Ggra8772.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8772.t1
Unique Name	Ggra8772.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	754

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:83319..85580 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708884.1
PFAMs	Na_H_Exchanger,TrkA_N
Max annot lvl	2759\|Eukaryota
Evalue	1.77e-231
EggNOG OGs	COG0475@1\|root,KOG1650@2759\|Eukaryota
Description	solute:proton antiporter activity
COG category	P

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8772	Ggra8772	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 83319..85580 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8772.t1.start1	Ggra8772.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 83319..83321 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8772.t1.CDS1	Ggra8772.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 83319..85580 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8772.t1.exon1	Ggra8772.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 83319..85580 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8772.t1.stop1	Ggra8772.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 85578..85580 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8772.t1	Ggra8772.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 83319..85580 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:83319..85580+
coding sequence from alignment at tig00000860_pilon:83319..85580+

mRNA sequence

>Ggra8772.t1 ID=Ggra8772.t1|Name=Ggra8772.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=754bp
MRPAPLRALREHELPPLAHGTATLTASASRRVVVADAIAVTPAPEKRADE
RDVSSTPSTLNLSLLKTLPARIERLRLSLLSFVQHSEDSHQHAVNDALVL
LIATVIIIPLARRLGISPILGFLAAGVALGPNGFALVNDVRTTKALAELG
VVFFLFEMGLELSTSKLNSLRADVFGLGTAQFFITGAIITASAIAAGITS
QAAIIVGAALALSSSAFVLQLLSERGEVGTRFGRAAFGILLFQDLVVVPV
LVLIPLLAGSGAPAAVWRAVSVASVKAVLALAFIIFMGNNALQPIFRFVA
RARSPEAFIAVILLTVLGTSSLTQMLGLSDTLGAFLAGVMLAETKFRHQV
EADIKPFRGILLGLFFMTVGFSIDLNLAWANMSKVVSLVSGLLAIKASVI
AAAGVAFGLSVGSALRTGLLLSQGGEFAFVIFGLGLSVGVLPADLSQLLL
LVVAISMAVTPLLAAIGRQISSQLEKKRGLIGVRMEDADTADARDFVMVA
GWGRVGQSVCEMLDAKLVRYMAFDMSPTRVIDARNKGLPVFFGDASRPEV
LRAAGVERARALVVTLDDPEQALRAVQNIRREFEGVKVFCRARDAKHQKL
LQAAGATAIVPELLEASLLLGGAVLLDYGTPMDEVNSLVEEARSENLAEI
GVADNVTATIGSAFKESRSRTIHEQEQKPTEPVVEEDDESEEPELVPLES
DVKSEDIPLASTSTDNTEDIYEPAEQVNGPADDGVVQGKKAAVVEDLESD
SVR*

spliced messenger RNA

>Ggra8772.t1 ID=Ggra8772.t1|Name=Ggra8772.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2262bp|location=Sequence derived from alignment at tig00000860_pilon:83319..85580+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGCCCGCGCCGCTGCGCGCGCTGCGCGAGCATGAGCTGCCGCCGCT
CGCGCACGGCACCGCCACGCTTACGGCCAGCGCGTCGCGGCGCGTGGTGG
TGGCGGATGCCATCGCCGTCACGCCGGCGCCCGAGAAGCGCGCCGATGAG
CGCGACGTCTCTTCGACGCCGTCCACGCTCAATCTGTCGCTGTTGAAGAC
GTTGCCGGCGCGCATTGAACGCCTGCGATTGTCGCTGCTGTCGTTCGTAC
AGCACTCGGAAGACTCGCATCAACACGCCGTCAACGACGCGCTCGTGCTG
CTCATTGCCACCGTCATCATCATCCCGCTCGCGAGGCGCTTGGGCATCTC
GCCCATTCTGGGCTTTTTGGCCGCTGGCGTCGCGCTGGGGCCGAATGGCT
TCGCGCTTGTCAATGACGTGCGCACCACAAAGGCGCTTGCCGAGCTGGGC
GTCGTCTTCTTTCTGTTCGAGATGGGGCTGGAGCTTTCAACGTCCAAGCT
CAACTCGCTGCGCGCCGATGTGTTTGGCTTAGGCACCGCGCAGTTCTTCA
TCACGGGCGCCATCATCACCGCGTCTGCCATTGCGGCGGGTATCACGTCG
CAGGCTGCCATTATCGTTGGCGCCGCGCTTGCGCTCAGTTCGAGCGCCTT
TGTGCTGCAGCTTCTGTCGGAGCGCGGCGAAGTTGGTACCCGTTTCGGCC
GCGCCGCCTTTGGAATCCTGCTCTTTCAAGACCTGGTGGTCGTGCCGGTG
CTCGTGCTTATTCCTTTGCTTGCCGGCTCGGGCGCGCCGGCCGCTGTGTG
GCGCGCCGTAAGTGTGGCTAGTGTCAAGGCCGTGTTGGCGCTGGCTTTCA
TCATCTTCATGGGTAATAACGCCTTGCAGCCCATCTTTCGCTTTGTGGCG
CGCGCTAGAAGTCCGGAAGCATTCATTGCCGTCATCCTGCTCACCGTGTT
GGGCACGTCCTCTCTCACGCAGATGCTCGGATTGAGCGACACTCTAGGAG
CCTTTTTGGCCGGTGTTATGCTGGCGGAGACCAAGTTTAGGCATCAGGTG
GAGGCTGATATCAAGCCCTTCCGAGGTATTTTGCTTGGTTTGTTCTTCAT
GACGGTTGGCTTTTCAATTGATCTCAATCTCGCATGGGCCAATATGAGCA
AGGTGGTGTCCCTAGTATCTGGCCTGTTGGCCATTAAGGCCAGTGTTATT
GCTGCTGCCGGTGTTGCTTTTGGACTAAGTGTCGGATCTGCTCTACGAAC
CGGGCTGCTTCTCTCTCAGGGAGGCGAGTTTGCCTTTGTCATCTTTGGCC
TTGGACTATCGGTTGGTGTGTTGCCTGCCGATCTCAGTCAGTTATTGCTG
CTTGTAGTGGCCATCTCTATGGCTGTAACGCCGCTCTTGGCTGCCATCGG
GCGACAAATATCATCCCAGTTGGAGAAGAAGAGGGGCCTCATCGGTGTGC
GCATGGAAGATGCGGACACCGCTGATGCTCGCGATTTTGTCATGGTAGCC
GGCTGGGGCCGCGTCGGCCAGTCTGTTTGTGAAATGCTCGATGCCAAGCT
TGTGAGGTACATGGCGTTCGACATGTCTCCCACACGAGTCATTGACGCGC
GTAATAAGGGCCTGCCGGTATTCTTTGGCGATGCTTCCCGTCCTGAGGTG
TTGCGCGCAGCTGGCGTTGAAAGAGCCCGTGCTCTTGTTGTCACGCTCGA
TGACCCAGAACAGGCGCTGAGAGCCGTTCAGAACATTCGCAGAGAATTTG
AAGGAGTCAAGGTGTTCTGCCGCGCTCGAGATGCGAAACATCAGAAACTG
TTGCAGGCTGCTGGGGCTACCGCTATCGTACCTGAGCTACTGGAGGCCTC
GCTCCTTCTAGGTGGCGCTGTTCTCCTGGACTATGGAACGCCCATGGATG
AAGTTAATTCTTTAGTGGAGGAGGCAAGATCAGAGAACCTCGCAGAGATT
GGAGTGGCTGATAACGTAACTGCCACCATTGGTTCAGCGTTCAAGGAGTC
GAGATCACGAACAATTCATGAACAAGAACAAAAGCCCACAGAGCCTGTTG
TGGAGGAAGATGATGAGAGCGAAGAACCTGAGCTTGTTCCCCTTGAATCT
GATGTTAAGAGTGAGGATATCCCGCTCGCTTCGACTAGTACTGACAACAC
TGAGGACATCTATGAGCCTGCAGAGCAAGTGAACGGGCCAGCAGATGATG
GTGTGGTTCAAGGAAAGAAAGCTGCCGTTGTGGAAGATCTAGAATCAGAT
TCAGTAAGGTAA

protein sequence of Ggra8772.t1

>Ggra8772.t1 ID=Ggra8772.t1|Name=Ggra8772.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=754bp
MRPAPLRALREHELPPLAHGTATLTASASRRVVVADAIAVTPAPEKRADE
RDVSSTPSTLNLSLLKTLPARIERLRLSLLSFVQHSEDSHQHAVNDALVL
LIATVIIIPLARRLGISPILGFLAAGVALGPNGFALVNDVRTTKALAELG
VVFFLFEMGLELSTSKLNSLRADVFGLGTAQFFITGAIITASAIAAGITS
QAAIIVGAALALSSSAFVLQLLSERGEVGTRFGRAAFGILLFQDLVVVPV
LVLIPLLAGSGAPAAVWRAVSVASVKAVLALAFIIFMGNNALQPIFRFVA
RARSPEAFIAVILLTVLGTSSLTQMLGLSDTLGAFLAGVMLAETKFRHQV
EADIKPFRGILLGLFFMTVGFSIDLNLAWANMSKVVSLVSGLLAIKASVI
AAAGVAFGLSVGSALRTGLLLSQGGEFAFVIFGLGLSVGVLPADLSQLLL
LVVAISMAVTPLLAAIGRQISSQLEKKRGLIGVRMEDADTADARDFVMVA
GWGRVGQSVCEMLDAKLVRYMAFDMSPTRVIDARNKGLPVFFGDASRPEV
LRAAGVERARALVVTLDDPEQALRAVQNIRREFEGVKVFCRARDAKHQKL
LQAAGATAIVPELLEASLLLGGAVLLDYGTPMDEVNSLVEEARSENLAEI
GVADNVTATIGSAFKESRSRTIHEQEQKPTEPVVEEDDESEEPELVPLES
DVKSEDIPLASTSTDNTEDIYEPAEQVNGPADDGVVQGKKAAVVEDLESD
SVR*

mRNA from alignment at tig00000860_pilon:83319..85580+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8772.t1 ID=Ggra8772.t1|Name=Ggra8772.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2262bp|location=Sequence derived from alignment at tig00000860_pilon:83319..85580+ (Gracilaria gracilis GNS1m male)
ATGCGGCCCGCGCCGCTGCGCGCGCTGCGCGAGCATGAGCTGCCGCCGCT
CGCGCACGGCACCGCCACGCTTACGGCCAGCGCGTCGCGGCGCGTGGTGG
TGGCGGATGCCATCGCCGTCACGCCGGCGCCCGAGAAGCGCGCCGATGAG
CGCGACGTCTCTTCGACGCCGTCCACGCTCAATCTGTCGCTGTTGAAGAC
GTTGCCGGCGCGCATTGAACGCCTGCGATTGTCGCTGCTGTCGTTCGTAC
AGCACTCGGAAGACTCGCATCAACACGCCGTCAACGACGCGCTCGTGCTG
CTCATTGCCACCGTCATCATCATCCCGCTCGCGAGGCGCTTGGGCATCTC
GCCCATTCTGGGCTTTTTGGCCGCTGGCGTCGCGCTGGGGCCGAATGGCT
TCGCGCTTGTCAATGACGTGCGCACCACAAAGGCGCTTGCCGAGCTGGGC
GTCGTCTTCTTTCTGTTCGAGATGGGGCTGGAGCTTTCAACGTCCAAGCT
CAACTCGCTGCGCGCCGATGTGTTTGGCTTAGGCACCGCGCAGTTCTTCA
TCACGGGCGCCATCATCACCGCGTCTGCCATTGCGGCGGGTATCACGTCG
CAGGCTGCCATTATCGTTGGCGCCGCGCTTGCGCTCAGTTCGAGCGCCTT
TGTGCTGCAGCTTCTGTCGGAGCGCGGCGAAGTTGGTACCCGTTTCGGCC
GCGCCGCCTTTGGAATCCTGCTCTTTCAAGACCTGGTGGTCGTGCCGGTG
CTCGTGCTTATTCCTTTGCTTGCCGGCTCGGGCGCGCCGGCCGCTGTGTG
GCGCGCCGTAAGTGTGGCTAGTGTCAAGGCCGTGTTGGCGCTGGCTTTCA
TCATCTTCATGGGTAATAACGCCTTGCAGCCCATCTTTCGCTTTGTGGCG
CGCGCTAGAAGTCCGGAAGCATTCATTGCCGTCATCCTGCTCACCGTGTT
GGGCACGTCCTCTCTCACGCAGATGCTCGGATTGAGCGACACTCTAGGAG
CCTTTTTGGCCGGTGTTATGCTGGCGGAGACCAAGTTTAGGCATCAGGTG
GAGGCTGATATCAAGCCCTTCCGAGGTATTTTGCTTGGTTTGTTCTTCAT
GACGGTTGGCTTTTCAATTGATCTCAATCTCGCATGGGCCAATATGAGCA
AGGTGGTGTCCCTAGTATCTGGCCTGTTGGCCATTAAGGCCAGTGTTATT
GCTGCTGCCGGTGTTGCTTTTGGACTAAGTGTCGGATCTGCTCTACGAAC
CGGGCTGCTTCTCTCTCAGGGAGGCGAGTTTGCCTTTGTCATCTTTGGCC
TTGGACTATCGGTTGGTGTGTTGCCTGCCGATCTCAGTCAGTTATTGCTG
CTTGTAGTGGCCATCTCTATGGCTGTAACGCCGCTCTTGGCTGCCATCGG
GCGACAAATATCATCCCAGTTGGAGAAGAAGAGGGGCCTCATCGGTGTGC
GCATGGAAGATGCGGACACCGCTGATGCTCGCGATTTTGTCATGGTAGCC
GGCTGGGGCCGCGTCGGCCAGTCTGTTTGTGAAATGCTCGATGCCAAGCT
TGTGAGGTACATGGCGTTCGACATGTCTCCCACACGAGTCATTGACGCGC
GTAATAAGGGCCTGCCGGTATTCTTTGGCGATGCTTCCCGTCCTGAGGTG
TTGCGCGCAGCTGGCGTTGAAAGAGCCCGTGCTCTTGTTGTCACGCTCGA
TGACCCAGAACAGGCGCTGAGAGCCGTTCAGAACATTCGCAGAGAATTTG
AAGGAGTCAAGGTGTTCTGCCGCGCTCGAGATGCGAAACATCAGAAACTG
TTGCAGGCTGCTGGGGCTACCGCTATCGTACCTGAGCTACTGGAGGCCTC
GCTCCTTCTAGGTGGCGCTGTTCTCCTGGACTATGGAACGCCCATGGATG
AAGTTAATTCTTTAGTGGAGGAGGCAAGATCAGAGAACCTCGCAGAGATT
GGAGTGGCTGATAACGTAACTGCCACCATTGGTTCAGCGTTCAAGGAGTC
GAGATCACGAACAATTCATGAACAAGAACAAAAGCCCACAGAGCCTGTTG
TGGAGGAAGATGATGAGAGCGAAGAACCTGAGCTTGTTCCCCTTGAATCT
GATGTTAAGAGTGAGGATATCCCGCTCGCTTCGACTAGTACTGACAACAC
TGAGGACATCTATGAGCCTGCAGAGCAAGTGAACGGGCCAGCAGATGATG
GTGTGGTTCAAGGAAAGAAAGCTGCCGTTGTGGAAGATCTAGAATCAGAT
TCAGTAAGGTAA

Coding sequence (CDS) from alignment at tig00000860_pilon:83319..85580+

>Ggra8772.t1 ID=Ggra8772.t1|Name=Ggra8772.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2262bp|location=Sequence derived from alignment at tig00000860_pilon:83319..85580+ (Gracilaria gracilis GNS1m male)
ATGCGGCCCGCGCCGCTGCGCGCGCTGCGCGAGCATGAGCTGCCGCCGCT
CGCGCACGGCACCGCCACGCTTACGGCCAGCGCGTCGCGGCGCGTGGTGG
TGGCGGATGCCATCGCCGTCACGCCGGCGCCCGAGAAGCGCGCCGATGAG
CGCGACGTCTCTTCGACGCCGTCCACGCTCAATCTGTCGCTGTTGAAGAC
GTTGCCGGCGCGCATTGAACGCCTGCGATTGTCGCTGCTGTCGTTCGTAC
AGCACTCGGAAGACTCGCATCAACACGCCGTCAACGACGCGCTCGTGCTG
CTCATTGCCACCGTCATCATCATCCCGCTCGCGAGGCGCTTGGGCATCTC
GCCCATTCTGGGCTTTTTGGCCGCTGGCGTCGCGCTGGGGCCGAATGGCT
TCGCGCTTGTCAATGACGTGCGCACCACAAAGGCGCTTGCCGAGCTGGGC
GTCGTCTTCTTTCTGTTCGAGATGGGGCTGGAGCTTTCAACGTCCAAGCT
CAACTCGCTGCGCGCCGATGTGTTTGGCTTAGGCACCGCGCAGTTCTTCA
TCACGGGCGCCATCATCACCGCGTCTGCCATTGCGGCGGGTATCACGTCG
CAGGCTGCCATTATCGTTGGCGCCGCGCTTGCGCTCAGTTCGAGCGCCTT
TGTGCTGCAGCTTCTGTCGGAGCGCGGCGAAGTTGGTACCCGTTTCGGCC
GCGCCGCCTTTGGAATCCTGCTCTTTCAAGACCTGGTGGTCGTGCCGGTG
CTCGTGCTTATTCCTTTGCTTGCCGGCTCGGGCGCGCCGGCCGCTGTGTG
GCGCGCCGTAAGTGTGGCTAGTGTCAAGGCCGTGTTGGCGCTGGCTTTCA
TCATCTTCATGGGTAATAACGCCTTGCAGCCCATCTTTCGCTTTGTGGCG
CGCGCTAGAAGTCCGGAAGCATTCATTGCCGTCATCCTGCTCACCGTGTT
GGGCACGTCCTCTCTCACGCAGATGCTCGGATTGAGCGACACTCTAGGAG
CCTTTTTGGCCGGTGTTATGCTGGCGGAGACCAAGTTTAGGCATCAGGTG
GAGGCTGATATCAAGCCCTTCCGAGGTATTTTGCTTGGTTTGTTCTTCAT
GACGGTTGGCTTTTCAATTGATCTCAATCTCGCATGGGCCAATATGAGCA
AGGTGGTGTCCCTAGTATCTGGCCTGTTGGCCATTAAGGCCAGTGTTATT
GCTGCTGCCGGTGTTGCTTTTGGACTAAGTGTCGGATCTGCTCTACGAAC
CGGGCTGCTTCTCTCTCAGGGAGGCGAGTTTGCCTTTGTCATCTTTGGCC
TTGGACTATCGGTTGGTGTGTTGCCTGCCGATCTCAGTCAGTTATTGCTG
CTTGTAGTGGCCATCTCTATGGCTGTAACGCCGCTCTTGGCTGCCATCGG
GCGACAAATATCATCCCAGTTGGAGAAGAAGAGGGGCCTCATCGGTGTGC
GCATGGAAGATGCGGACACCGCTGATGCTCGCGATTTTGTCATGGTAGCC
GGCTGGGGCCGCGTCGGCCAGTCTGTTTGTGAAATGCTCGATGCCAAGCT
TGTGAGGTACATGGCGTTCGACATGTCTCCCACACGAGTCATTGACGCGC
GTAATAAGGGCCTGCCGGTATTCTTTGGCGATGCTTCCCGTCCTGAGGTG
TTGCGCGCAGCTGGCGTTGAAAGAGCCCGTGCTCTTGTTGTCACGCTCGA
TGACCCAGAACAGGCGCTGAGAGCCGTTCAGAACATTCGCAGAGAATTTG
AAGGAGTCAAGGTGTTCTGCCGCGCTCGAGATGCGAAACATCAGAAACTG
TTGCAGGCTGCTGGGGCTACCGCTATCGTACCTGAGCTACTGGAGGCCTC
GCTCCTTCTAGGTGGCGCTGTTCTCCTGGACTATGGAACGCCCATGGATG
AAGTTAATTCTTTAGTGGAGGAGGCAAGATCAGAGAACCTCGCAGAGATT
GGAGTGGCTGATAACGTAACTGCCACCATTGGTTCAGCGTTCAAGGAGTC
GAGATCACGAACAATTCATGAACAAGAACAAAAGCCCACAGAGCCTGTTG
TGGAGGAAGATGATGAGAGCGAAGAACCTGAGCTTGTTCCCCTTGAATCT
GATGTTAAGAGTGAGGATATCCCGCTCGCTTCGACTAGTACTGACAACAC
TGAGGACATCTATGAGCCTGCAGAGCAAGTGAACGGGCCAGCAGATGATG
GTGTGGTTCAAGGAAAGAAAGCTGCCGTTGTGGAAGATCTAGAATCAGAT
TCAGTAAGGTAA