Ggra8770.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8770.t1
Unique NameGgra8770.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length503
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:78151..79659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3827.XP_004512403.1
PFAMsMethyltransf_29
Max annot lvl35493|Streptophyta
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0012505,GO:0016740,GO:0016741,GO:0031410,GO:0031982,GO:0031984,GO:0032259,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0097708,GO:0098791
Evalue1.03e-16
EggNOG OGs2CMGJ@1|root,2QQA9@2759|Eukaryota,37I2B@33090|Viridiplantae,3GCRD@35493|Streptophyta,4JDU4@91835|fabids
DescriptionEncoded by
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8770Ggra8770Gracilaria gracilis GNS1m malegenetig00000860_pilon 78151..79659 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8770.t1.stop1Ggra8770.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 78151..78153 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8770.t1.CDS1Ggra8770.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 78151..79659 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8770.t1.exon1Ggra8770.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 78151..79659 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8770.t1.start1Ggra8770.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 79657..79659 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8770.t1Ggra8770.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 78151..79659 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8770.t1 ID=Ggra8770.t1|Name=Ggra8770.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=503bp
MKDLRTLLRTLRVAPLLLVLLFIFLRPSQLRSFAKISECADPFYVRVPNT
LNTPHTPTRWPCVVTPPLNYTPPLPRPRSLWRTPLANVGELDTSNSEHRL
HLANQRWARLEAHEVNIREEGGTSGRSFRNNFEYVKFLIQQLKPIRRCAP
DSPQVMLDMGAGIGSVAAALLDERGGAGAIQALSYVWPDDYLRLQTIISD
RGLPSFLANFTGTLPFPHSTFDIVHCKWCWHHKAGYDTWLDEVNRLLVPG
GFFVFTFAPEGSDLLQHPAWEEALARQPFICEKVHRIITMCQKHRVQDVA
KEDHGRFRNAAYCPKHVKRHIAKSRKRYENKLAQIEKERLSLIEIVNEVS
GNSTTRVLNVNCPNAALCAEMDNLLQSSVLHVNQESQSRIVKGILSLGGL
AMLHNWKNNIPVYPRSFDVVNIGCDASSKHLLEQHEFWFELHRVLRPGGF
VILRRSFCRWYFKHEISFKRYGFVTEKALKHVFVARRELYVAPNIISKGM
RV*
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spliced messenger RNA

>Ggra8770.t1 ID=Ggra8770.t1|Name=Ggra8770.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1509bp|location=Sequence derived from alignment at tig00000860_pilon:78151..79659- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGATTTGAGAACTTTACTACGTACATTGAGGGTTGCGCCGCTACT
CCTTGTATTGCTTTTCATCTTCCTTCGACCCTCTCAGCTGCGCTCTTTCG
CAAAGATATCTGAATGTGCGGATCCATTTTACGTTAGAGTACCAAATACT
CTAAACACACCGCACACTCCCACAAGGTGGCCATGCGTAGTAACACCCCC
GCTCAACTACACACCGCCACTTCCCCGTCCTCGTTCGCTGTGGCGCACAC
CGCTCGCCAACGTTGGTGAGCTCGATACCAGCAACTCCGAGCATCGGCTC
CATCTAGCGAACCAAAGATGGGCTCGATTAGAGGCGCATGAGGTGAACAT
ACGAGAAGAAGGCGGCACGTCCGGCAGGTCTTTTCGGAACAACTTTGAAT
ATGTCAAGTTCTTGATTCAGCAACTAAAACCCATAAGGCGCTGCGCCCCC
GATTCGCCTCAGGTCATGTTGGACATGGGAGCTGGTATCGGATCTGTCGC
TGCTGCTCTTCTCGACGAACGTGGAGGTGCCGGGGCAATTCAAGCCCTTT
CATATGTTTGGCCGGATGATTATCTCAGATTACAGACGATCATCTCAGAT
AGAGGCCTTCCATCTTTCCTGGCCAACTTCACTGGAACATTACCATTTCC
CCATTCAACTTTCGACATCGTGCACTGCAAGTGGTGCTGGCATCATAAAG
CCGGGTATGACACCTGGCTGGACGAAGTAAACCGGCTTCTAGTACCTGGA
GGGTTCTTCGTTTTTACCTTTGCTCCAGAAGGATCTGACTTGTTGCAGCA
TCCAGCATGGGAGGAAGCCTTGGCGAGACAACCGTTCATATGCGAAAAAG
TTCACAGAATCATTACAATGTGCCAGAAGCATCGCGTCCAAGATGTTGCT
AAGGAGGACCATGGCCGTTTTCGGAACGCAGCTTACTGTCCAAAGCATGT
GAAGAGACACATTGCAAAATCGAGAAAGAGATACGAAAATAAACTTGCGC
AGATTGAGAAGGAGCGATTGTCGTTGATCGAAATCGTGAACGAGGTGTCC
GGGAACAGCACCACGAGAGTTCTAAACGTCAATTGTCCAAATGCTGCCCT
TTGCGCAGAAATGGATAACCTGCTCCAGAGCAGCGTGCTACATGTAAATC
AAGAGTCTCAGAGTCGGATTGTGAAAGGGATTCTGAGTCTTGGAGGCTTG
GCAATGTTACACAACTGGAAGAATAATATTCCAGTATACCCTCGATCTTT
CGATGTGGTCAATATCGGTTGCGACGCAAGTTCGAAGCATCTGCTGGAGC
AGCACGAATTTTGGTTTGAACTTCACCGAGTACTTCGACCTGGTGGCTTC
GTAATCCTGAGGAGAAGCTTCTGTCGATGGTACTTTAAGCACGAGATATC
ATTCAAGCGTTATGGGTTTGTGACGGAGAAGGCTTTGAAACATGTTTTCG
TGGCAAGAAGGGAATTGTACGTGGCGCCGAACATAATATCCAAAGGCATG
AGGGTATAA
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protein sequence of Ggra8770.t1

>Ggra8770.t1 ID=Ggra8770.t1|Name=Ggra8770.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=503bp
MKDLRTLLRTLRVAPLLLVLLFIFLRPSQLRSFAKISECADPFYVRVPNT
LNTPHTPTRWPCVVTPPLNYTPPLPRPRSLWRTPLANVGELDTSNSEHRL
HLANQRWARLEAHEVNIREEGGTSGRSFRNNFEYVKFLIQQLKPIRRCAP
DSPQVMLDMGAGIGSVAAALLDERGGAGAIQALSYVWPDDYLRLQTIISD
RGLPSFLANFTGTLPFPHSTFDIVHCKWCWHHKAGYDTWLDEVNRLLVPG
GFFVFTFAPEGSDLLQHPAWEEALARQPFICEKVHRIITMCQKHRVQDVA
KEDHGRFRNAAYCPKHVKRHIAKSRKRYENKLAQIEKERLSLIEIVNEVS
GNSTTRVLNVNCPNAALCAEMDNLLQSSVLHVNQESQSRIVKGILSLGGL
AMLHNWKNNIPVYPRSFDVVNIGCDASSKHLLEQHEFWFELHRVLRPGGF
VILRRSFCRWYFKHEISFKRYGFVTEKALKHVFVARRELYVAPNIISKGM
RV*
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mRNA from alignment at tig00000860_pilon:78151..79659-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8770.t1 ID=Ggra8770.t1|Name=Ggra8770.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1509bp|location=Sequence derived from alignment at tig00000860_pilon:78151..79659- (Gracilaria gracilis GNS1m male)
ATGAAGGATTTGAGAACTTTACTACGTACATTGAGGGTTGCGCCGCTACT
CCTTGTATTGCTTTTCATCTTCCTTCGACCCTCTCAGCTGCGCTCTTTCG
CAAAGATATCTGAATGTGCGGATCCATTTTACGTTAGAGTACCAAATACT
CTAAACACACCGCACACTCCCACAAGGTGGCCATGCGTAGTAACACCCCC
GCTCAACTACACACCGCCACTTCCCCGTCCTCGTTCGCTGTGGCGCACAC
CGCTCGCCAACGTTGGTGAGCTCGATACCAGCAACTCCGAGCATCGGCTC
CATCTAGCGAACCAAAGATGGGCTCGATTAGAGGCGCATGAGGTGAACAT
ACGAGAAGAAGGCGGCACGTCCGGCAGGTCTTTTCGGAACAACTTTGAAT
ATGTCAAGTTCTTGATTCAGCAACTAAAACCCATAAGGCGCTGCGCCCCC
GATTCGCCTCAGGTCATGTTGGACATGGGAGCTGGTATCGGATCTGTCGC
TGCTGCTCTTCTCGACGAACGTGGAGGTGCCGGGGCAATTCAAGCCCTTT
CATATGTTTGGCCGGATGATTATCTCAGATTACAGACGATCATCTCAGAT
AGAGGCCTTCCATCTTTCCTGGCCAACTTCACTGGAACATTACCATTTCC
CCATTCAACTTTCGACATCGTGCACTGCAAGTGGTGCTGGCATCATAAAG
CCGGGTATGACACCTGGCTGGACGAAGTAAACCGGCTTCTAGTACCTGGA
GGGTTCTTCGTTTTTACCTTTGCTCCAGAAGGATCTGACTTGTTGCAGCA
TCCAGCATGGGAGGAAGCCTTGGCGAGACAACCGTTCATATGCGAAAAAG
TTCACAGAATCATTACAATGTGCCAGAAGCATCGCGTCCAAGATGTTGCT
AAGGAGGACCATGGCCGTTTTCGGAACGCAGCTTACTGTCCAAAGCATGT
GAAGAGACACATTGCAAAATCGAGAAAGAGATACGAAAATAAACTTGCGC
AGATTGAGAAGGAGCGATTGTCGTTGATCGAAATCGTGAACGAGGTGTCC
GGGAACAGCACCACGAGAGTTCTAAACGTCAATTGTCCAAATGCTGCCCT
TTGCGCAGAAATGGATAACCTGCTCCAGAGCAGCGTGCTACATGTAAATC
AAGAGTCTCAGAGTCGGATTGTGAAAGGGATTCTGAGTCTTGGAGGCTTG
GCAATGTTACACAACTGGAAGAATAATATTCCAGTATACCCTCGATCTTT
CGATGTGGTCAATATCGGTTGCGACGCAAGTTCGAAGCATCTGCTGGAGC
AGCACGAATTTTGGTTTGAACTTCACCGAGTACTTCGACCTGGTGGCTTC
GTAATCCTGAGGAGAAGCTTCTGTCGATGGTACTTTAAGCACGAGATATC
ATTCAAGCGTTATGGGTTTGTGACGGAGAAGGCTTTGAAACATGTTTTCG
TGGCAAGAAGGGAATTGTACGTGGCGCCGAACATAATATCCAAAGGCATG
AGGGTATAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:78151..79659-

>Ggra8770.t1 ID=Ggra8770.t1|Name=Ggra8770.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1509bp|location=Sequence derived from alignment at tig00000860_pilon:78151..79659- (Gracilaria gracilis GNS1m male)
ATGAAGGATTTGAGAACTTTACTACGTACATTGAGGGTTGCGCCGCTACT
CCTTGTATTGCTTTTCATCTTCCTTCGACCCTCTCAGCTGCGCTCTTTCG
CAAAGATATCTGAATGTGCGGATCCATTTTACGTTAGAGTACCAAATACT
CTAAACACACCGCACACTCCCACAAGGTGGCCATGCGTAGTAACACCCCC
GCTCAACTACACACCGCCACTTCCCCGTCCTCGTTCGCTGTGGCGCACAC
CGCTCGCCAACGTTGGTGAGCTCGATACCAGCAACTCCGAGCATCGGCTC
CATCTAGCGAACCAAAGATGGGCTCGATTAGAGGCGCATGAGGTGAACAT
ACGAGAAGAAGGCGGCACGTCCGGCAGGTCTTTTCGGAACAACTTTGAAT
ATGTCAAGTTCTTGATTCAGCAACTAAAACCCATAAGGCGCTGCGCCCCC
GATTCGCCTCAGGTCATGTTGGACATGGGAGCTGGTATCGGATCTGTCGC
TGCTGCTCTTCTCGACGAACGTGGAGGTGCCGGGGCAATTCAAGCCCTTT
CATATGTTTGGCCGGATGATTATCTCAGATTACAGACGATCATCTCAGAT
AGAGGCCTTCCATCTTTCCTGGCCAACTTCACTGGAACATTACCATTTCC
CCATTCAACTTTCGACATCGTGCACTGCAAGTGGTGCTGGCATCATAAAG
CCGGGTATGACACCTGGCTGGACGAAGTAAACCGGCTTCTAGTACCTGGA
GGGTTCTTCGTTTTTACCTTTGCTCCAGAAGGATCTGACTTGTTGCAGCA
TCCAGCATGGGAGGAAGCCTTGGCGAGACAACCGTTCATATGCGAAAAAG
TTCACAGAATCATTACAATGTGCCAGAAGCATCGCGTCCAAGATGTTGCT
AAGGAGGACCATGGCCGTTTTCGGAACGCAGCTTACTGTCCAAAGCATGT
GAAGAGACACATTGCAAAATCGAGAAAGAGATACGAAAATAAACTTGCGC
AGATTGAGAAGGAGCGATTGTCGTTGATCGAAATCGTGAACGAGGTGTCC
GGGAACAGCACCACGAGAGTTCTAAACGTCAATTGTCCAAATGCTGCCCT
TTGCGCAGAAATGGATAACCTGCTCCAGAGCAGCGTGCTACATGTAAATC
AAGAGTCTCAGAGTCGGATTGTGAAAGGGATTCTGAGTCTTGGAGGCTTG
GCAATGTTACACAACTGGAAGAATAATATTCCAGTATACCCTCGATCTTT
CGATGTGGTCAATATCGGTTGCGACGCAAGTTCGAAGCATCTGCTGGAGC
AGCACGAATTTTGGTTTGAACTTCACCGAGTACTTCGACCTGGTGGCTTC
GTAATCCTGAGGAGAAGCTTCTGTCGATGGTACTTTAAGCACGAGATATC
ATTCAAGCGTTATGGGTTTGTGACGGAGAAGGCTTTGAAACATGTTTTCG
TGGCAAGAAGGGAATTGTACGTGGCGCCGAACATAATATCCAAAGGCATG
AGGGTATAA
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