Ggra876.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra876.t1
Unique NameGgra876.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length251
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000212_piloncontigtig00000212_pilon:39154..39906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMR188CT
Preferred nameNdufv2
PFAMs2Fe-2S_thioredx
Max annot lvl2759|Eukaryota
KEGG rclassRC00061
KEGG koko:K03347,ko:K03943,ko:K10609
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko03420,ko04110,ko04111,ko04114,ko04120,ko04141,ko04310,ko04340,ko04341,ko04350,ko04710,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,ko05168,ko05200,map00190,map01100,map03420,map04110,map04111,map04114,map04120,map04141,map04310,map04340,map04341,map04350,map04710,map04714,map04723,map04932,map05010,map05012,map05016,map05168,map05200
KEGG ModuleM00143,M00379,M00380,M00381,M00382,M00385,M00386,M00387,M00407,M00411
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0008137,GO:0008150,GO:0008152,GO:0008270,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0034641,GO:0042773,GO:0042775,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0046872,GO:0046914,GO:0050136,GO:0050896,GO:0055086,GO:0055114,GO:0070469,GO:0071704,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
Evalue3.89e-94
EggNOG OGsCOG1905@1|root,KOG3196@2759|Eukaryota
EC1.6.5.3,1.6.99.3
DescriptionNADH dehydrogenase (quinone) activity
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000,ko03400,ko04121,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra876Ggra876Gracilaria gracilis GNS1m malegenetig00000212_pilon 39154..39906 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra876.t1.start1Ggra876.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000212_pilon 39154..39156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra876.t1.CDS1Ggra876.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000212_pilon 39154..39906 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra876.t1.exon1Ggra876.t1.exon1Gracilaria gracilis GNS1m maleexontig00000212_pilon 39154..39906 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra876.t1.stop1Ggra876.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000212_pilon 39904..39906 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra876.t1Ggra876.t1Gracilaria gracilis GNS1m malepolypeptidetig00000212_pilon 39154..39906 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra876.t1 ID=Ggra876.t1|Name=Ggra876.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=251bp
MSLVARVAKSLAVGASSRVPARPFAAGLNVHREAPHNTHDTPFEFTDQNY
QRIRTILKRFPRNYAASAVIPLLDLAQRQNGGWLPLAAMNKVAAVLNMPP
IRVYEVASFYTMFNREKIGKYNVQVCTTTPCMLRGGYDILDACKKHLRID
VGADTPDGLFHLMEVECLGACVNAPMVQINDHFYEDLTPDTVKGVLSALQ
AGKQPAIGPQIDRNGCEGPQGRTSLTSELPGPQCRDLEALKTAQPQPSTN
*
back to top

spliced messenger RNA

>Ggra876.t1 ID=Ggra876.t1|Name=Ggra876.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=753bp|location=Sequence derived from alignment at tig00000212_pilon:39154..39906+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCTCGTTGCGCGCGTGGCCAAGTCGCTCGCCGTCGGCGCGTCGTC
CCGCGTGCCGGCGCGCCCCTTCGCGGCGGGGCTCAACGTGCACCGCGAGG
CGCCGCACAACACGCATGACACGCCCTTCGAGTTCACGGACCAAAACTAC
CAGCGCATCCGCACCATCCTCAAGCGCTTCCCGCGCAACTACGCCGCCTC
CGCCGTCATCCCGCTGCTCGATCTGGCCCAGCGTCAGAACGGCGGCTGGC
TGCCGCTGGCCGCCATGAACAAGGTCGCCGCCGTGCTCAACATGCCGCCC
ATCCGCGTGTATGAGGTCGCTAGCTTCTACACCATGTTCAACCGCGAGAA
GATCGGCAAGTACAACGTGCAGGTGTGCACCACCACGCCGTGCATGCTGC
GCGGCGGCTACGATATTCTCGACGCCTGCAAGAAGCACTTGCGCATCGAC
GTGGGAGCCGATACGCCGGACGGCCTCTTCCACCTCATGGAGGTCGAGTG
TCTAGGCGCCTGTGTCAACGCACCCATGGTACAGATCAACGACCATTTCT
ACGAGGACCTCACCCCGGACACCGTCAAGGGCGTGCTGTCCGCCTTGCAG
GCCGGCAAGCAGCCCGCCATCGGCCCGCAGATCGACCGCAACGGCTGCGA
GGGGCCGCAAGGTCGCACTTCGCTTACGTCCGAGCTGCCCGGCCCACAAT
GTCGAGACCTAGAGGCGCTCAAAACGGCACAACCACAACCCTCAACCAAC
TGA
back to top

protein sequence of Ggra876.t1

>Ggra876.t1 ID=Ggra876.t1|Name=Ggra876.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=251bp
MSLVARVAKSLAVGASSRVPARPFAAGLNVHREAPHNTHDTPFEFTDQNY
QRIRTILKRFPRNYAASAVIPLLDLAQRQNGGWLPLAAMNKVAAVLNMPP
IRVYEVASFYTMFNREKIGKYNVQVCTTTPCMLRGGYDILDACKKHLRID
VGADTPDGLFHLMEVECLGACVNAPMVQINDHFYEDLTPDTVKGVLSALQ
AGKQPAIGPQIDRNGCEGPQGRTSLTSELPGPQCRDLEALKTAQPQPSTN
*
back to top

mRNA from alignment at tig00000212_pilon:39154..39906+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra876.t1 ID=Ggra876.t1|Name=Ggra876.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=753bp|location=Sequence derived from alignment at tig00000212_pilon:39154..39906+ (Gracilaria gracilis GNS1m male)
ATGTCGCTCGTTGCGCGCGTGGCCAAGTCGCTCGCCGTCGGCGCGTCGTC
CCGCGTGCCGGCGCGCCCCTTCGCGGCGGGGCTCAACGTGCACCGCGAGG
CGCCGCACAACACGCATGACACGCCCTTCGAGTTCACGGACCAAAACTAC
CAGCGCATCCGCACCATCCTCAAGCGCTTCCCGCGCAACTACGCCGCCTC
CGCCGTCATCCCGCTGCTCGATCTGGCCCAGCGTCAGAACGGCGGCTGGC
TGCCGCTGGCCGCCATGAACAAGGTCGCCGCCGTGCTCAACATGCCGCCC
ATCCGCGTGTATGAGGTCGCTAGCTTCTACACCATGTTCAACCGCGAGAA
GATCGGCAAGTACAACGTGCAGGTGTGCACCACCACGCCGTGCATGCTGC
GCGGCGGCTACGATATTCTCGACGCCTGCAAGAAGCACTTGCGCATCGAC
GTGGGAGCCGATACGCCGGACGGCCTCTTCCACCTCATGGAGGTCGAGTG
TCTAGGCGCCTGTGTCAACGCACCCATGGTACAGATCAACGACCATTTCT
ACGAGGACCTCACCCCGGACACCGTCAAGGGCGTGCTGTCCGCCTTGCAG
GCCGGCAAGCAGCCCGCCATCGGCCCGCAGATCGACCGCAACGGCTGCGA
GGGGCCGCAAGGTCGCACTTCGCTTACGTCCGAGCTGCCCGGCCCACAAT
GTCGAGACCTAGAGGCGCTCAAAACGGCACAACCACAACCCTCAACCAAC
TGA
back to top

Coding sequence (CDS) from alignment at tig00000212_pilon:39154..39906+

>Ggra876.t1 ID=Ggra876.t1|Name=Ggra876.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=753bp|location=Sequence derived from alignment at tig00000212_pilon:39154..39906+ (Gracilaria gracilis GNS1m male)
ATGTCGCTCGTTGCGCGCGTGGCCAAGTCGCTCGCCGTCGGCGCGTCGTC
CCGCGTGCCGGCGCGCCCCTTCGCGGCGGGGCTCAACGTGCACCGCGAGG
CGCCGCACAACACGCATGACACGCCCTTCGAGTTCACGGACCAAAACTAC
CAGCGCATCCGCACCATCCTCAAGCGCTTCCCGCGCAACTACGCCGCCTC
CGCCGTCATCCCGCTGCTCGATCTGGCCCAGCGTCAGAACGGCGGCTGGC
TGCCGCTGGCCGCCATGAACAAGGTCGCCGCCGTGCTCAACATGCCGCCC
ATCCGCGTGTATGAGGTCGCTAGCTTCTACACCATGTTCAACCGCGAGAA
GATCGGCAAGTACAACGTGCAGGTGTGCACCACCACGCCGTGCATGCTGC
GCGGCGGCTACGATATTCTCGACGCCTGCAAGAAGCACTTGCGCATCGAC
GTGGGAGCCGATACGCCGGACGGCCTCTTCCACCTCATGGAGGTCGAGTG
TCTAGGCGCCTGTGTCAACGCACCCATGGTACAGATCAACGACCATTTCT
ACGAGGACCTCACCCCGGACACCGTCAAGGGCGTGCTGTCCGCCTTGCAG
GCCGGCAAGCAGCCCGCCATCGGCCCGCAGATCGACCGCAACGGCTGCGA
GGGGCCGCAAGGTCGCACTTCGCTTACGTCCGAGCTGCCCGGCCCACAAT
GTCGAGACCTAGAGGCGCTCAAAACGGCACAACCACAACCCTCAACCAAC
TGA
back to top