Ggra877.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra877.t1
Unique NameGgra877.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length381
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000212_piloncontigtig00000212_pilon:39933..41276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMH036CT
PFAMsPALP
Max annot lvl2759|Eukaryota
KEGG rclassRC00020,RC02814,RC02821
KEGG koko:K01738
KEGG ReactionR00897,R03601,R04859
KEGG Pathwayko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00021
GOsGO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004124,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019344,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue1.22e-145
EggNOG OGsCOG0031@1|root,KOG1481@2759|Eukaryota
EC2.5.1.47
Descriptioncysteine synthase activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra877Ggra877Gracilaria gracilis GNS1m malegenetig00000212_pilon 39933..41276 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra877.t1Ggra877.t1Gracilaria gracilis GNS1m malepolypeptidetig00000212_pilon 39933..41276 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra877.t1.stop1Ggra877.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000212_pilon 39933..39935 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra877.t1.CDS1Ggra877.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000212_pilon 39933..40262 -
Ggra877.t1.CDS2Ggra877.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000212_pilon 40357..41007 -
Ggra877.t1.CDS3Ggra877.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000212_pilon 41115..41276 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra877.t1.exon1Ggra877.t1.exon1Gracilaria gracilis GNS1m maleexontig00000212_pilon 39933..40262 -
Ggra877.t1.exon2Ggra877.t1.exon2Gracilaria gracilis GNS1m maleexontig00000212_pilon 40357..41007 -
Ggra877.t1.exon3Ggra877.t1.exon3Gracilaria gracilis GNS1m maleexontig00000212_pilon 41115..41276 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra877.t1.intron1Ggra877.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000212_pilon 40263..40356 -
Ggra877.t1.intron2Ggra877.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000212_pilon 41008..41114 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra877.t1.start1Ggra877.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000212_pilon 41274..41276 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra877.t1 ID=Ggra877.t1|Name=Ggra877.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=381bp
MSAHVKPFPPRRVLADNVYDGIVDAIGNTPLIKLQRASTETRCNIYGKAE
FLNPGGSVKARAALYLIKDAEQRGLLTPGQPGIIVESTAGNTGISLAQIA
SARGYQCVIVIPSSQSQQKKDALRYAGAQLVQVPPKPYTNPNNYVKFGAR
LAKLLGAVYTNQFDNVANRAAHVATTGPEIWAQLKGNVHAFSCAVGTGGT
LAGTAQFLRSVSDDVKIALTDPCGAKLVRYYRDGTLKAEGDSITEGIGQG
RVTANLEGFKPDYAFEITDEEALDVVYKLMQEEGLCLGTSSGINVAGAIR
VAKQLGGGHNIVTVLCDEGTRYTDKMFNLQFLNDKKLPQPQWLAADLSER
VRDAVAKATIDDEQAAQEQKANAAKLATAH*
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spliced messenger RNA

>Ggra877.t1 ID=Ggra877.t1|Name=Ggra877.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1143bp|location=Sequence derived from alignment at tig00000212_pilon:39933..41276- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCCCACGTCAAGCCCTTCCCGCCGCGCCGCGTGCTGGCCGACAA
CGTGTACGACGGCATCGTCGACGCCATCGGCAACACCCCGCTCATCAAGC
TGCAGCGCGCCTCCACTGAGACGCGCTGCAACATTTACGGCAAAGCCGAG
TTCCTCAACCCTGGCGGCTCCGTCAAGGCGCGCGCCGCGCTCTACCTCAT
CAAAGACGCCGAGCAGCGCGGCCTGCTCACGCCGGGCCAGCCGGGCATTA
TCGTCGAGTCCACGGCGGGCAACACCGGCATCAGTCTGGCGCAGATTGCC
AGCGCGCGCGGCTACCAGTGCGTCATCGTCATCCCGTCGTCGCAGTCGCA
GCAGAAGAAGGACGCGCTGCGCTACGCGGGCGCGCAGCTGGTGCAGGTGC
CGCCCAAGCCGTACACCAACCCCAACAACTACGTCAAGTTTGGCGCGCGC
CTCGCCAAGCTGCTGGGCGCCGTGTATACCAACCAGTTTGACAACGTTGC
CAATCGTGCCGCGCACGTCGCCACCACCGGCCCGGAGATCTGGGCGCAGC
TCAAGGGCAACGTGCACGCCTTCAGCTGTGCGGTGGGCACGGGCGGTACG
CTTGCCGGTACCGCGCAGTTTTTGCGCAGCGTTAGCGATGACGTCAAGAT
CGCGCTTACTGACCCGTGCGGCGCCAAGTTGGTGCGCTATTACCGCGACG
GCACGCTCAAGGCGGAGGGCGACTCCATCACGGAGGGCATTGGACAGGGG
CGTGTGACGGCCAATCTGGAAGGCTTCAAGCCCGACTACGCGTTCGAGAT
CACCGACGAAGAGGCGTTGGACGTGGTTTACAAACTGATGCAGGAGGAAG
GGCTATGTCTAGGCACGTCGTCTGGCATCAATGTAGCCGGTGCCATTCGT
GTAGCCAAACAACTCGGTGGCGGACACAACATCGTGACGGTGCTGTGCGA
CGAGGGCACGCGTTACACGGACAAAATGTTCAACCTGCAGTTCCTAAACG
ACAAGAAGCTGCCACAACCGCAGTGGCTGGCGGCCGATCTGTCGGAGCGT
GTGCGCGACGCCGTGGCCAAAGCCACCATCGACGACGAACAAGCGGCGCA
GGAACAAAAGGCCAACGCGGCCAAGCTGGCGACGGCGCACTGA
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protein sequence of Ggra877.t1

>Ggra877.t1 ID=Ggra877.t1|Name=Ggra877.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=381bp
MSAHVKPFPPRRVLADNVYDGIVDAIGNTPLIKLQRASTETRCNIYGKAE
FLNPGGSVKARAALYLIKDAEQRGLLTPGQPGIIVESTAGNTGISLAQIA
SARGYQCVIVIPSSQSQQKKDALRYAGAQLVQVPPKPYTNPNNYVKFGAR
LAKLLGAVYTNQFDNVANRAAHVATTGPEIWAQLKGNVHAFSCAVGTGGT
LAGTAQFLRSVSDDVKIALTDPCGAKLVRYYRDGTLKAEGDSITEGIGQG
RVTANLEGFKPDYAFEITDEEALDVVYKLMQEEGLCLGTSSGINVAGAIR
VAKQLGGGHNIVTVLCDEGTRYTDKMFNLQFLNDKKLPQPQWLAADLSER
VRDAVAKATIDDEQAAQEQKANAAKLATAH*
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mRNA from alignment at tig00000212_pilon:39933..41276-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra877.t1 ID=Ggra877.t1|Name=Ggra877.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1344bp|location=Sequence derived from alignment at tig00000212_pilon:39933..41276- (Gracilaria gracilis GNS1m male)
ATGAGCGCCCACGTCAAGCCCTTCCCGCCGCGCCGCGTGCTGGCCGACAA
CGTGTACGACGGCATCGTCGACGCCATCGGCAACACCCCGCTCATCAAGC
TGCAGCGCGCCTCCACTGAGACGCGCTGCAACATTTACGGCAAAGCCGAG
TTCCTCAACCCTGTACGTTGCATCTCCCCCACCACTTGCCCACTTGCCCC
CGCGCCCCACCGCGCCGCTCGCTCACCGCCCCACTCTCGCCTCCCCCGCG
CCTTCTCGCACCGGCACAGGGCGGCTCCGTCAAGGCGCGCGCCGCGCTCT
ACCTCATCAAAGACGCCGAGCAGCGCGGCCTGCTCACGCCGGGCCAGCCG
GGCATTATCGTCGAGTCCACGGCGGGCAACACCGGCATCAGTCTGGCGCA
GATTGCCAGCGCGCGCGGCTACCAGTGCGTCATCGTCATCCCGTCGTCGC
AGTCGCAGCAGAAGAAGGACGCGCTGCGCTACGCGGGCGCGCAGCTGGTG
CAGGTGCCGCCCAAGCCGTACACCAACCCCAACAACTACGTCAAGTTTGG
CGCGCGCCTCGCCAAGCTGCTGGGCGCCGTGTATACCAACCAGTTTGACA
ACGTTGCCAATCGTGCCGCGCACGTCGCCACCACCGGCCCGGAGATCTGG
GCGCAGCTCAAGGGCAACGTGCACGCCTTCAGCTGTGCGGTGGGCACGGG
CGGTACGCTTGCCGGTACCGCGCAGTTTTTGCGCAGCGTTAGCGATGACG
TCAAGATCGCGCTTACTGACCCGTGCGGCGCCAAGTTGGTGCGCTATTAC
CGCGACGGCACGCTCAAGGCGGAGGGCGACTCCATCACGGAGGGCATTGG
ACAGGGGCGTGTGACGGCCAATCTGGAAGGCTTCAAGCCCGACTACGCGT
TCGAGATCACCGACGAAGAGGTACGTCAAAGTTGTCAGCGCGTCGAGCGG
CGCTCCCGCGCGCCGTCACTGACCGGATGCCGTATATGCGCATTGATGGT
GCGACAACAAGCAGGCGTTGGACGTGGTTTACAAACTGATGCAGGAGGAA
GGGCTATGTCTAGGCACGTCGTCTGGCATCAATGTAGCCGGTGCCATTCG
TGTAGCCAAACAACTCGGTGGCGGACACAACATCGTGACGGTGCTGTGCG
ACGAGGGCACGCGTTACACGGACAAAATGTTCAACCTGCAGTTCCTAAAC
GACAAGAAGCTGCCACAACCGCAGTGGCTGGCGGCCGATCTGTCGGAGCG
TGTGCGCGACGCCGTGGCCAAAGCCACCATCGACGACGAACAAGCGGCGC
AGGAACAAAAGGCCAACGCGGCCAAGCTGGCGACGGCGCACTGA
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Coding sequence (CDS) from alignment at tig00000212_pilon:39933..41276-

>Ggra877.t1 ID=Ggra877.t1|Name=Ggra877.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1143bp|location=Sequence derived from alignment at tig00000212_pilon:39933..41276- (Gracilaria gracilis GNS1m male)
ATGAGCGCCCACGTCAAGCCCTTCCCGCCGCGCCGCGTGCTGGCCGACAA
CGTGTACGACGGCATCGTCGACGCCATCGGCAACACCCCGCTCATCAAGC
TGCAGCGCGCCTCCACTGAGACGCGCTGCAACATTTACGGCAAAGCCGAG
TTCCTCAACCCTGGCGGCTCCGTCAAGGCGCGCGCCGCGCTCTACCTCAT
CAAAGACGCCGAGCAGCGCGGCCTGCTCACGCCGGGCCAGCCGGGCATTA
TCGTCGAGTCCACGGCGGGCAACACCGGCATCAGTCTGGCGCAGATTGCC
AGCGCGCGCGGCTACCAGTGCGTCATCGTCATCCCGTCGTCGCAGTCGCA
GCAGAAGAAGGACGCGCTGCGCTACGCGGGCGCGCAGCTGGTGCAGGTGC
CGCCCAAGCCGTACACCAACCCCAACAACTACGTCAAGTTTGGCGCGCGC
CTCGCCAAGCTGCTGGGCGCCGTGTATACCAACCAGTTTGACAACGTTGC
CAATCGTGCCGCGCACGTCGCCACCACCGGCCCGGAGATCTGGGCGCAGC
TCAAGGGCAACGTGCACGCCTTCAGCTGTGCGGTGGGCACGGGCGGTACG
CTTGCCGGTACCGCGCAGTTTTTGCGCAGCGTTAGCGATGACGTCAAGAT
CGCGCTTACTGACCCGTGCGGCGCCAAGTTGGTGCGCTATTACCGCGACG
GCACGCTCAAGGCGGAGGGCGACTCCATCACGGAGGGCATTGGACAGGGG
CGTGTGACGGCCAATCTGGAAGGCTTCAAGCCCGACTACGCGTTCGAGAT
CACCGACGAAGAGGCGTTGGACGTGGTTTACAAACTGATGCAGGAGGAAG
GGCTATGTCTAGGCACGTCGTCTGGCATCAATGTAGCCGGTGCCATTCGT
GTAGCCAAACAACTCGGTGGCGGACACAACATCGTGACGGTGCTGTGCGA
CGAGGGCACGCGTTACACGGACAAAATGTTCAACCTGCAGTTCCTAAACG
ACAAGAAGCTGCCACAACCGCAGTGGCTGGCGGCCGATCTGTCGGAGCGT
GTGCGCGACGCCGTGGCCAAAGCCACCATCGACGACGAACAAGCGGCGCA
GGAACAAAAGGCCAACGCGGCCAAGCTGGCGACGGCGCACTGA
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