Ggra8761.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8761.t1
Unique NameGgra8761.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length382
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:63873..65018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10160.XP_004644652.1
Preferred nameUSP17L2
PFAMsHABP4_PAI-RBP1,UCH
Max annot lvl33208|Metazoa
KEGG koko:K11845
GOsGO:0000075,GO:0000278,GO:0001817,GO:0001819,GO:0002682,GO:0002684,GO:0002697,GO:0002699,GO:0002831,GO:0002833,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004843,GO:0005488,GO:0005539,GO:0005540,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007049,GO:0007093,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009057,GO:0009892,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0010639,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0010955,GO:0012505,GO:0016020,GO:0016485,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0019941,GO:0022402,GO:0023051,GO:0023056,GO:0030162,GO:0030163,GO:0030334,GO:0031056,GO:0031057,GO:0031063,GO:0031064,GO:0031323,GO:0031324,GO:0031344,GO:0031347,GO:0031349,GO:0031399,GO:0031400,GO:0031406,GO:0031974,GO:0031981,GO:0031984,GO:0032101,GO:0032103,GO:0032268,GO:0032269,GO:0032386,GO:0032387,GO:0032879,GO:0032880,GO:0033043,GO:0033044,GO:0033157,GO:0034260,GO:0036094,GO:0036211,GO:0036459,GO:0039531,GO:0039533,GO:0039535,GO:0040012,GO:0042127,GO:0042175,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043086,GO:0043087,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043547,GO:0043632,GO:0043900,GO:0043902,GO:0044087,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0045786,GO:0045861,GO:0045930,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050688,GO:0050691,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0051049,GO:0051051,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051223,GO:0051224,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051270,GO:0051336,GO:0051345,GO:0051346,GO:0051603,GO:0051604,GO:0051726,GO:0060255,GO:0060341,GO:0060491,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0070201,GO:0070536,GO:0070613,GO:0070646,GO:0070647,GO:0071108,GO:0071586,GO:0071704,GO:0071947,GO:0080090,GO:0080120,GO:0080134,GO:0090087,GO:0090311,GO:0090313,GO:0090315,GO:0090317,GO:0097159,GO:0097367,GO:0098827,GO:0101005,GO:0120032,GO:0120035,GO:0140096,GO:1900027,GO:1900245,GO:1900246,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1902275,GO:1902531,GO:1902533,GO:1903047,GO:1903317,GO:1903318,GO:1903533,GO:1903827,GO:1903828,GO:1904035,GO:1904037,GO:1904950,GO:1905268,GO:1905475,GO:1905476,GO:2000145,GO:2001251
Evalue4.04e-05
EggNOG OGsKOG1865@1|root,KOG1865@2759|Eukaryota,3AH6C@33154|Opisthokonta,3BYUE@33208|Metazoa,3D5I1@33213|Bilateria,48DC4@7711|Chordata,490MA@7742|Vertebrata,3J6R1@40674|Mammalia,35IRI@314146|Euarchontoglires,4PWVX@9989|Rodentia
EC3.4.19.12
Descriptionubiquitin carboxyl-terminal hydrolase
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8761Ggra8761Gracilaria gracilis GNS1m malegenetig00000860_pilon 63873..65018 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8761.t1.start1Ggra8761.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 63873..63875 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8761.t1.CDS1Ggra8761.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 63873..65018 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8761.t1.exon1Ggra8761.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 63873..65018 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8761.t1.stop1Ggra8761.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 65016..65018 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8761.t1Ggra8761.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 63873..65018 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8761.t1 ID=Ggra8761.t1|Name=Ggra8761.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=382bp
MLLDRSLLIVAPRFAGSYLDDMPLDSYSPWKRRPTKRKRRTVPFKQPRGL
WNTGQSCHLGATISALSALSCIRAWVMNQPALWRPPMSTLADYLLQAASS
KHNGGGLDPRPILALLETSGWKSRYAQDAHESMLRVLELIQDAINSSPRE
RRHGPTFRMNKSTQTPPLCVGRTQMAMDLQREELPPYLSTTASWNHCFSC
GYTSPVTLTDSPMILVPVTERSKPLASLVTNAMYSRTRVDMYCDGCAQSC
THLHCSEVWRLPRALIILLQRASYGLRGVSITRSPVWFYKYINITRPYRG
DNHGEVCYALRSVVRYAGSASGHRSHYDCILRAPESSVKGIDCVDSSSRW
WHVDDDHITRSSVQSACDTSHLYLLMFEMET*
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spliced messenger RNA

>Ggra8761.t1 ID=Ggra8761.t1|Name=Ggra8761.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1146bp|location=Sequence derived from alignment at tig00000860_pilon:63873..65018+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCTTGATCGTTCGCTGCTCATCGTTGCACCGCGTTTTGCCGGCAG
CTACCTGGACGACATGCCCTTGGACTCCTACTCGCCATGGAAACGCCGCC
CAACTAAACGCAAGAGGAGAACAGTTCCATTCAAGCAGCCACGAGGGCTG
TGGAACACCGGTCAATCCTGCCACCTTGGTGCAACCATCTCTGCGCTATC
TGCTCTGTCTTGCATCAGGGCGTGGGTCATGAACCAGCCTGCATTGTGGC
GACCACCCATGTCCACCTTGGCAGACTACCTTTTGCAAGCAGCCAGCTCG
AAACACAACGGCGGTGGATTGGACCCCCGACCTATACTGGCTCTCTTGGA
AACGTCGGGCTGGAAATCTCGCTACGCTCAGGACGCACATGAGAGCATGC
TACGTGTGTTGGAGCTCATTCAAGACGCCATAAACTCATCTCCGCGCGAA
CGACGTCACGGCCCGACATTTCGAATGAACAAAAGCACGCAAACGCCACC
ACTTTGCGTCGGACGCACACAAATGGCGATGGACTTGCAGCGAGAAGAGC
TTCCTCCTTACCTTTCAACCACGGCTTCATGGAACCATTGCTTCAGTTGT
GGGTACACTTCGCCCGTTACGCTCACGGACAGTCCGATGATTCTCGTGCC
TGTTACAGAGCGTTCCAAACCATTGGCTTCTCTCGTGACGAACGCCATGT
ATTCTAGAACGCGCGTGGACATGTATTGCGACGGCTGTGCTCAAAGCTGT
ACACATCTTCACTGTTCCGAAGTGTGGCGGCTACCGCGAGCACTCATAAT
ACTCTTGCAGCGGGCCTCGTATGGGTTGCGAGGCGTGTCAATAACAAGGT
CGCCAGTATGGTTTTACAAGTATATAAACATTACACGTCCATACCGAGGG
GACAATCATGGCGAAGTTTGTTATGCCTTGAGAAGCGTCGTTCGTTATGC
AGGTAGTGCGAGTGGGCACAGGAGTCATTATGACTGCATTCTTAGAGCGC
CTGAGAGCAGCGTGAAAGGAATCGATTGCGTCGACTCAAGTAGTAGATGG
TGGCATGTGGATGACGATCACATTACGCGCTCCTCCGTGCAAAGTGCATG
CGACACAAGCCATCTTTATCTGCTCATGTTTGAGATGGAAACGTAA
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protein sequence of Ggra8761.t1

>Ggra8761.t1 ID=Ggra8761.t1|Name=Ggra8761.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=382bp
MLLDRSLLIVAPRFAGSYLDDMPLDSYSPWKRRPTKRKRRTVPFKQPRGL
WNTGQSCHLGATISALSALSCIRAWVMNQPALWRPPMSTLADYLLQAASS
KHNGGGLDPRPILALLETSGWKSRYAQDAHESMLRVLELIQDAINSSPRE
RRHGPTFRMNKSTQTPPLCVGRTQMAMDLQREELPPYLSTTASWNHCFSC
GYTSPVTLTDSPMILVPVTERSKPLASLVTNAMYSRTRVDMYCDGCAQSC
THLHCSEVWRLPRALIILLQRASYGLRGVSITRSPVWFYKYINITRPYRG
DNHGEVCYALRSVVRYAGSASGHRSHYDCILRAPESSVKGIDCVDSSSRW
WHVDDDHITRSSVQSACDTSHLYLLMFEMET*
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mRNA from alignment at tig00000860_pilon:63873..65018+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8761.t1 ID=Ggra8761.t1|Name=Ggra8761.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1146bp|location=Sequence derived from alignment at tig00000860_pilon:63873..65018+ (Gracilaria gracilis GNS1m male)
ATGCTTCTTGATCGTTCGCTGCTCATCGTTGCACCGCGTTTTGCCGGCAG
CTACCTGGACGACATGCCCTTGGACTCCTACTCGCCATGGAAACGCCGCC
CAACTAAACGCAAGAGGAGAACAGTTCCATTCAAGCAGCCACGAGGGCTG
TGGAACACCGGTCAATCCTGCCACCTTGGTGCAACCATCTCTGCGCTATC
TGCTCTGTCTTGCATCAGGGCGTGGGTCATGAACCAGCCTGCATTGTGGC
GACCACCCATGTCCACCTTGGCAGACTACCTTTTGCAAGCAGCCAGCTCG
AAACACAACGGCGGTGGATTGGACCCCCGACCTATACTGGCTCTCTTGGA
AACGTCGGGCTGGAAATCTCGCTACGCTCAGGACGCACATGAGAGCATGC
TACGTGTGTTGGAGCTCATTCAAGACGCCATAAACTCATCTCCGCGCGAA
CGACGTCACGGCCCGACATTTCGAATGAACAAAAGCACGCAAACGCCACC
ACTTTGCGTCGGACGCACACAAATGGCGATGGACTTGCAGCGAGAAGAGC
TTCCTCCTTACCTTTCAACCACGGCTTCATGGAACCATTGCTTCAGTTGT
GGGTACACTTCGCCCGTTACGCTCACGGACAGTCCGATGATTCTCGTGCC
TGTTACAGAGCGTTCCAAACCATTGGCTTCTCTCGTGACGAACGCCATGT
ATTCTAGAACGCGCGTGGACATGTATTGCGACGGCTGTGCTCAAAGCTGT
ACACATCTTCACTGTTCCGAAGTGTGGCGGCTACCGCGAGCACTCATAAT
ACTCTTGCAGCGGGCCTCGTATGGGTTGCGAGGCGTGTCAATAACAAGGT
CGCCAGTATGGTTTTACAAGTATATAAACATTACACGTCCATACCGAGGG
GACAATCATGGCGAAGTTTGTTATGCCTTGAGAAGCGTCGTTCGTTATGC
AGGTAGTGCGAGTGGGCACAGGAGTCATTATGACTGCATTCTTAGAGCGC
CTGAGAGCAGCGTGAAAGGAATCGATTGCGTCGACTCAAGTAGTAGATGG
TGGCATGTGGATGACGATCACATTACGCGCTCCTCCGTGCAAAGTGCATG
CGACACAAGCCATCTTTATCTGCTCATGTTTGAGATGGAAACGTAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:63873..65018+

>Ggra8761.t1 ID=Ggra8761.t1|Name=Ggra8761.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1146bp|location=Sequence derived from alignment at tig00000860_pilon:63873..65018+ (Gracilaria gracilis GNS1m male)
ATGCTTCTTGATCGTTCGCTGCTCATCGTTGCACCGCGTTTTGCCGGCAG
CTACCTGGACGACATGCCCTTGGACTCCTACTCGCCATGGAAACGCCGCC
CAACTAAACGCAAGAGGAGAACAGTTCCATTCAAGCAGCCACGAGGGCTG
TGGAACACCGGTCAATCCTGCCACCTTGGTGCAACCATCTCTGCGCTATC
TGCTCTGTCTTGCATCAGGGCGTGGGTCATGAACCAGCCTGCATTGTGGC
GACCACCCATGTCCACCTTGGCAGACTACCTTTTGCAAGCAGCCAGCTCG
AAACACAACGGCGGTGGATTGGACCCCCGACCTATACTGGCTCTCTTGGA
AACGTCGGGCTGGAAATCTCGCTACGCTCAGGACGCACATGAGAGCATGC
TACGTGTGTTGGAGCTCATTCAAGACGCCATAAACTCATCTCCGCGCGAA
CGACGTCACGGCCCGACATTTCGAATGAACAAAAGCACGCAAACGCCACC
ACTTTGCGTCGGACGCACACAAATGGCGATGGACTTGCAGCGAGAAGAGC
TTCCTCCTTACCTTTCAACCACGGCTTCATGGAACCATTGCTTCAGTTGT
GGGTACACTTCGCCCGTTACGCTCACGGACAGTCCGATGATTCTCGTGCC
TGTTACAGAGCGTTCCAAACCATTGGCTTCTCTCGTGACGAACGCCATGT
ATTCTAGAACGCGCGTGGACATGTATTGCGACGGCTGTGCTCAAAGCTGT
ACACATCTTCACTGTTCCGAAGTGTGGCGGCTACCGCGAGCACTCATAAT
ACTCTTGCAGCGGGCCTCGTATGGGTTGCGAGGCGTGTCAATAACAAGGT
CGCCAGTATGGTTTTACAAGTATATAAACATTACACGTCCATACCGAGGG
GACAATCATGGCGAAGTTTGTTATGCCTTGAGAAGCGTCGTTCGTTATGC
AGGTAGTGCGAGTGGGCACAGGAGTCATTATGACTGCATTCTTAGAGCGC
CTGAGAGCAGCGTGAAAGGAATCGATTGCGTCGACTCAAGTAGTAGATGG
TGGCATGTGGATGACGATCACATTACGCGCTCCTCCGTGCAAAGTGCATG
CGACACAAGCCATCTTTATCTGCTCATGTTTGAGATGGAAACGTAA
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