Ggra8763.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8763.t1
Unique NameGgra8763.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length195
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:66446..67030 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog325452.fgenesh_scip_prom.46568.1564
PFAMsHD_3
Max annot lvl4776|Peronosporales
KEGG koko:K07023
Evalue8.32e-53
EggNOG OGsCOG1896@1|root,KOG3197@2759|Eukaryota,3QBPM@4776|Peronosporales
DescriptionHD domain
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8763Ggra8763Gracilaria gracilis GNS1m malegenetig00000860_pilon 66446..67030 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8763.t1.stop1Ggra8763.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 66446..66448 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8763.t1.CDS1Ggra8763.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 66446..67030 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8763.t1.exon1Ggra8763.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 66446..67030 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8763.t1.start1Ggra8763.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 67028..67030 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8763.t1Ggra8763.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 66446..67030 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8763.t1 ID=Ggra8763.t1|Name=Ggra8763.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=195bp
MSTPQTSQNMLDFFRLIGRLKTTKRTGWVRSNVNLPESISDHMYRMALIA
FALPHQNRDHLIRMALVHDLAESIVGDITPHDNVSKEQKRQMEDEAMRHI
RDDILSGSKAGVDMYELWKEYEDGITEEAKLMKDIDKFEMILQADEYERA
QGIRLQEFFDSTRDVFTTKTMTELDTELRKDRNRDDVAQAEPSE*
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spliced messenger RNA

>Ggra8763.t1 ID=Ggra8763.t1|Name=Ggra8763.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=585bp|location=Sequence derived from alignment at tig00000860_pilon:66446..67030- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCACTCCTCAAACTTCGCAGAATATGTTGGACTTCTTTCGCCTGAT
CGGCCGTTTGAAGACCACAAAAAGAACGGGATGGGTCCGCAGCAACGTCA
ACCTACCAGAATCCATTTCAGATCATATGTATCGTATGGCCCTGATAGCA
TTCGCTCTACCGCATCAAAACCGTGACCACTTGATCCGAATGGCTTTGGT
GCACGATCTCGCAGAGTCCATCGTCGGCGATATAACGCCTCATGATAACG
TCTCAAAAGAACAGAAACGCCAAATGGAAGATGAAGCAATGCGTCATATC
CGTGATGACATTCTGAGCGGGAGCAAAGCTGGAGTCGACATGTACGAGTT
GTGGAAAGAGTATGAAGATGGTATCACGGAGGAGGCAAAGCTCATGAAGG
ACATTGACAAGTTCGAAATGATTTTGCAAGCAGACGAGTACGAACGTGCC
CAAGGCATTCGACTTCAAGAGTTCTTTGATAGTACAAGAGATGTGTTTAC
AACGAAAACCATGACCGAACTAGACACAGAACTTCGTAAAGATCGAAATC
GTGACGATGTCGCTCAAGCAGAACCAAGCGAATAA
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protein sequence of Ggra8763.t1

>Ggra8763.t1 ID=Ggra8763.t1|Name=Ggra8763.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=195bp
MSTPQTSQNMLDFFRLIGRLKTTKRTGWVRSNVNLPESISDHMYRMALIA
FALPHQNRDHLIRMALVHDLAESIVGDITPHDNVSKEQKRQMEDEAMRHI
RDDILSGSKAGVDMYELWKEYEDGITEEAKLMKDIDKFEMILQADEYERA
QGIRLQEFFDSTRDVFTTKTMTELDTELRKDRNRDDVAQAEPSE*
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mRNA from alignment at tig00000860_pilon:66446..67030-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8763.t1 ID=Ggra8763.t1|Name=Ggra8763.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=585bp|location=Sequence derived from alignment at tig00000860_pilon:66446..67030- (Gracilaria gracilis GNS1m male)
ATGAGCACTCCTCAAACTTCGCAGAATATGTTGGACTTCTTTCGCCTGAT
CGGCCGTTTGAAGACCACAAAAAGAACGGGATGGGTCCGCAGCAACGTCA
ACCTACCAGAATCCATTTCAGATCATATGTATCGTATGGCCCTGATAGCA
TTCGCTCTACCGCATCAAAACCGTGACCACTTGATCCGAATGGCTTTGGT
GCACGATCTCGCAGAGTCCATCGTCGGCGATATAACGCCTCATGATAACG
TCTCAAAAGAACAGAAACGCCAAATGGAAGATGAAGCAATGCGTCATATC
CGTGATGACATTCTGAGCGGGAGCAAAGCTGGAGTCGACATGTACGAGTT
GTGGAAAGAGTATGAAGATGGTATCACGGAGGAGGCAAAGCTCATGAAGG
ACATTGACAAGTTCGAAATGATTTTGCAAGCAGACGAGTACGAACGTGCC
CAAGGCATTCGACTTCAAGAGTTCTTTGATAGTACAAGAGATGTGTTTAC
AACGAAAACCATGACCGAACTAGACACAGAACTTCGTAAAGATCGAAATC
GTGACGATGTCGCTCAAGCAGAACCAAGCGAATAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:66446..67030-

>Ggra8763.t1 ID=Ggra8763.t1|Name=Ggra8763.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=585bp|location=Sequence derived from alignment at tig00000860_pilon:66446..67030- (Gracilaria gracilis GNS1m male)
ATGAGCACTCCTCAAACTTCGCAGAATATGTTGGACTTCTTTCGCCTGAT
CGGCCGTTTGAAGACCACAAAAAGAACGGGATGGGTCCGCAGCAACGTCA
ACCTACCAGAATCCATTTCAGATCATATGTATCGTATGGCCCTGATAGCA
TTCGCTCTACCGCATCAAAACCGTGACCACTTGATCCGAATGGCTTTGGT
GCACGATCTCGCAGAGTCCATCGTCGGCGATATAACGCCTCATGATAACG
TCTCAAAAGAACAGAAACGCCAAATGGAAGATGAAGCAATGCGTCATATC
CGTGATGACATTCTGAGCGGGAGCAAAGCTGGAGTCGACATGTACGAGTT
GTGGAAAGAGTATGAAGATGGTATCACGGAGGAGGCAAAGCTCATGAAGG
ACATTGACAAGTTCGAAATGATTTTGCAAGCAGACGAGTACGAACGTGCC
CAAGGCATTCGACTTCAAGAGTTCTTTGATAGTACAAGAGATGTGTTTAC
AACGAAAACCATGACCGAACTAGACACAGAACTTCGTAAAGATCGAAATC
GTGACGATGTCGCTCAAGCAGAACCAAGCGAATAA
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