Ggra8765.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8765.t1
Unique NameGgra8765.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length189
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:71382..71948 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4558.Sb04g029050.1
PFAMszf-RING_2
Max annot lvl35493|Streptophyta
Evalue7.13e-10
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota,387TP@33090|Viridiplantae,3GT77@35493|Streptophyta,3M7N1@4447|Liliopsida,3IR3D@38820|Poales
DescriptionAnaphase-promoting complex subunit 11 RING-H2 finger
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8765Ggra8765Gracilaria gracilis GNS1m malegenetig00000860_pilon 71382..71948 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8765.t1.stop1Ggra8765.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 71382..71384 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8765.t1.CDS1Ggra8765.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 71382..71948 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8765.t1.exon1Ggra8765.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 71382..71948 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8765.t1.start1Ggra8765.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 71946..71948 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8765.t1Ggra8765.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 71382..71948 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8765.t1 ID=Ggra8765.t1|Name=Ggra8765.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=189bp
MPTWSVAFISVCGVLFVLIVAFTARAIYRHLSQALYSPPRSEGVCVTQPP
PSLRAVCTPHSAAPLSDDKIDMVAPRCDKPPRRSCVCSICLDVIQRAQSA
RVIASCGHIFHSSCVKSWLRRSNECPSCQREALLEETVKHLLDLHAKRAH
AHARPSIADRLRRSGSFASHGAPAAAAPPPPPPTPSRR*
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spliced messenger RNA

>Ggra8765.t1 ID=Ggra8765.t1|Name=Ggra8765.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=567bp|location=Sequence derived from alignment at tig00000860_pilon:71382..71948- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGACGTGGAGCGTAGCGTTTATTTCCGTGTGTGGCGTGTTGTTTGT
GCTCATCGTCGCCTTCACCGCGCGCGCCATCTACCGCCACCTGTCGCAGG
CGTTATACTCGCCGCCGCGTTCGGAAGGCGTTTGCGTCACGCAGCCGCCG
CCCTCACTGCGCGCCGTGTGCACGCCGCACAGCGCCGCGCCGCTCTCCGA
CGACAAGATCGACATGGTGGCGCCGCGCTGCGACAAGCCGCCGCGCCGCA
GCTGCGTGTGCTCCATCTGTCTGGACGTGATTCAGCGCGCGCAATCCGCG
CGCGTCATCGCGTCGTGCGGCCACATCTTCCACTCCTCGTGCGTCAAGTC
GTGGCTGCGCCGCAGCAACGAGTGCCCCAGCTGCCAGCGCGAGGCGCTGC
TGGAGGAAACCGTCAAGCACCTGCTCGATCTGCACGCCAAGCGCGCGCAC
GCGCACGCGCGCCCCTCCATCGCCGATCGGCTGCGCCGCAGCGGCTCGTT
CGCGTCGCACGGCGCCCCGGCCGCCGCCGCGCCGCCGCCGCCGCCGCCGA
CGCCGTCAAGACGTTGA
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protein sequence of Ggra8765.t1

>Ggra8765.t1 ID=Ggra8765.t1|Name=Ggra8765.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=189bp
MPTWSVAFISVCGVLFVLIVAFTARAIYRHLSQALYSPPRSEGVCVTQPP
PSLRAVCTPHSAAPLSDDKIDMVAPRCDKPPRRSCVCSICLDVIQRAQSA
RVIASCGHIFHSSCVKSWLRRSNECPSCQREALLEETVKHLLDLHAKRAH
AHARPSIADRLRRSGSFASHGAPAAAAPPPPPPTPSRR*
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mRNA from alignment at tig00000860_pilon:71382..71948-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8765.t1 ID=Ggra8765.t1|Name=Ggra8765.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=567bp|location=Sequence derived from alignment at tig00000860_pilon:71382..71948- (Gracilaria gracilis GNS1m male)
ATGCCGACGTGGAGCGTAGCGTTTATTTCCGTGTGTGGCGTGTTGTTTGT
GCTCATCGTCGCCTTCACCGCGCGCGCCATCTACCGCCACCTGTCGCAGG
CGTTATACTCGCCGCCGCGTTCGGAAGGCGTTTGCGTCACGCAGCCGCCG
CCCTCACTGCGCGCCGTGTGCACGCCGCACAGCGCCGCGCCGCTCTCCGA
CGACAAGATCGACATGGTGGCGCCGCGCTGCGACAAGCCGCCGCGCCGCA
GCTGCGTGTGCTCCATCTGTCTGGACGTGATTCAGCGCGCGCAATCCGCG
CGCGTCATCGCGTCGTGCGGCCACATCTTCCACTCCTCGTGCGTCAAGTC
GTGGCTGCGCCGCAGCAACGAGTGCCCCAGCTGCCAGCGCGAGGCGCTGC
TGGAGGAAACCGTCAAGCACCTGCTCGATCTGCACGCCAAGCGCGCGCAC
GCGCACGCGCGCCCCTCCATCGCCGATCGGCTGCGCCGCAGCGGCTCGTT
CGCGTCGCACGGCGCCCCGGCCGCCGCCGCGCCGCCGCCGCCGCCGCCGA
CGCCGTCAAGACGTTGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:71382..71948-

>Ggra8765.t1 ID=Ggra8765.t1|Name=Ggra8765.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=567bp|location=Sequence derived from alignment at tig00000860_pilon:71382..71948- (Gracilaria gracilis GNS1m male)
ATGCCGACGTGGAGCGTAGCGTTTATTTCCGTGTGTGGCGTGTTGTTTGT
GCTCATCGTCGCCTTCACCGCGCGCGCCATCTACCGCCACCTGTCGCAGG
CGTTATACTCGCCGCCGCGTTCGGAAGGCGTTTGCGTCACGCAGCCGCCG
CCCTCACTGCGCGCCGTGTGCACGCCGCACAGCGCCGCGCCGCTCTCCGA
CGACAAGATCGACATGGTGGCGCCGCGCTGCGACAAGCCGCCGCGCCGCA
GCTGCGTGTGCTCCATCTGTCTGGACGTGATTCAGCGCGCGCAATCCGCG
CGCGTCATCGCGTCGTGCGGCCACATCTTCCACTCCTCGTGCGTCAAGTC
GTGGCTGCGCCGCAGCAACGAGTGCCCCAGCTGCCAGCGCGAGGCGCTGC
TGGAGGAAACCGTCAAGCACCTGCTCGATCTGCACGCCAAGCGCGCGCAC
GCGCACGCGCGCCCCTCCATCGCCGATCGGCTGCGCCGCAGCGGCTCGTT
CGCGTCGCACGGCGCCCCGGCCGCCGCCGCGCCGCCGCCGCCGCCGCCGA
CGCCGTCAAGACGTTGA
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