Ggra8777.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8777.t1
Unique NameGgra8777.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length218
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:95620..96273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707594.1
Max annot lvl2759|Eukaryota
Evalue5.66e-25
EggNOG OGs2C0DF@1|root,2S6WY@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8777Ggra8777Gracilaria gracilis GNS1m malegenetig00000860_pilon 95620..96273 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8777.t1.start1Ggra8777.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 95620..95622 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8777.t1.CDS1Ggra8777.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 95620..96273 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8777.t1.exon1Ggra8777.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 95620..96273 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8777.t1.stop1Ggra8777.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 96271..96273 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8777.t1Ggra8777.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 95620..96273 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8777.t1 ID=Ggra8777.t1|Name=Ggra8777.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=218bp
MAFITTPLLPAARRPQRNVVTCSTTPPAPPSTVSRRELLSGAAAATAAIL
AAALPSPASAKNGTGLERAFSKVLFPKVGFNAPDALSPSENVVDKSLLDT
KEAKAALSKIKEYEGKFTDLYAKFKQDPQLELTGTVRNAVNISDLRNALN
IVNEAIDEQSQTETDKIVRGIIQDIGELEVAAAVKKGTQRTTKKIERTTD
WFDKVTGDFTKLLAFYS*
back to top

spliced messenger RNA

>Ggra8777.t1 ID=Ggra8777.t1|Name=Ggra8777.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=654bp|location=Sequence derived from alignment at tig00000860_pilon:95620..96273+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTCATCACCACACCATTGCTCCCCGCCGCGCGACGTCCGCAGCG
CAACGTCGTCACATGCAGCACCACCCCACCCGCCCCGCCCAGCACAGTGT
CGCGTCGCGAGCTTCTGTCAGGcgccgccgccgccacggccgccatcctg
gccgccgcgcttccgtcgcccgcctccgcGAAGAATGGCACCGGATTGGA
ACGCGCCTTCAGCAAAGTCTTATTCCCAAAGGTGGGCTTCAACGCGCCGG
ACGCCCTCTCGCCGTCGGAAAACGTCGTCGATAAGTCGTTGCTCGACACC
AAGGAAGCAAAGGCCGCTCTTTCCAAGATCAAGGAGTACGAGGGCAAGTT
CACTGATTTGTACGCAAAGTTTAAACAGGACCCGCAGCTTGAACTTACAG
GCACCGTCAGGAATGCCGTCAACATCTCGGACTTGCGGAATGCTCTTAAC
ATTGTGAATGAAGCCATTGATGAGCAATCACAGACCGAAACGGATAAGAT
TGTGCGCGGTATTATACAGGATATTGGAGAATTGGAGGTCGCGGCTGCTG
TCAAGAAAGGAACTCAGAGAACGACCAAGAAAATTGAGCGAACTACTGAC
TGGTTCGACAAGGTCACCGGAGATTTCACAAAACTGCTCGCGTTCTACTC
GTAG
back to top

protein sequence of Ggra8777.t1

>Ggra8777.t1 ID=Ggra8777.t1|Name=Ggra8777.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=218bp
MAFITTPLLPAARRPQRNVVTCSTTPPAPPSTVSRRELLSGAAAATAAIL
AAALPSPASAKNGTGLERAFSKVLFPKVGFNAPDALSPSENVVDKSLLDT
KEAKAALSKIKEYEGKFTDLYAKFKQDPQLELTGTVRNAVNISDLRNALN
IVNEAIDEQSQTETDKIVRGIIQDIGELEVAAAVKKGTQRTTKKIERTTD
WFDKVTGDFTKLLAFYS*
back to top

mRNA from alignment at tig00000860_pilon:95620..96273+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8777.t1 ID=Ggra8777.t1|Name=Ggra8777.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=654bp|location=Sequence derived from alignment at tig00000860_pilon:95620..96273+ (Gracilaria gracilis GNS1m male)
ATGGCCTTCATCACCACACCATTGCTCCCCGCCGCGCGACGTCCGCAGCG
CAACGTCGTCACATGCAGCACCACCCCACCCGCCCCGCCCAGCACAGTGT
CGCGTCGCGAGCTTCTGTCAGGcgccgccgccgccacggccgccatcctg
gccgccgcgcttccgtcgcccgcctccgcGAAGAATGGCACCGGATTGGA
ACGCGCCTTCAGCAAAGTCTTATTCCCAAAGGTGGGCTTCAACGCGCCGG
ACGCCCTCTCGCCGTCGGAAAACGTCGTCGATAAGTCGTTGCTCGACACC
AAGGAAGCAAAGGCCGCTCTTTCCAAGATCAAGGAGTACGAGGGCAAGTT
CACTGATTTGTACGCAAAGTTTAAACAGGACCCGCAGCTTGAACTTACAG
GCACCGTCAGGAATGCCGTCAACATCTCGGACTTGCGGAATGCTCTTAAC
ATTGTGAATGAAGCCATTGATGAGCAATCACAGACCGAAACGGATAAGAT
TGTGCGCGGTATTATACAGGATATTGGAGAATTGGAGGTCGCGGCTGCTG
TCAAGAAAGGAACTCAGAGAACGACCAAGAAAATTGAGCGAACTACTGAC
TGGTTCGACAAGGTCACCGGAGATTTCACAAAACTGCTCGCGTTCTACTC
GTAG
back to top

Coding sequence (CDS) from alignment at tig00000860_pilon:95620..96273+

>Ggra8777.t1 ID=Ggra8777.t1|Name=Ggra8777.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=654bp|location=Sequence derived from alignment at tig00000860_pilon:95620..96273+ (Gracilaria gracilis GNS1m male)
ATGGCCTTCATCACCACACCATTGCTCCCCGCCGCGCGACGTCCGCAGCG
CAACGTCGTCACATGCAGCACCACCCCACCCGCCCCGCCCAGCACAGTGT
CGCGTCGCGAGCTTCTGTCAGGcgccgccgccgccacggccgccatcctg
gccgccgcgcttccgtcgcccgcctccgcGAAGAATGGCACCGGATTGGA
ACGCGCCTTCAGCAAAGTCTTATTCCCAAAGGTGGGCTTCAACGCGCCGG
ACGCCCTCTCGCCGTCGGAAAACGTCGTCGATAAGTCGTTGCTCGACACC
AAGGAAGCAAAGGCCGCTCTTTCCAAGATCAAGGAGTACGAGGGCAAGTT
CACTGATTTGTACGCAAAGTTTAAACAGGACCCGCAGCTTGAACTTACAG
GCACCGTCAGGAATGCCGTCAACATCTCGGACTTGCGGAATGCTCTTAAC
ATTGTGAATGAAGCCATTGATGAGCAATCACAGACCGAAACGGATAAGAT
TGTGCGCGGTATTATACAGGATATTGGAGAATTGGAGGTCGCGGCTGCTG
TCAAGAAAGGAACTCAGAGAACGACCAAGAAAATTGAGCGAACTACTGAC
TGGTTCGACAAGGTCACCGGAGATTTCACAAAACTGCTCGCGTTCTACTC
GTAG
back to top