Ggra8760.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8760.t1
Unique NameGgra8760.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length294
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:61535..62416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FX50
PFAMsDUF525,UVR
Max annot lvl2759|Eukaryota
KEGG koko:K06195
Evalue4.97e-27
EggNOG OGsCOG2967@1|root,KOG4408@2759|Eukaryota
Descriptionmitochondrion morphogenesis
COG categoryP
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8760Ggra8760Gracilaria gracilis GNS1m malegenetig00000860_pilon 61535..62416 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8760.t1.start1Ggra8760.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 61535..61537 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8760.t1.CDS1Ggra8760.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 61535..62416 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8760.t1.exon1Ggra8760.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 61535..62416 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8760.t1.stop1Ggra8760.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 62414..62416 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8760.t1Ggra8760.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 61535..62416 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8760.t1 ID=Ggra8760.t1|Name=Ggra8760.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=294bp
MAFVSPMVARRARATRRRGATCCAAPPPPPTPPAAGDDGARRPSVAREQL
FKQLQQLQRTLDSAVRRERFADAARLRDRIHALRLSDDYCRTESALAAAV
REQRFADAARLRDALRLLDPPPPSPPPPPPPPLALPSASLPSVSLSSVSL
SSVSLSSSNRICVRAEGYYLPEQSAPAEQRFLFGYRVRITNRSEHVCQLL
ARHWVIATDGNADSHVKGAGVVGRQPVLMPGESFEYTSACPIRVRPRPGQ
TVLGSLRGHYVFCRGDTGHIRFRVDVLPFCFELPAAHRLQQPQ*
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spliced messenger RNA

>Ggra8760.t1 ID=Ggra8760.t1|Name=Ggra8760.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00000860_pilon:61535..62416+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGgcgttcgtgtcgccgatggtggcgcgtcgcgcgcgcgcaacgcgccg
ccgcggcgcgacgtgctgcgcggcgccgccgccgccgcccacgccgccgg
cggcgggcgacgacggcgcgcggcgCCCAAGCGTGGCGCGCGAGCAGCTG
TTCAAGCAGCTGCAGCAGCTGCAACGCACGCTGGACTCCGCCGTGCGCCG
CGAGCGCTTCGCCGACGCCGCGCGCCTGCGCGACCGCATCCACGCGCTGC
GGCTGTCCGACGACTACTGCCGCACCGAGAGCGCGCTGGCTGCCGCCGTG
CGCGAGCAGCGCTTTGCCGACGCGGCGCGCCTGCGCGACGCGCTGCGCCT
GCTCGACCCGCCACCGCCAtcgccgccgccgccgccgcctccgccgctcg
cgctgccgagcgcgtcgctgccgagcgtgtcgctgtcgagcgtgtcgctg
tcgagcgtgtcgctgtcgAGCTCAAACCGTATCTGCGTGCGCGCGGAGGG
CTACTACCTGCCGGAGCAGAGCGCGCCGGCGGAGCAGCGCTTCCTGTTCG
GCTACCGCGTGCGTATCACCAACCGCAGCGAGCACGTTTGCCAGCTGCTG
GCGCGCCACTGGGTTATCGCCACCGACGGCAACGCCGACAGCCACGTCAA
GGGCGCCGGCGTCGTGGGCCGCCAGCCCGTGCTTATGCCCGGCGAGAGCT
TCGAGTACACCTCCGCCTGCCCCATCCGCGTGCGCCCACGCCCCGGTCAG
ACCGTGCTCGGCTCCCTGCGCGGTCACTACGTCTTCTGTCGTGGCGATAC
TGGCCATATTCGATTCCGCGTCGACGTGCTCCCTTTTTGCTTTGAGCTGC
CGGCCGCCCATCGCTTGCAGCAGCCGCAGTGA
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protein sequence of Ggra8760.t1

>Ggra8760.t1 ID=Ggra8760.t1|Name=Ggra8760.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=294bp
MAFVSPMVARRARATRRRGATCCAAPPPPPTPPAAGDDGARRPSVAREQL
FKQLQQLQRTLDSAVRRERFADAARLRDRIHALRLSDDYCRTESALAAAV
REQRFADAARLRDALRLLDPPPPSPPPPPPPPLALPSASLPSVSLSSVSL
SSVSLSSSNRICVRAEGYYLPEQSAPAEQRFLFGYRVRITNRSEHVCQLL
ARHWVIATDGNADSHVKGAGVVGRQPVLMPGESFEYTSACPIRVRPRPGQ
TVLGSLRGHYVFCRGDTGHIRFRVDVLPFCFELPAAHRLQQPQ*
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mRNA from alignment at tig00000860_pilon:61535..62416+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8760.t1 ID=Ggra8760.t1|Name=Ggra8760.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00000860_pilon:61535..62416+ (Gracilaria gracilis GNS1m male)
ATGgcgttcgtgtcgccgatggtggcgcgtcgcgcgcgcgcaacgcgccg
ccgcggcgcgacgtgctgcgcggcgccgccgccgccgcccacgccgccgg
cggcgggcgacgacggcgcgcggcgCCCAAGCGTGGCGCGCGAGCAGCTG
TTCAAGCAGCTGCAGCAGCTGCAACGCACGCTGGACTCCGCCGTGCGCCG
CGAGCGCTTCGCCGACGCCGCGCGCCTGCGCGACCGCATCCACGCGCTGC
GGCTGTCCGACGACTACTGCCGCACCGAGAGCGCGCTGGCTGCCGCCGTG
CGCGAGCAGCGCTTTGCCGACGCGGCGCGCCTGCGCGACGCGCTGCGCCT
GCTCGACCCGCCACCGCCAtcgccgccgccgccgccgcctccgccgctcg
cgctgccgagcgcgtcgctgccgagcgtgtcgctgtcgagcgtgtcgctg
tcgagcgtgtcgctgtcgAGCTCAAACCGTATCTGCGTGCGCGCGGAGGG
CTACTACCTGCCGGAGCAGAGCGCGCCGGCGGAGCAGCGCTTCCTGTTCG
GCTACCGCGTGCGTATCACCAACCGCAGCGAGCACGTTTGCCAGCTGCTG
GCGCGCCACTGGGTTATCGCCACCGACGGCAACGCCGACAGCCACGTCAA
GGGCGCCGGCGTCGTGGGCCGCCAGCCCGTGCTTATGCCCGGCGAGAGCT
TCGAGTACACCTCCGCCTGCCCCATCCGCGTGCGCCCACGCCCCGGTCAG
ACCGTGCTCGGCTCCCTGCGCGGTCACTACGTCTTCTGTCGTGGCGATAC
TGGCCATATTCGATTCCGCGTCGACGTGCTCCCTTTTTGCTTTGAGCTGC
CGGCCGCCCATCGCTTGCAGCAGCCGCAGTGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:61535..62416+

>Ggra8760.t1 ID=Ggra8760.t1|Name=Ggra8760.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=882bp|location=Sequence derived from alignment at tig00000860_pilon:61535..62416+ (Gracilaria gracilis GNS1m male)
ATGgcgttcgtgtcgccgatggtggcgcgtcgcgcgcgcgcaacgcgccg
ccgcggcgcgacgtgctgcgcggcgccgccgccgccgcccacgccgccgg
cggcgggcgacgacggcgcgcggcgCCCAAGCGTGGCGCGCGAGCAGCTG
TTCAAGCAGCTGCAGCAGCTGCAACGCACGCTGGACTCCGCCGTGCGCCG
CGAGCGCTTCGCCGACGCCGCGCGCCTGCGCGACCGCATCCACGCGCTGC
GGCTGTCCGACGACTACTGCCGCACCGAGAGCGCGCTGGCTGCCGCCGTG
CGCGAGCAGCGCTTTGCCGACGCGGCGCGCCTGCGCGACGCGCTGCGCCT
GCTCGACCCGCCACCGCCAtcgccgccgccgccgccgcctccgccgctcg
cgctgccgagcgcgtcgctgccgagcgtgtcgctgtcgagcgtgtcgctg
tcgagcgtgtcgctgtcgAGCTCAAACCGTATCTGCGTGCGCGCGGAGGG
CTACTACCTGCCGGAGCAGAGCGCGCCGGCGGAGCAGCGCTTCCTGTTCG
GCTACCGCGTGCGTATCACCAACCGCAGCGAGCACGTTTGCCAGCTGCTG
GCGCGCCACTGGGTTATCGCCACCGACGGCAACGCCGACAGCCACGTCAA
GGGCGCCGGCGTCGTGGGCCGCCAGCCCGTGCTTATGCCCGGCGAGAGCT
TCGAGTACACCTCCGCCTGCCCCATCCGCGTGCGCCCACGCCCCGGTCAG
ACCGTGCTCGGCTCCCTGCGCGGTCACTACGTCTTCTGTCGTGGCGATAC
TGGCCATATTCGATTCCGCGTCGACGTGCTCCCTTTTTGCTTTGAGCTGC
CGGCCGCCCATCGCTTGCAGCAGCCGCAGTGA
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