Ggra8762.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8762.t1
Unique NameGgra8762.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length170
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:65813..66322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8762Ggra8762Gracilaria gracilis GNS1m malegenetig00000860_pilon 65813..66322 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8762.t1.start1Ggra8762.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 65813..65815 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8762.t1.CDS1Ggra8762.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 65813..66322 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8762.t1.exon1Ggra8762.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 65813..66322 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8762.t1.stop1Ggra8762.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 66320..66322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8762.t1Ggra8762.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 65813..66322 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8762.t1 ID=Ggra8762.t1|Name=Ggra8762.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=170bp
MQTDLAALELRLHRLETLVGESSCKGDLLKRLKHVQRELREKVPDEMEAA
FKTVALLSSVGTLPATRAARMEKLNLLEKNLDQADAYVTEFDALQHALDR
PFDLEKLNREALATLENRVCKVSSDIAEEERNVDTLLMEFNKVTERLNDT
MLRMAHVLQSQTPTNKERT*
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spliced messenger RNA

>Ggra8762.t1 ID=Ggra8762.t1|Name=Ggra8762.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=510bp|location=Sequence derived from alignment at tig00000860_pilon:65813..66322+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAACGGATTTGGCCGCTCTTGAGCTCCGTCTGCATCGTTTGGAGAC
TCTAGTCGGGGAATCATCGTGCAAGGGGGATTTACTTAAACGGCTGAAAC
ACGTACAAAGGGAGCTGCGAGAAAAGGTGCCCGACGAAATGGAAGCTGCA
TTTAAGACCGTCGCCCTCCTTTCTTCTGTCGGTACGTTGCCAGCTACGAG
AGCAGCAAGGATGGAAAAGCTCAACCTCCTTGAAAAGAATCTAGACCAGG
CAGACGCGTATGTCACGGAATTCGATGCACTGCAGCACGCCCTAGATAGG
CCTTTTGACCTAGAGAAGTTGAACAGAGAAGCACTTGCAACGCTTGAAAA
TCGCGTATGTAAGGTTTCCAGTGATATCGCTGAGGAAGAGCGTAATGTTG
ACACACTTCTCATGGAGTTCAACAAGGTTACAGAGAGGCTGAACGACACT
ATGTTGCGCATGGCCCATGTTCTTCAATCACAAACGCCTACGAATAAGGA
ACGAACATGA
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protein sequence of Ggra8762.t1

>Ggra8762.t1 ID=Ggra8762.t1|Name=Ggra8762.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=170bp
MQTDLAALELRLHRLETLVGESSCKGDLLKRLKHVQRELREKVPDEMEAA
FKTVALLSSVGTLPATRAARMEKLNLLEKNLDQADAYVTEFDALQHALDR
PFDLEKLNREALATLENRVCKVSSDIAEEERNVDTLLMEFNKVTERLNDT
MLRMAHVLQSQTPTNKERT*
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mRNA from alignment at tig00000860_pilon:65813..66322+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8762.t1 ID=Ggra8762.t1|Name=Ggra8762.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=510bp|location=Sequence derived from alignment at tig00000860_pilon:65813..66322+ (Gracilaria gracilis GNS1m male)
ATGCAAACGGATTTGGCCGCTCTTGAGCTCCGTCTGCATCGTTTGGAGAC
TCTAGTCGGGGAATCATCGTGCAAGGGGGATTTACTTAAACGGCTGAAAC
ACGTACAAAGGGAGCTGCGAGAAAAGGTGCCCGACGAAATGGAAGCTGCA
TTTAAGACCGTCGCCCTCCTTTCTTCTGTCGGTACGTTGCCAGCTACGAG
AGCAGCAAGGATGGAAAAGCTCAACCTCCTTGAAAAGAATCTAGACCAGG
CAGACGCGTATGTCACGGAATTCGATGCACTGCAGCACGCCCTAGATAGG
CCTTTTGACCTAGAGAAGTTGAACAGAGAAGCACTTGCAACGCTTGAAAA
TCGCGTATGTAAGGTTTCCAGTGATATCGCTGAGGAAGAGCGTAATGTTG
ACACACTTCTCATGGAGTTCAACAAGGTTACAGAGAGGCTGAACGACACT
ATGTTGCGCATGGCCCATGTTCTTCAATCACAAACGCCTACGAATAAGGA
ACGAACATGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:65813..66322+

>Ggra8762.t1 ID=Ggra8762.t1|Name=Ggra8762.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=510bp|location=Sequence derived from alignment at tig00000860_pilon:65813..66322+ (Gracilaria gracilis GNS1m male)
ATGCAAACGGATTTGGCCGCTCTTGAGCTCCGTCTGCATCGTTTGGAGAC
TCTAGTCGGGGAATCATCGTGCAAGGGGGATTTACTTAAACGGCTGAAAC
ACGTACAAAGGGAGCTGCGAGAAAAGGTGCCCGACGAAATGGAAGCTGCA
TTTAAGACCGTCGCCCTCCTTTCTTCTGTCGGTACGTTGCCAGCTACGAG
AGCAGCAAGGATGGAAAAGCTCAACCTCCTTGAAAAGAATCTAGACCAGG
CAGACGCGTATGTCACGGAATTCGATGCACTGCAGCACGCCCTAGATAGG
CCTTTTGACCTAGAGAAGTTGAACAGAGAAGCACTTGCAACGCTTGAAAA
TCGCGTATGTAAGGTTTCCAGTGATATCGCTGAGGAAGAGCGTAATGTTG
ACACACTTCTCATGGAGTTCAACAAGGTTACAGAGAGGCTGAACGACACT
ATGTTGCGCATGGCCCATGTTCTTCAATCACAAACGCCTACGAATAAGGA
ACGAACATGA
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