Ggra8775.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8775.t1
Unique Name	Ggra8775.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	496

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:90727..92214 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704469.1
Preferred name	SHM2
PFAMs	SHMT
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00022,RC00112,RC01583,RC02958
KEGG ko	ko:K00600,ko:K02974
KEGG Reaction	R00945,R09099
KEGG Pathway	ko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,ko03010,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523,map03010
KEGG Module	M00140,M00141,M00177,M00179,M00346,M00532
GOs	GO:0001505,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003824,GO:0004372,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005759,GO:0005829,GO:0005840,GO:0005886,GO:0005937,GO:0006082,GO:0006520,GO:0006544,GO:0006563,GO:0006730,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0007623,GO:0008150,GO:0008152,GO:0008187,GO:0008219,GO:0008266,GO:0008270,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009266,GO:0009314,GO:0009409,GO:0009416,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009536,GO:0009570,GO:0009579,GO:0009626,GO:0009628,GO:0009853,GO:0009987,GO:0010035,GO:0010038,GO:0010319,GO:0012501,GO:0016020,GO:0016053,GO:0016740,GO:0016741,GO:0016742,GO:0017144,GO:0019752,GO:0019866,GO:0022626,GO:0030427,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0033554,GO:0034050,GO:0042133,GO:0042221,GO:0042995,GO:0043094,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043332,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044455,GO:0044463,GO:0044464,GO:0045087,GO:0045271,GO:0046394,GO:0046686,GO:0046872,GO:0046914,GO:0048046,GO:0048511,GO:0050896,GO:0050897,GO:0051286,GO:0051716,GO:0065007,GO:0065008,GO:0070013,GO:0070469,GO:0071704,GO:0071944,GO:0097159,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:0120025,GO:0120038,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494,GO:1990204,GO:1990904
Evalue	6.68e-238
EggNOG OGs	COG0112@1\|root,KOG2467@2759\|Eukaryota
EC	2.1.2.1
Description	glycine hydroxymethyltransferase activity
COG category	H
BiGG Reaction	iMM904.YBR263W,iND750.YBR263W
BRITE	br01610,ko00000,ko00001,ko00002,ko01000,ko03011

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8775	Ggra8775	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 90727..92214 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8775.t1.start1	Ggra8775.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 90727..90729 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8775.t1.CDS1	Ggra8775.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 90727..92214 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8775.t1.exon1	Ggra8775.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 90727..92214 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8775.t1.stop1	Ggra8775.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 92212..92214 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8775.t1	Ggra8775.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 90727..92214 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:90727..92214+
coding sequence from alignment at tig00000860_pilon:90727..92214+

mRNA sequence

>Ggra8775.t1 ID=Ggra8775.t1|Name=Ggra8775.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=496bp
MLRPTLLRNVSRRFLATPAMSPSAAAPSTLNAPLSEVDPELFDIIEHEKA
RQIKSIQLIPSENFTSRAVLEAVGSVMTNKYSEGYPGARYYGGNEFIDMS
ERLCQKRALEAFRISPDEWGVNVQALSGSPSNLAVYTALLKPHDRILSLD
LPHGGHLSHGFMTDKKRVSATSLFFESMPYRLNESTGLIDYDKLEESAVL
FRPKLIIAGASAYSRHYDYPRMRAIADKVGAYLHADIAHISGLVAAGVVP
SPFEYADVITTTTHKALRGPRGALIFFRKGVRSINKKGEEVMYNLENPIN
SAVFPGLQGGPHNHTIAALAVALKLAQEPEFVAYQQKVLDNSQVLAKGLI
DRGYNLVSGGTDNHLMLVNLRKSDMDGARAERVLELSGIALNKNTVPGDK
SAFNPGGIRMGTHAMTTRGCDTDDFKAIAGYVDRGIAIAAQVKKDLGPDA
KIAAFREAVDNGAGAAEIKALKEEVEEFSLGFEPIGFDRADMVYQ*

spliced messenger RNA

>Ggra8775.t1 ID=Ggra8775.t1|Name=Ggra8775.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1488bp|location=Sequence derived from alignment at tig00000860_pilon:90727..92214+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGCGTCCCACCCTCCTGCGTAACGTTTCTCGCCGTTTTCTGGCCAC
TCCGGCCATGAGTCCGAGTGCGGCCGCGCCATCCACGCTGAATGCGCCGC
TTTCAGAGGTCGACCCGGAATTGTTCGATATCATCGAGCATGAGAAGGCG
CGACAGATCAAATCCATTCAGCTCATTCCCTCGGAAAACTTCACATCTCG
TGCTGTGTTGGAAGCTGTCGGGTCGGTGATGACCAACAAGTATTCAGAGG
GATACCCCGGAGCTCGCTATTACGGAGGCAATGAGTTCATTGATATGAGT
GAGCGCTTGTGTCAGAAGCGCGCCCTTGAGGCCTTCCGCATCTCACCCGA
TGAGTGGGGAGTGAATGTGCAGGCACTATCTGGCAGTCCTTCCAATCTCG
CAGTGTACACAGCGCTTCTCAAGCCGCACGACAGGATTCTCAGTCTTGAT
CTTCCGCACGGTGGCCATCTCAGCCATGGTTTCATGACCGATAAGAAGCG
CGTCAGTGCCACCTCCCTGTTCTTTGAGTCCATGCCCTACAGACTCAATG
AGAGCACTGGCTTGATTGACTACGACAAATTGGAAGAGTCAGCTGTGCTC
TTCAGACCGAAGCTCATAATTGCGGGAGCTAGCGCATATTCCAGACACTA
CGATTATCCGCGCATGCGCGCAATCGCTGACAAGGTCGGCGCATATTTGC
ACGCTGATATCGCTCATATTTCTGGTCTGGTCGCCGCTGGCGTAGTTCCC
TCGCCATTCGAATATGCTGACGTAATCACAACTACCACTCACAAGGCCCT
TCGCGGTCCGAGAGGCGCTTTGATTTTCTTCCGGAAGGGTGTTCGTTCTA
TCAATAAGAAGGGCGAAGAGGTGATGTATAACCTTGAGAACCCCATCAAC
TCTGCTGTGTTCCCAGGGCTGCAAGGAGGACCCCATAATCACACTATTGC
TGCCCTTGCGGTGGCCCTCAAACTGGCCCAGGAACCTGAGTTCGTTGCTT
ATCAACAAAAGGTGTTGGATAATTCGCAAGTGCTCGCCAAGGGGCTCATT
GATAGAGGTTACAACCTGGTTTCAGGCGGAACAGATAACCATCTCATGCT
TGTCAATCTGAGGAAGAGCGATATGGACGGCGCTCGCGCAGAACGCGTTT
TGGAGTTATCTGGTATCGCATTGAACAAGAACACCGTTCCCGGTGACAAG
AGCGCATTCAACCCAGGAGGTATTCGTATGGGTACACATGCTATGACTAC
CAGAGGATGTGACACTGATGACTTCAAGGCTATTGCTGGATACGTGGATC
GTGGAATTGCTATCGCCGCGCAGGTGAAAAAGGATCTGGGACCAGATGCA
AAGATTGCTGCCTTCCGAGAAGCCGTTGACAACGGTGCAGGCGCTGCTGA
AATCAAGGCGTTGAAGGAAGAGGTAGAAGAATTTTCCCTGGGATTTGAGC
CCATTGGCTTCGACCGGGCTGACATGGTCTACCAGTAG

protein sequence of Ggra8775.t1

>Ggra8775.t1 ID=Ggra8775.t1|Name=Ggra8775.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=496bp
MLRPTLLRNVSRRFLATPAMSPSAAAPSTLNAPLSEVDPELFDIIEHEKA
RQIKSIQLIPSENFTSRAVLEAVGSVMTNKYSEGYPGARYYGGNEFIDMS
ERLCQKRALEAFRISPDEWGVNVQALSGSPSNLAVYTALLKPHDRILSLD
LPHGGHLSHGFMTDKKRVSATSLFFESMPYRLNESTGLIDYDKLEESAVL
FRPKLIIAGASAYSRHYDYPRMRAIADKVGAYLHADIAHISGLVAAGVVP
SPFEYADVITTTTHKALRGPRGALIFFRKGVRSINKKGEEVMYNLENPIN
SAVFPGLQGGPHNHTIAALAVALKLAQEPEFVAYQQKVLDNSQVLAKGLI
DRGYNLVSGGTDNHLMLVNLRKSDMDGARAERVLELSGIALNKNTVPGDK
SAFNPGGIRMGTHAMTTRGCDTDDFKAIAGYVDRGIAIAAQVKKDLGPDA
KIAAFREAVDNGAGAAEIKALKEEVEEFSLGFEPIGFDRADMVYQ*

mRNA from alignment at tig00000860_pilon:90727..92214+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8775.t1 ID=Ggra8775.t1|Name=Ggra8775.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1488bp|location=Sequence derived from alignment at tig00000860_pilon:90727..92214+ (Gracilaria gracilis GNS1m male)
ATGTTGCGTCCCACCCTCCTGCGTAACGTTTCTCGCCGTTTTCTGGCCAC
TCCGGCCATGAGTCCGAGTGCGGCCGCGCCATCCACGCTGAATGCGCCGC
TTTCAGAGGTCGACCCGGAATTGTTCGATATCATCGAGCATGAGAAGGCG
CGACAGATCAAATCCATTCAGCTCATTCCCTCGGAAAACTTCACATCTCG
TGCTGTGTTGGAAGCTGTCGGGTCGGTGATGACCAACAAGTATTCAGAGG
GATACCCCGGAGCTCGCTATTACGGAGGCAATGAGTTCATTGATATGAGT
GAGCGCTTGTGTCAGAAGCGCGCCCTTGAGGCCTTCCGCATCTCACCCGA
TGAGTGGGGAGTGAATGTGCAGGCACTATCTGGCAGTCCTTCCAATCTCG
CAGTGTACACAGCGCTTCTCAAGCCGCACGACAGGATTCTCAGTCTTGAT
CTTCCGCACGGTGGCCATCTCAGCCATGGTTTCATGACCGATAAGAAGCG
CGTCAGTGCCACCTCCCTGTTCTTTGAGTCCATGCCCTACAGACTCAATG
AGAGCACTGGCTTGATTGACTACGACAAATTGGAAGAGTCAGCTGTGCTC
TTCAGACCGAAGCTCATAATTGCGGGAGCTAGCGCATATTCCAGACACTA
CGATTATCCGCGCATGCGCGCAATCGCTGACAAGGTCGGCGCATATTTGC
ACGCTGATATCGCTCATATTTCTGGTCTGGTCGCCGCTGGCGTAGTTCCC
TCGCCATTCGAATATGCTGACGTAATCACAACTACCACTCACAAGGCCCT
TCGCGGTCCGAGAGGCGCTTTGATTTTCTTCCGGAAGGGTGTTCGTTCTA
TCAATAAGAAGGGCGAAGAGGTGATGTATAACCTTGAGAACCCCATCAAC
TCTGCTGTGTTCCCAGGGCTGCAAGGAGGACCCCATAATCACACTATTGC
TGCCCTTGCGGTGGCCCTCAAACTGGCCCAGGAACCTGAGTTCGTTGCTT
ATCAACAAAAGGTGTTGGATAATTCGCAAGTGCTCGCCAAGGGGCTCATT
GATAGAGGTTACAACCTGGTTTCAGGCGGAACAGATAACCATCTCATGCT
TGTCAATCTGAGGAAGAGCGATATGGACGGCGCTCGCGCAGAACGCGTTT
TGGAGTTATCTGGTATCGCATTGAACAAGAACACCGTTCCCGGTGACAAG
AGCGCATTCAACCCAGGAGGTATTCGTATGGGTACACATGCTATGACTAC
CAGAGGATGTGACACTGATGACTTCAAGGCTATTGCTGGATACGTGGATC
GTGGAATTGCTATCGCCGCGCAGGTGAAAAAGGATCTGGGACCAGATGCA
AAGATTGCTGCCTTCCGAGAAGCCGTTGACAACGGTGCAGGCGCTGCTGA
AATCAAGGCGTTGAAGGAAGAGGTAGAAGAATTTTCCCTGGGATTTGAGC
CCATTGGCTTCGACCGGGCTGACATGGTCTACCAGTAG

Coding sequence (CDS) from alignment at tig00000860_pilon:90727..92214+

>Ggra8775.t1 ID=Ggra8775.t1|Name=Ggra8775.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1488bp|location=Sequence derived from alignment at tig00000860_pilon:90727..92214+ (Gracilaria gracilis GNS1m male)
ATGTTGCGTCCCACCCTCCTGCGTAACGTTTCTCGCCGTTTTCTGGCCAC
TCCGGCCATGAGTCCGAGTGCGGCCGCGCCATCCACGCTGAATGCGCCGC
TTTCAGAGGTCGACCCGGAATTGTTCGATATCATCGAGCATGAGAAGGCG
CGACAGATCAAATCCATTCAGCTCATTCCCTCGGAAAACTTCACATCTCG
TGCTGTGTTGGAAGCTGTCGGGTCGGTGATGACCAACAAGTATTCAGAGG
GATACCCCGGAGCTCGCTATTACGGAGGCAATGAGTTCATTGATATGAGT
GAGCGCTTGTGTCAGAAGCGCGCCCTTGAGGCCTTCCGCATCTCACCCGA
TGAGTGGGGAGTGAATGTGCAGGCACTATCTGGCAGTCCTTCCAATCTCG
CAGTGTACACAGCGCTTCTCAAGCCGCACGACAGGATTCTCAGTCTTGAT
CTTCCGCACGGTGGCCATCTCAGCCATGGTTTCATGACCGATAAGAAGCG
CGTCAGTGCCACCTCCCTGTTCTTTGAGTCCATGCCCTACAGACTCAATG
AGAGCACTGGCTTGATTGACTACGACAAATTGGAAGAGTCAGCTGTGCTC
TTCAGACCGAAGCTCATAATTGCGGGAGCTAGCGCATATTCCAGACACTA
CGATTATCCGCGCATGCGCGCAATCGCTGACAAGGTCGGCGCATATTTGC
ACGCTGATATCGCTCATATTTCTGGTCTGGTCGCCGCTGGCGTAGTTCCC
TCGCCATTCGAATATGCTGACGTAATCACAACTACCACTCACAAGGCCCT
TCGCGGTCCGAGAGGCGCTTTGATTTTCTTCCGGAAGGGTGTTCGTTCTA
TCAATAAGAAGGGCGAAGAGGTGATGTATAACCTTGAGAACCCCATCAAC
TCTGCTGTGTTCCCAGGGCTGCAAGGAGGACCCCATAATCACACTATTGC
TGCCCTTGCGGTGGCCCTCAAACTGGCCCAGGAACCTGAGTTCGTTGCTT
ATCAACAAAAGGTGTTGGATAATTCGCAAGTGCTCGCCAAGGGGCTCATT
GATAGAGGTTACAACCTGGTTTCAGGCGGAACAGATAACCATCTCATGCT
TGTCAATCTGAGGAAGAGCGATATGGACGGCGCTCGCGCAGAACGCGTTT
TGGAGTTATCTGGTATCGCATTGAACAAGAACACCGTTCCCGGTGACAAG
AGCGCATTCAACCCAGGAGGTATTCGTATGGGTACACATGCTATGACTAC
CAGAGGATGTGACACTGATGACTTCAAGGCTATTGCTGGATACGTGGATC
GTGGAATTGCTATCGCCGCGCAGGTGAAAAAGGATCTGGGACCAGATGCA
AAGATTGCTGCCTTCCGAGAAGCCGTTGACAACGGTGCAGGCGCTGCTGA
AATCAAGGCGTTGAAGGAAGAGGTAGAAGAATTTTCCCTGGGATTTGAGC
CCATTGGCTTCGACCGGGCTGACATGGTCTACCAGTAG