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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 4081.Solyc02g021470.2.1 |
| PFAMs | Cullin,Cullin_Nedd8 |
| Max annot lvl | 35493|Streptophyta |
| KEGG ko | ko:K10609 |
| KEGG Pathway | ko03420,ko04120,map03420,map04120 |
| KEGG Module | M00385,M00386 |
| GOs | GO:0000003,GO:0000151,GO:0000209,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009640,GO:0009648,GO:0009719,GO:0009725,GO:0009743,GO:0009755,GO:0009756,GO:0009790,GO:0009791,GO:0009793,GO:0009908,GO:0009987,GO:0010033,GO:0010099,GO:0010100,GO:0010154,GO:0010182,GO:0010228,GO:0016567,GO:0019538,GO:0019899,GO:0022414,GO:0023052,GO:0031461,GO:0031625,GO:0032446,GO:0032501,GO:0032502,GO:0032870,GO:0032991,GO:0033554,GO:0034641,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048316,GO:0048366,GO:0048367,GO:0048519,GO:0048572,GO:0048573,GO:0048575,GO:0048580,GO:0048581,GO:0048583,GO:0048585,GO:0048608,GO:0048731,GO:0048825,GO:0048827,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051239,GO:0051241,GO:0051716,GO:0061458,GO:0065007,GO:0070647,GO:0070887,GO:0071310,GO:0071322,GO:0071495,GO:0071704,GO:0080008,GO:0090304,GO:0090567,GO:0099402,GO:1901360,GO:1901564,GO:1901700,GO:1901701,GO:1902494,GO:1990234,GO:2000026,GO:2000030 |
| Evalue | 1.59e-242 |
| EggNOG OGs | COG5647@1|root,KOG2167@2759|Eukaryota,37ICM@33090|Viridiplantae,3GA8A@35493|Streptophyta,44ERT@71274|asterids |
| Description | Belongs to the cullin family |
| COG category | D |
| BRITE | ko00000,ko00001,ko00002,ko03400,ko04121,ko04147 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra8771.t1.start1 | Ggra8771.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000860_pilon 82736..82738 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra8771.t1 ID=Ggra8771.t1|Name=Ggra8771.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=752bp MASGAHTGRNGTASRAAAPRKLRIRAYERKPSAPPQLFRHAWTTHLQPAV DAVHQSRPIPASLEELYGHVHDVVLHRHAPALYAALKDACDRHIGAAVSK LTAVRAGERAFLDAVLNEWQAFCAHMLRIRQIFLYLDRTYIVHAAHPDAR SFWDMGLLLFRSHFSTAPNLQTHTVNCLLSLINSERDGDAVDVSLIRNLL LMFSAIATYDHAFEKPFLAATDAYYRNESRNLIASRDVPAYLKHAEHRIL DESQRALRTLDPRTRNPLISTVEKRLVSDHVLTLLDNGFSSMCDNHRKDD LKRCYVVLSRASDHMPPDSDSPNELMKTRLIDYVKKVGRAIVMDKSKDPE MVQALLNLKSRLDDLVNYSFDGTEAFNIAINFAFESFVNARENKPAELIA KFVDGILRTGNKGFSEEQLESTLDRALTLFRFIDGKDVFEAFYNKDLAKR LLYDKSASLDLEKSMISKLKQECGPQFTLKLEAMFKDVDASKDLMQSFRT HRVSKIKLAKGVDLNVFVLEAARWPLSTQPSNVKLPQSLMDCQEVFKNFY LTKHNGRKLAWQHVDGSCTVNANFPEGIKILQLSLYQTIVMVLFNDVDEI TYPDIAEATGIDEQPLKRTLLSLACGKARVLQKKPKGPRVSTTDSFVFNK KFTHRLTKLKINAIQMKETVEENAATTEKVFQERNYQIDAAVVRIMKTRR TLQHTALLSEIYNQLRFPHKPGDVKKRIESLLEREYLERDANNPQTYHYL A* back to topspliced messenger RNA >Ggra8771.t1 ID=Ggra8771.t1|Name=Ggra8771.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2256bp|location=Sequence derived from alignment at tig00000860_pilon:80483..82738- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCCAGCGGCGCGCACACTGGCCGCAACGGCACGGCTTCCCGCGCCGC GGCGCCCAGAAAGCTGCGCATCCGCGCGTATGAGCGCAAGCCGTCCGCGC CGCCGCAGCTGTTCCGCCACGCGTGGACCACGCACCTACAGCCGGCCGTG GACGCCGTGCATCAGAGCCGCCCCATCCCCGCGTCGCTGGAGGAGCTGTA CGGTCATGTGCACGACGTGGTGCTGCACCGCCACGCACCCGCGCTGTACG CCGCGTTGAAGGACGCCTGCGACCGCCATATCGGCGCCGCCGTGTCCAAG CTCACCGCCGTGCGCGCCGGCGAACGCGCCTTTCTGGACGCCGTGCTCAA CGAATGGCAGGCCTTTTGCGCCCATATGCTGCGCATACGACAGATCTTTC TTTACTTGGATCGCACCTACATCGTGCATGCCGCCCACCCGGACGCCAGG TCCTTTTGGGACATGGGCCTTCTTTTATTCCGTTCGCACTTTTCCACCGC CCCCAACCTGCAGACCCACACCGTCAACTGTCTGCTGTCGCTCATCAACA GCGAGCGTGATGGCGACGCTGTTGACGTCTCGCTCATTCGCAACTTGCTG CTCATGTTTTCCGCCATCGCCACCTACGACCACGCCTTTGAGAAGCCCTT TCTGGCCGCCACCGATGCCTATTATCGCAACGAATCGCGCAATCTCATCG CGTCGCGCGACGTCCCGGCCTATCTCAAGCACGCCGAGCATCGCATTCTG GACGAGTCTCAGCGCGCGCTCAGAACGCTTGATCCCCGAACGCGTAATCC GCTCATTTCCACCGTTGAGAAGCGCCTCGTGTCGGACCACGTCTTGACGT TGCTTGATAATGGCTTCAGCTCCATGTGCGATAACCACCGCAAGGATGAC CTCAAGCGTTGTTACGTCGTGCTGTCACGCGCCAGTGATCACATGCCGCC AGACTCTGATTCGCCCAATGAGCTCATGAAAACGCGCCTTATCGACTACG TCAAAAAGGTCGGTCGCGCTATTGTCATGGACAAGTCAAAGGACCCCGAA ATGGTTCAGGCCTTGCTCAACCTCAAGTCCAGGCTCGATGACCTTGTTAA CTACTCGTTTGATGGCACGGAGGCCTTCAACATTGCTATCAATTTTGCGT TCGAGTCGTTTGTAAATGCGCGCGAGAACAAGCCTGCGGAACTCATTGCC AAGTTTGTGGACGGTATTCTGCGCACGGGTAACAAAGGCTTCTCTGAGGA ACAACTGGAGTCTACATTGGATAGGGCGCTTACCCTTTTCCGCTTTATCG ATGGAAAGGACGTGTTTGAGGCCTTTTATAACAAGGATCTTGCAAAGCGT TTGCTCTATGACAAGTCTGCTAGTTTAGATCTCGAAAAGAGTATGATTTC CAAACTAAAACAGGAATGCGGGCCGCAGTTCACGTTAAAGCTGGAAGCCA TGTTCAAGGATGTCGATGCAAGCAAGGATCTTATGCAGAGTTTCCGAACG CATAGGGTATCGAAGATAAAGTTAGCCAAAGGCGTTGATCTCAATGTTTT CGTCTTGGAAGCTGCTCGATGGCCGCTTAGCACTCAGCCCTCAAACGTCA AGTTGCCTCAATCGCTTATGGATTGTCAAGAGGTCTTCAAGAACTTTTAT CTCACCAAGCACAACGGTCGTAAACTGGCTTGGCAGCATGTTGATGGCTC ATGCACTGTGAATGCAAATTTTCCGGAGGGAATCAAGATCTTGCAGCTGT CCTTGTATCAAACTATTGTGATGGTTCTCTTCAACGACGTTGATGAGATA ACCTACCCTGATATTGCCGAAGCAACTGGAATTGACGAACAACCCCTGAA GCGAACCCTCTTATCGCTTGCTTGCGGGAAAGCTAGGGTGTTGCAAAAGA AACCCAAGGGTCCCCGTGTTTCGACTACCGACTCTTTTGTATTTAACAAG AAGTTCACACATCGCCTAACAAAACTGAAGATCAATGCTATTCAAATGAA GGAAACTGTAGAGGAGAATGCCGCCACGACAGAAAAGGTGTTCCAAGAAA GAAACTACCAAATCGATGCCGCTGTTGTACGAATTATGAAGACAAGACGC ACATTGCAACATACCGCGCTGCTTTCGGAAATATATAATCAGCTGCGATT TCCACACAAGCCTGGCGACGTGAAGAAACGAATAGAGTCACTTCTTGAAC GCGAGTACCTGGAACGAGATGCAAACAACCCGCAGACATATCACTACTTG GCCTAA back to topprotein sequence of Ggra8771.t1 >Ggra8771.t1 ID=Ggra8771.t1|Name=Ggra8771.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=752bp
MASGAHTGRNGTASRAAAPRKLRIRAYERKPSAPPQLFRHAWTTHLQPAV DAVHQSRPIPASLEELYGHVHDVVLHRHAPALYAALKDACDRHIGAAVSK LTAVRAGERAFLDAVLNEWQAFCAHMLRIRQIFLYLDRTYIVHAAHPDAR SFWDMGLLLFRSHFSTAPNLQTHTVNCLLSLINSERDGDAVDVSLIRNLL LMFSAIATYDHAFEKPFLAATDAYYRNESRNLIASRDVPAYLKHAEHRIL DESQRALRTLDPRTRNPLISTVEKRLVSDHVLTLLDNGFSSMCDNHRKDD LKRCYVVLSRASDHMPPDSDSPNELMKTRLIDYVKKVGRAIVMDKSKDPE MVQALLNLKSRLDDLVNYSFDGTEAFNIAINFAFESFVNARENKPAELIA KFVDGILRTGNKGFSEEQLESTLDRALTLFRFIDGKDVFEAFYNKDLAKR LLYDKSASLDLEKSMISKLKQECGPQFTLKLEAMFKDVDASKDLMQSFRT HRVSKIKLAKGVDLNVFVLEAARWPLSTQPSNVKLPQSLMDCQEVFKNFY LTKHNGRKLAWQHVDGSCTVNANFPEGIKILQLSLYQTIVMVLFNDVDEI TYPDIAEATGIDEQPLKRTLLSLACGKARVLQKKPKGPRVSTTDSFVFNK KFTHRLTKLKINAIQMKETVEENAATTEKVFQERNYQIDAAVVRIMKTRR TLQHTALLSEIYNQLRFPHKPGDVKKRIESLLEREYLERDANNPQTYHYL A* back to topmRNA from alignment at tig00000860_pilon:80483..82738- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra8771.t1 ID=Ggra8771.t1|Name=Ggra8771.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2256bp|location=Sequence derived from alignment at tig00000860_pilon:80483..82738- (Gracilaria gracilis GNS1m male) ATGGCCAGCGGCGCGCACACTGGCCGCAACGGCACGGCTTCCCGCGCCGC
GGCGCCCAGAAAGCTGCGCATCCGCGCGTATGAGCGCAAGCCGTCCGCGC
CGCCGCAGCTGTTCCGCCACGCGTGGACCACGCACCTACAGCCGGCCGTG
GACGCCGTGCATCAGAGCCGCCCCATCCCCGCGTCGCTGGAGGAGCTGTA
CGGTCATGTGCACGACGTGGTGCTGCACCGCCACGCACCCGCGCTGTACG
CCGCGTTGAAGGACGCCTGCGACCGCCATATCGGCGCCGCCGTGTCCAAG
CTCACCGCCGTGCGCGCCGGCGAACGCGCCTTTCTGGACGCCGTGCTCAA
CGAATGGCAGGCCTTTTGCGCCCATATGCTGCGCATACGACAGATCTTTC
TTTACTTGGATCGCACCTACATCGTGCATGCCGCCCACCCGGACGCCAGG
TCCTTTTGGGACATGGGCCTTCTTTTATTCCGTTCGCACTTTTCCACCGC
CCCCAACCTGCAGACCCACACCGTCAACTGTCTGCTGTCGCTCATCAACA
GCGAGCGTGATGGCGACGCTGTTGACGTCTCGCTCATTCGCAACTTGCTG
CTCATGTTTTCCGCCATCGCCACCTACGACCACGCCTTTGAGAAGCCCTT
TCTGGCCGCCACCGATGCCTATTATCGCAACGAATCGCGCAATCTCATCG
CGTCGCGCGACGTCCCGGCCTATCTCAAGCACGCCGAGCATCGCATTCTG
GACGAGTCTCAGCGCGCGCTCAGAACGCTTGATCCCCGAACGCGTAATCC
GCTCATTTCCACCGTTGAGAAGCGCCTCGTGTCGGACCACGTCTTGACGT
TGCTTGATAATGGCTTCAGCTCCATGTGCGATAACCACCGCAAGGATGAC
CTCAAGCGTTGTTACGTCGTGCTGTCACGCGCCAGTGATCACATGCCGCC
AGACTCTGATTCGCCCAATGAGCTCATGAAAACGCGCCTTATCGACTACG
TCAAAAAGGTCGGTCGCGCTATTGTCATGGACAAGTCAAAGGACCCCGAA
ATGGTTCAGGCCTTGCTCAACCTCAAGTCCAGGCTCGATGACCTTGTTAA
CTACTCGTTTGATGGCACGGAGGCCTTCAACATTGCTATCAATTTTGCGT
TCGAGTCGTTTGTAAATGCGCGCGAGAACAAGCCTGCGGAACTCATTGCC
AAGTTTGTGGACGGTATTCTGCGCACGGGTAACAAAGGCTTCTCTGAGGA
ACAACTGGAGTCTACATTGGATAGGGCGCTTACCCTTTTCCGCTTTATCG
ATGGAAAGGACGTGTTTGAGGCCTTTTATAACAAGGATCTTGCAAAGCGT
TTGCTCTATGACAAGTCTGCTAGTTTAGATCTCGAAAAGAGTATGATTTC
CAAACTAAAACAGGAATGCGGGCCGCAGTTCACGTTAAAGCTGGAAGCCA
TGTTCAAGGATGTCGATGCAAGCAAGGATCTTATGCAGAGTTTCCGAACG
CATAGGGTATCGAAGATAAAGTTAGCCAAAGGCGTTGATCTCAATGTTTT
CGTCTTGGAAGCTGCTCGATGGCCGCTTAGCACTCAGCCCTCAAACGTCA
AGTTGCCTCAATCGCTTATGGATTGTCAAGAGGTCTTCAAGAACTTTTAT
CTCACCAAGCACAACGGTCGTAAACTGGCTTGGCAGCATGTTGATGGCTC
ATGCACTGTGAATGCAAATTTTCCGGAGGGAATCAAGATCTTGCAGCTGT
CCTTGTATCAAACTATTGTGATGGTTCTCTTCAACGACGTTGATGAGATA
ACCTACCCTGATATTGCCGAAGCAACTGGAATTGACGAACAACCCCTGAA
GCGAACCCTCTTATCGCTTGCTTGCGGGAAAGCTAGGGTGTTGCAAAAGA
AACCCAAGGGTCCCCGTGTTTCGACTACCGACTCTTTTGTATTTAACAAG
AAGTTCACACATCGCCTAACAAAACTGAAGATCAATGCTATTCAAATGAA
GGAAACTGTAGAGGAGAATGCCGCCACGACAGAAAAGGTGTTCCAAGAAA
GAAACTACCAAATCGATGCCGCTGTTGTACGAATTATGAAGACAAGACGC
ACATTGCAACATACCGCGCTGCTTTCGGAAATATATAATCAGCTGCGATT
TCCACACAAGCCTGGCGACGTGAAGAAACGAATAGAGTCACTTCTTGAAC
GCGAGTACCTGGAACGAGATGCAAACAACCCGCAGACATATCACTACTTG
GCCTAA back to topCoding sequence (CDS) from alignment at tig00000860_pilon:80483..82738- >Ggra8771.t1 ID=Ggra8771.t1|Name=Ggra8771.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2256bp|location=Sequence derived from alignment at tig00000860_pilon:80483..82738- (Gracilaria gracilis GNS1m male) ATGGCCAGCGGCGCGCACACTGGCCGCAACGGCACGGCTTCCCGCGCCGC GGCGCCCAGAAAGCTGCGCATCCGCGCGTATGAGCGCAAGCCGTCCGCGC CGCCGCAGCTGTTCCGCCACGCGTGGACCACGCACCTACAGCCGGCCGTG GACGCCGTGCATCAGAGCCGCCCCATCCCCGCGTCGCTGGAGGAGCTGTA CGGTCATGTGCACGACGTGGTGCTGCACCGCCACGCACCCGCGCTGTACG CCGCGTTGAAGGACGCCTGCGACCGCCATATCGGCGCCGCCGTGTCCAAG CTCACCGCCGTGCGCGCCGGCGAACGCGCCTTTCTGGACGCCGTGCTCAA CGAATGGCAGGCCTTTTGCGCCCATATGCTGCGCATACGACAGATCTTTC TTTACTTGGATCGCACCTACATCGTGCATGCCGCCCACCCGGACGCCAGG TCCTTTTGGGACATGGGCCTTCTTTTATTCCGTTCGCACTTTTCCACCGC CCCCAACCTGCAGACCCACACCGTCAACTGTCTGCTGTCGCTCATCAACA GCGAGCGTGATGGCGACGCTGTTGACGTCTCGCTCATTCGCAACTTGCTG CTCATGTTTTCCGCCATCGCCACCTACGACCACGCCTTTGAGAAGCCCTT TCTGGCCGCCACCGATGCCTATTATCGCAACGAATCGCGCAATCTCATCG CGTCGCGCGACGTCCCGGCCTATCTCAAGCACGCCGAGCATCGCATTCTG GACGAGTCTCAGCGCGCGCTCAGAACGCTTGATCCCCGAACGCGTAATCC GCTCATTTCCACCGTTGAGAAGCGCCTCGTGTCGGACCACGTCTTGACGT TGCTTGATAATGGCTTCAGCTCCATGTGCGATAACCACCGCAAGGATGAC CTCAAGCGTTGTTACGTCGTGCTGTCACGCGCCAGTGATCACATGCCGCC AGACTCTGATTCGCCCAATGAGCTCATGAAAACGCGCCTTATCGACTACG TCAAAAAGGTCGGTCGCGCTATTGTCATGGACAAGTCAAAGGACCCCGAA ATGGTTCAGGCCTTGCTCAACCTCAAGTCCAGGCTCGATGACCTTGTTAA CTACTCGTTTGATGGCACGGAGGCCTTCAACATTGCTATCAATTTTGCGT TCGAGTCGTTTGTAAATGCGCGCGAGAACAAGCCTGCGGAACTCATTGCC AAGTTTGTGGACGGTATTCTGCGCACGGGTAACAAAGGCTTCTCTGAGGA ACAACTGGAGTCTACATTGGATAGGGCGCTTACCCTTTTCCGCTTTATCG ATGGAAAGGACGTGTTTGAGGCCTTTTATAACAAGGATCTTGCAAAGCGT TTGCTCTATGACAAGTCTGCTAGTTTAGATCTCGAAAAGAGTATGATTTC CAAACTAAAACAGGAATGCGGGCCGCAGTTCACGTTAAAGCTGGAAGCCA TGTTCAAGGATGTCGATGCAAGCAAGGATCTTATGCAGAGTTTCCGAACG CATAGGGTATCGAAGATAAAGTTAGCCAAAGGCGTTGATCTCAATGTTTT CGTCTTGGAAGCTGCTCGATGGCCGCTTAGCACTCAGCCCTCAAACGTCA AGTTGCCTCAATCGCTTATGGATTGTCAAGAGGTCTTCAAGAACTTTTAT CTCACCAAGCACAACGGTCGTAAACTGGCTTGGCAGCATGTTGATGGCTC ATGCACTGTGAATGCAAATTTTCCGGAGGGAATCAAGATCTTGCAGCTGT CCTTGTATCAAACTATTGTGATGGTTCTCTTCAACGACGTTGATGAGATA ACCTACCCTGATATTGCCGAAGCAACTGGAATTGACGAACAACCCCTGAA GCGAACCCTCTTATCGCTTGCTTGCGGGAAAGCTAGGGTGTTGCAAAAGA AACCCAAGGGTCCCCGTGTTTCGACTACCGACTCTTTTGTATTTAACAAG AAGTTCACACATCGCCTAACAAAACTGAAGATCAATGCTATTCAAATGAA GGAAACTGTAGAGGAGAATGCCGCCACGACAGAAAAGGTGTTCCAAGAAA GAAACTACCAAATCGATGCCGCTGTTGTACGAATTATGAAGACAAGACGC ACATTGCAACATACCGCGCTGCTTTCGGAAATATATAATCAGCTGCGATT TCCACACAAGCCTGGCGACGTGAAGAAACGAATAGAGTCACTTCTTGAAC GCGAGTACCTGGAACGAGATGCAAACAACCCGCAGACATATCACTACTTG GCCTAA back to top
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