Ggra8773.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8773.t1
Unique NameGgra8773.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length388
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:86165..87328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42099.EPrPV00000014105
PFAMsNAD_Gly3P_dh_C,NAD_Gly3P_dh_N
Max annot lvl121069|Pythiales
Evalue1.1e-127
EggNOG OGsCOG0240@1|root,KOG2711@2759|Eukaryota,1MCQJ@121069|Pythiales
DescriptionGlycerol-3-phosphate dehydrogenase. Source PGD
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8773Ggra8773Gracilaria gracilis GNS1m malegenetig00000860_pilon 86165..87328 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8773.t1.stop1Ggra8773.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 86165..86167 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8773.t1.CDS1Ggra8773.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 86165..87328 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8773.t1.exon1Ggra8773.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 86165..87328 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8773.t1.start1Ggra8773.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 87326..87328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8773.t1Ggra8773.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 86165..87328 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8773.t1 ID=Ggra8773.t1|Name=Ggra8773.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=388bp
MPPIVIRTEPGARSLATPPPTHSRQDSADELLPMKKICIVGAGNWGSAAA
IIIANNVKNFDYYHDTINMWVFEEMIEGNKLTEIINETHYNVKYLPEHRL
PDNIVAVPDLLDAANDCNVFVFVLPHQFLPRACKTLKGHIAPDSIGISLI
KGIDFNDNGVVLMTDIITKELSIDVSVLSGANIANEIAAGKFCESTIGYS
NADNAIVFFELFNNRNFRISLIKDVQSVQVFGALKNVIALGAGFCDALDM
GNNTKAALIRIGLLEMHRFASKYFAPIHDATMVESCGLADLITTCMGGRN
RRVSEAFARARGKRSWEELEDEMLKGQKLQGTSTVLEVMKILQRDECVQQ
FPFIKLIYQIAYDGADIETIVDFPDEHASDALDDLDE*
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spliced messenger RNA

>Ggra8773.t1 ID=Ggra8773.t1|Name=Ggra8773.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1164bp|location=Sequence derived from alignment at tig00000860_pilon:86165..87328- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCAATTGTAATTCGTACCGAGCCTGGTGCGCGCTCCCTTGCCAC
CCCTCCGCCAACTCATTCTCGTCAGGATTCTGCTGATGAGCTTCTTCCTA
TGAAGAAAATATGTATCGTAGGTGCCGGAAACTGGGGAAGTGCTGCTGCC
ATAATCATCGCCAATAACGTCAAGAACTTTGACTATTACCATGATACCAT
CAACATGTGGGTCTTCGAGGAAATGATTGAGGGCAACAAGTTAACCGAAA
TCATCAACGAAACTCATTACAACGTCAAGTATCTGCCGGAACATCGCCTA
CCTGACAATATCGTTGCCGTTCCCGACTTACTCGACGCTGCCAATGATTG
TAACGTCTTTGTTTTTGTGCTTCCACATCAGTTTTTACCTCGCGCCTGCA
AGACCCTTAAGGGACACATCGCCCCAGACTCCATTGGTATTTCGCTCATC
AAGGGCATCGACTTTAACGACAATGGCGTCGTTCTCATGACAGACATCAT
CACCAAAGAGCTTTCCATCGATGTTTCTGTTCTCAGCGGTGCTAACATTG
CCAATGAAATCGCCGCGGGAAAGTTCTGCGAGTCCACGATTGGCTACAGT
AATGCTGACAACGCCATTGTGTTCTTTGAGCTGTTCAATAACCGCAACTT
CCGTATCAGTCTCATCAAGGATGTGCAGTCCGTGCAGGTGTTTGGTGCGC
TCAAGAACGTCATTGCTCTTGGCGCTGGTTTCTGTGATGCGTTGGACATG
GGAAACAACACCAAAGCAGCCTTGATTCGAATTGGATTGCTCGAAATGCA
CCGCTTCGCCAGCAAATACTTTGCGCCTATTCATGATGCCACAATGGTGG
AATCGTGCGGCCTGGCAGACCTGATCACAACGTGCATGGGCGGTCGCAAT
CGACGTGTGTCGGAAGCTTTTGCTAGAGCTCGCGGAAAACGCTCGTGGGA
AGAACTGGAAGACGAAATGCTCAAAGGACAGAAACTGCAGGGCACCAGCA
CAGTGCTGGAGGTGATGAAAATCCTCCAACGTGATGAATGCGTGCAACAG
TTTCCTTTCATTAAGCTCATTTACCAAATTGCTTATGACGGCGCAGATAT
TGAGACAATTGTGGACTTCCCCGACGAGCATGCGTCCGATGCATTGGATG
ATCTTGATGAGTAA
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protein sequence of Ggra8773.t1

>Ggra8773.t1 ID=Ggra8773.t1|Name=Ggra8773.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=388bp
MPPIVIRTEPGARSLATPPPTHSRQDSADELLPMKKICIVGAGNWGSAAA
IIIANNVKNFDYYHDTINMWVFEEMIEGNKLTEIINETHYNVKYLPEHRL
PDNIVAVPDLLDAANDCNVFVFVLPHQFLPRACKTLKGHIAPDSIGISLI
KGIDFNDNGVVLMTDIITKELSIDVSVLSGANIANEIAAGKFCESTIGYS
NADNAIVFFELFNNRNFRISLIKDVQSVQVFGALKNVIALGAGFCDALDM
GNNTKAALIRIGLLEMHRFASKYFAPIHDATMVESCGLADLITTCMGGRN
RRVSEAFARARGKRSWEELEDEMLKGQKLQGTSTVLEVMKILQRDECVQQ
FPFIKLIYQIAYDGADIETIVDFPDEHASDALDDLDE*
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mRNA from alignment at tig00000860_pilon:86165..87328-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8773.t1 ID=Ggra8773.t1|Name=Ggra8773.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1164bp|location=Sequence derived from alignment at tig00000860_pilon:86165..87328- (Gracilaria gracilis GNS1m male)
ATGCCGCCAATTGTAATTCGTACCGAGCCTGGTGCGCGCTCCCTTGCCAC
CCCTCCGCCAACTCATTCTCGTCAGGATTCTGCTGATGAGCTTCTTCCTA
TGAAGAAAATATGTATCGTAGGTGCCGGAAACTGGGGAAGTGCTGCTGCC
ATAATCATCGCCAATAACGTCAAGAACTTTGACTATTACCATGATACCAT
CAACATGTGGGTCTTCGAGGAAATGATTGAGGGCAACAAGTTAACCGAAA
TCATCAACGAAACTCATTACAACGTCAAGTATCTGCCGGAACATCGCCTA
CCTGACAATATCGTTGCCGTTCCCGACTTACTCGACGCTGCCAATGATTG
TAACGTCTTTGTTTTTGTGCTTCCACATCAGTTTTTACCTCGCGCCTGCA
AGACCCTTAAGGGACACATCGCCCCAGACTCCATTGGTATTTCGCTCATC
AAGGGCATCGACTTTAACGACAATGGCGTCGTTCTCATGACAGACATCAT
CACCAAAGAGCTTTCCATCGATGTTTCTGTTCTCAGCGGTGCTAACATTG
CCAATGAAATCGCCGCGGGAAAGTTCTGCGAGTCCACGATTGGCTACAGT
AATGCTGACAACGCCATTGTGTTCTTTGAGCTGTTCAATAACCGCAACTT
CCGTATCAGTCTCATCAAGGATGTGCAGTCCGTGCAGGTGTTTGGTGCGC
TCAAGAACGTCATTGCTCTTGGCGCTGGTTTCTGTGATGCGTTGGACATG
GGAAACAACACCAAAGCAGCCTTGATTCGAATTGGATTGCTCGAAATGCA
CCGCTTCGCCAGCAAATACTTTGCGCCTATTCATGATGCCACAATGGTGG
AATCGTGCGGCCTGGCAGACCTGATCACAACGTGCATGGGCGGTCGCAAT
CGACGTGTGTCGGAAGCTTTTGCTAGAGCTCGCGGAAAACGCTCGTGGGA
AGAACTGGAAGACGAAATGCTCAAAGGACAGAAACTGCAGGGCACCAGCA
CAGTGCTGGAGGTGATGAAAATCCTCCAACGTGATGAATGCGTGCAACAG
TTTCCTTTCATTAAGCTCATTTACCAAATTGCTTATGACGGCGCAGATAT
TGAGACAATTGTGGACTTCCCCGACGAGCATGCGTCCGATGCATTGGATG
ATCTTGATGAGTAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:86165..87328-

>Ggra8773.t1 ID=Ggra8773.t1|Name=Ggra8773.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1164bp|location=Sequence derived from alignment at tig00000860_pilon:86165..87328- (Gracilaria gracilis GNS1m male)
ATGCCGCCAATTGTAATTCGTACCGAGCCTGGTGCGCGCTCCCTTGCCAC
CCCTCCGCCAACTCATTCTCGTCAGGATTCTGCTGATGAGCTTCTTCCTA
TGAAGAAAATATGTATCGTAGGTGCCGGAAACTGGGGAAGTGCTGCTGCC
ATAATCATCGCCAATAACGTCAAGAACTTTGACTATTACCATGATACCAT
CAACATGTGGGTCTTCGAGGAAATGATTGAGGGCAACAAGTTAACCGAAA
TCATCAACGAAACTCATTACAACGTCAAGTATCTGCCGGAACATCGCCTA
CCTGACAATATCGTTGCCGTTCCCGACTTACTCGACGCTGCCAATGATTG
TAACGTCTTTGTTTTTGTGCTTCCACATCAGTTTTTACCTCGCGCCTGCA
AGACCCTTAAGGGACACATCGCCCCAGACTCCATTGGTATTTCGCTCATC
AAGGGCATCGACTTTAACGACAATGGCGTCGTTCTCATGACAGACATCAT
CACCAAAGAGCTTTCCATCGATGTTTCTGTTCTCAGCGGTGCTAACATTG
CCAATGAAATCGCCGCGGGAAAGTTCTGCGAGTCCACGATTGGCTACAGT
AATGCTGACAACGCCATTGTGTTCTTTGAGCTGTTCAATAACCGCAACTT
CCGTATCAGTCTCATCAAGGATGTGCAGTCCGTGCAGGTGTTTGGTGCGC
TCAAGAACGTCATTGCTCTTGGCGCTGGTTTCTGTGATGCGTTGGACATG
GGAAACAACACCAAAGCAGCCTTGATTCGAATTGGATTGCTCGAAATGCA
CCGCTTCGCCAGCAAATACTTTGCGCCTATTCATGATGCCACAATGGTGG
AATCGTGCGGCCTGGCAGACCTGATCACAACGTGCATGGGCGGTCGCAAT
CGACGTGTGTCGGAAGCTTTTGCTAGAGCTCGCGGAAAACGCTCGTGGGA
AGAACTGGAAGACGAAATGCTCAAAGGACAGAAACTGCAGGGCACCAGCA
CAGTGCTGGAGGTGATGAAAATCCTCCAACGTGATGAATGCGTGCAACAG
TTTCCTTTCATTAAGCTCATTTACCAAATTGCTTATGACGGCGCAGATAT
TGAGACAATTGTGGACTTCCCCGACGAGCATGCGTCCGATGCATTGGATG
ATCTTGATGAGTAA
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