CCATCATGCTCCCGCTTTACGCCTTTCATTTGTTCTTCCTCTCCACAAAG
GGCTTCAAGTTTAAGAACCCAATCATCCCCAATAGCAAGAACCTTTTTCA
GAGCATTGGCTACGAATCAATAGCGGGCGCCATTGTCGCCGTCGCCATGT
TGCTGTGGAGAAGATATTGTATGCCTCGACGCCACTCACAACCGCTGCTG
CCAAACATTCTCTCCGTTGAAAACCCCCCTTGGAAAGTCCCGCGCGATGC
AAAACGTCGTATTGGAAGGACCACCGTGCTGCTCATTGTGGCTTACCTCA
TCTCGGGTTACGGAGCAGTGTTCAGTGAGCAGATCTTGTATCTTCTGGCG
GGATCCGGCGTCCCATTAACTGTTGCAACCACGCGTGCGTGGAAGGTATT
GCTGGGTCATCTCATGTGGGTGTATATGGGCATAGGCATCTTGCGTCGAC
TAAAGCCTTTCTTTCCACCAAAAGGCTCGTGGCTGCGATGGAAGTGGCGG
AGTAACTGGTTGTGGTGGGCAATAGGTGGCTACTATGTTAGTGCCCTCTT
CTTCAACATTGCGGACGTTGTCAACCAGCTCGTGTTACCCCCGTCGATGT
TTGAAGAGGAAACAGTCGTAAGCAAGTTGATAAACCCCGAAAACAAAGAC
CGAGTTGCGATGGCAATTGGCTCAATTGGACCTTGTGTTTCAGCACCCGT
GTTTGAGGAGGTGCTGTACAGAGGCTTTTTGCTGCCAGCCTTAACCTGCT
TTTTGCCCATGTGGGCCGCAATCCCGGCCAGCTCCGTGCTCTTTGCTATC
CATCATCTGAATCCCACCATGATTATTCCACTTTCAATGCTAGGCTTCAT
TTGGGCTAATCTTTACTCGCAGTCTAGAAACCTCACCGTCACCATCTTGA
TTCATGCCATGTGGAACAGCAGAGTTTTCCTGGGCTCTTTGCTTGGTCTT
GGAACATTCACCGATTTTGAGTAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:98351..99724+

>Ggra8779.t1 ID=Ggra8779.t1|Name=Ggra8779.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1374bp|location=Sequence derived from alignment at tig00000860_pilon:98351..99724+ (Gracilaria gracilis GNS1m male)
ATGGCGTTTGACCGCGTCGCCTTTGTTCCCAGCTCGCACGGCGTGCGCTT
CGTGCGCGGCGCGCGGCGCGTCAGCCCGTCGTTTCGGCGCACGTTGTCGT
CGCCGTCGCCGCGTTTGCCCAATGCGCCTGCCGTGCGTCGCGCCTTTCCG
TTGCGCTTCGCCGCGTCTGCCGATCATGCCGCCGCCGACGATGCGTCCAA
GCTGCCGGACGACCCCCTGCAGCCGTTTCAGCCGCCGTCCAATTCGCGCC
AGTCCTCGCCTTCTTCCTCGCTGCAGCCGCAGCCTTCTGCGCCGATTGAG
GAGCGCGCGCAGCCGCACGCCGCGCACAGACCGCAGTGGGCGCCCAAATG
GCTTCCCGACTTTTTTCTCCACCTGCGAACACGCCCTTGGCTGCAGCTCG
CCATCATGCTCCCGCTTTACGCCTTTCATTTGTTCTTCCTCTCCACAAAG
GGCTTCAAGTTTAAGAACCCAATCATCCCCAATAGCAAGAACCTTTTTCA
GAGCATTGGCTACGAATCAATAGCGGGCGCCATTGTCGCCGTCGCCATGT
TGCTGTGGAGAAGATATTGTATGCCTCGACGCCACTCACAACCGCTGCTG
CCAAACATTCTCTCCGTTGAAAACCCCCCTTGGAAAGTCCCGCGCGATGC
AAAACGTCGTATTGGAAGGACCACCGTGCTGCTCATTGTGGCTTACCTCA
TCTCGGGTTACGGAGCAGTGTTCAGTGAGCAGATCTTGTATCTTCTGGCG
GGATCCGGCGTCCCATTAACTGTTGCAACCACGCGTGCGTGGAAGGTATT
GCTGGGTCATCTCATGTGGGTGTATATGGGCATAGGCATCTTGCGTCGAC
TAAAGCCTTTCTTTCCACCAAAAGGCTCGTGGCTGCGATGGAAGTGGCGG
AGTAACTGGTTGTGGTGGGCAATAGGTGGCTACTATGTTAGTGCCCTCTT
CTTCAACATTGCGGACGTTGTCAACCAGCTCGTGTTACCCCCGTCGATGT
TTGAAGAGGAAACAGTCGTAAGCAAGTTGATAAACCCCGAAAACAAAGAC
CGAGTTGCGATGGCAATTGGCTCAATTGGACCTTGTGTTTCAGCACCCGT
GTTTGAGGAGGTGCTGTACAGAGGCTTTTTGCTGCCAGCCTTAACCTGCT
TTTTGCCCATGTGGGCCGCAATCCCGGCCAGCTCCGTGCTCTTTGCTATC
CATCATCTGAATCCCACCATGATTATTCCACTTTCAATGCTAGGCTTCAT
TTGGGCTAATCTTTACTCGCAGTCTAGAAACCTCACCGTCACCATCTTGA
TTCATGCCATGTGGAACAGCAGAGTTTTCCTGGGCTCTTTGCTTGGTCTT
GGAACATTCACCGATTTTGAGTAA
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