Ggra8769.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8769.t1
Unique NameGgra8769.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length172
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:77098..77680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog321327.CYA_0587
PFAMsNTP_transf_9
Max annot lvl1117|Cyanobacteria
Evalue6.1e-10
EggNOG OGsCOG2343@1|root,COG2343@2|Bacteria,1G7U6@1117|Cyanobacteria,1H0SQ@1129|Synechococcus
Descriptionprotein conserved in bacteria
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8769Ggra8769Gracilaria gracilis GNS1m malegenetig00000860_pilon 77098..77680 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8769.t1Ggra8769.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 77098..77680 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8769.t1.start1Ggra8769.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 77098..77100 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8769.t1.CDS1Ggra8769.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 77098..77334 +
Ggra8769.t1.CDS2Ggra8769.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 77402..77680 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8769.t1.exon1Ggra8769.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 77098..77334 +
Ggra8769.t1.exon2Ggra8769.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 77402..77680 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8769.t1.intron1Ggra8769.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 77335..77401 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8769.t1.stop1Ggra8769.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 77678..77680 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8769.t1 ID=Ggra8769.t1|Name=Ggra8769.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=172bp
MDEAHCAFAQFHFAPRCDKVRTTSTLARTLPPTCAQRQTSNGKRQKRPRG
RPSERSNRARRSIQAIWSGQVIAEGNGYEFMDGRFFFPAESVRWELVEKS
DKTKHHNPVGKLGVHDVVIRTGNSEHVVRNRGAVLSFQNLKRPFEKLEGY
TFFWKGVQIVGLNESKEQCKD*
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spliced messenger RNA

>Ggra8769.t1 ID=Ggra8769.t1|Name=Ggra8769.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=516bp|location=Sequence derived from alignment at tig00000860_pilon:77098..77680+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGAAGCGCATTGCGCTTTCGCGCAGTTCCACTTTGCACCTCGGTG
CGACAAAGTGCGTACGACTTCAACGCTGGCGCGGACGCTGCCGCCCACCT
GCGCGCAACGACAAACCAGCAACGGAAAGCGCCAGAAGAGGCCTCGGGGA
CGCCCGTCTGAGAGGAGCAACAGAGCGAGGCGCTCGATCCAGGCCATCTG
GAGCGGGCAGGTAATTGCCGAAGGGAATGGATATGAATTCATGGATGGGC
GCTTCTTCTTCCCCGCTGAGAGTGTGAGATGGGAGCTTGTTGAGAAGAGT
GACAAAACTAAACATCACAACCCCGTGGGAAAACTGGGAGTTCACGATGT
TGTGATCCGTACTGGCAACAGCGAGCACGTTGTTAGAAACCGTGGCGCTG
TGTTGTCGTTTCAAAATCTGAAACGCCCTTTCGAGAAACTTGAGGGATAC
ACTTTCTTTTGGAAGGGGGTGCAGATTGTGGGATTGAATGAGAGCAAGGA
GCAATGCAAAGACTGA
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protein sequence of Ggra8769.t1

>Ggra8769.t1 ID=Ggra8769.t1|Name=Ggra8769.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=172bp
MDEAHCAFAQFHFAPRCDKVRTTSTLARTLPPTCAQRQTSNGKRQKRPRG
RPSERSNRARRSIQAIWSGQVIAEGNGYEFMDGRFFFPAESVRWELVEKS
DKTKHHNPVGKLGVHDVVIRTGNSEHVVRNRGAVLSFQNLKRPFEKLEGY
TFFWKGVQIVGLNESKEQCKD*
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mRNA from alignment at tig00000860_pilon:77098..77680+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8769.t1 ID=Ggra8769.t1|Name=Ggra8769.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=583bp|location=Sequence derived from alignment at tig00000860_pilon:77098..77680+ (Gracilaria gracilis GNS1m male)
ATGGACGAAGCGCATTGCGCTTTCGCGCAGTTCCACTTTGCACCTCGGTG
CGACAAAGTGCGTACGACTTCAACGCTGGCGCGGACGCTGCCGCCCACCT
GCGCGCAACGACAAACCAGCAACGGAAAGCGCCAGAAGAGGCCTCGGGGA
CGCCCGTCTGAGAGGAGCAACAGAGCGAGGCGCTCGATCCAGGCCATCTG
GAGCGGGCAGGTAATTGCCGAAGGGAATGGATATGAAGTACGTCACTCAA
ACCCAACCTGAAGCGCGGCCGTGACGCAAATCGAACAGTTGTTGACTGGC
GTAGTTCATGGATGGGCGCTTCTTCTTCCCCGCTGAGAGTGTGAGATGGG
AGCTTGTTGAGAAGAGTGACAAAACTAAACATCACAACCCCGTGGGAAAA
CTGGGAGTTCACGATGTTGTGATCCGTACTGGCAACAGCGAGCACGTTGT
TAGAAACCGTGGCGCTGTGTTGTCGTTTCAAAATCTGAAACGCCCTTTCG
AGAAACTTGAGGGATACACTTTCTTTTGGAAGGGGGTGCAGATTGTGGGA
TTGAATGAGAGCAAGGAGCAATGCAAAGACTGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:77098..77680+

>Ggra8769.t1 ID=Ggra8769.t1|Name=Ggra8769.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=516bp|location=Sequence derived from alignment at tig00000860_pilon:77098..77680+ (Gracilaria gracilis GNS1m male)
ATGGACGAAGCGCATTGCGCTTTCGCGCAGTTCCACTTTGCACCTCGGTG
CGACAAAGTGCGTACGACTTCAACGCTGGCGCGGACGCTGCCGCCCACCT
GCGCGCAACGACAAACCAGCAACGGAAAGCGCCAGAAGAGGCCTCGGGGA
CGCCCGTCTGAGAGGAGCAACAGAGCGAGGCGCTCGATCCAGGCCATCTG
GAGCGGGCAGGTAATTGCCGAAGGGAATGGATATGAATTCATGGATGGGC
GCTTCTTCTTCCCCGCTGAGAGTGTGAGATGGGAGCTTGTTGAGAAGAGT
GACAAAACTAAACATCACAACCCCGTGGGAAAACTGGGAGTTCACGATGT
TGTGATCCGTACTGGCAACAGCGAGCACGTTGTTAGAAACCGTGGCGCTG
TGTTGTCGTTTCAAAATCTGAAACGCCCTTTCGAGAAACTTGAGGGATAC
ACTTTCTTTTGGAAGGGGGTGCAGATTGTGGGATTGAATGAGAGCAAGGA
GCAATGCAAAGACTGA
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