Ggra8759.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8759.t1
Unique NameGgra8759.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length598
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:59028..60821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog388401.RB2150_16594
Preferred nameatzB
PFAMsAmidohydro_1
Max annot lvl28211|Alphaproteobacteria
Evalue1.07e-132
EggNOG OGsCOG0402@1|root,COG0402@2|Bacteria,1MVPA@1224|Proteobacteria,2TSZ0@28211|Alphaproteobacteria,3ZGI4@58840|unclassified Rhodobacteraceae
DescriptionCOG0402 Cytosine deaminase and related metal-dependent hydrolases
COG categoryF
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8759Ggra8759Gracilaria gracilis GNS1m malegenetig00000860_pilon 59028..60821 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8759.t1.stop1Ggra8759.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 59028..59030 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8759.t1.CDS1Ggra8759.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 59028..60821 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8759.t1.exon1Ggra8759.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 59028..60821 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8759.t1.start1Ggra8759.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 60819..60821 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8759.t1Ggra8759.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 59028..60821 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8759.t1 ID=Ggra8759.t1|Name=Ggra8759.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=598bp
MPAAAAHFTTTTTTTTSPPPQLLPPQPTATATTTATSTATSTATTTATST
ATSTATSTATSTATSTATSTATSTATSTATSTATACFFCLLNYYYHYCHR
HRHRHRFMAPRPTIPTERVLLKQIALLWTGDDDRLLTGCSIVVDSGIIQW
VGPHDRLPTALRASPCTTVDMSACLVTPGLVNTHHHMYQSLTKCFARNAS
LFDWLQALFPVWNFLTADMVYKSARFAMAELLLSGCTLTSDLLYLYPNDV
SLDDTIRAATELGMRFHPCRGAVSVGESDGGLPPDTLVEDEAHILRDMRR
VIDRYHDERDGSMLRIALAPCSPFSVSEQLMKSTAQLARSHTNVMLHTHF
AENGADIEYMRTNVQKGLVQFLEHCGWNDSDCWFAHCVKLRDDDHDGVYE
SSLDYFERRSLGVSHCPTSNCRLGSGAAPVPQMVKRGIPLGIGVDGSASN
DSGNLLAEARMALMVARVTQQDAAALSTSDVLRMATSGGARVLGRADVGR
IRAGMCADVAAWRLDAPAFAGSFHSHEAVLSALVLGNGGDLKAQYVMVNG
VAVVRGGQLSGDCDMVTITREHQQAAMKLWAIASDQLARAPAHAPAP*
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spliced messenger RNA

>Ggra8759.t1 ID=Ggra8759.t1|Name=Ggra8759.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1794bp|location=Sequence derived from alignment at tig00000860_pilon:59028..60821- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGCAGCAGCCGCCCACTTTACCACCACCACCACCACCACCACGTC
GCCCCCGCCGCAGCTACTGCCGCCTCAGCCCACCGCCACCGCAACCACCA
CCGCAACCTCCACCGCAACCTCCACCGCAACCACCACCGCAACCTCCACC
GCAACCTCCACCGCAACCTCCACCGCAACCTCCACCGCAACCTCCACCGC
AACCTCCACCGCAACCTCCACCGCAACCTCCACCGCAACCTCCACCGCCA
CCGCCTGTTTCTTCTGCCTCCTCAACTACTACTACCACTACTGCCACCGC
CACCGCCATCGCCACCGCTTCATGGCGCCGCGACCAACCATCCCTACCGA
GCGCGTGCTGCTCAAGCAGATTGCGCTGCTGTGGACTGGCGACGATGACC
GCCTGCTCACCGGCTGCTCCATCGTCGTCGACTCGGGCATCATCCAGTGG
GTCGGACCGCACGACCGCCTGCCCACCGCGCTGCGCGCCTCGCCGTGCAC
CACCGTGGACATGAGCGCCTGTCTGGTCACGCCCGGCCTGGTCAACACGC
ACCACCACATGTACCAGAGCCTCACCAAGTGCTTTGCGCGCAACGCCTCG
CTGTTCGACTGGCTGCAGGCGCTCTTCCCCGTGTGGAACTTCCTCACCGC
CGACATGGTGTACAAGTCGGCGCGCTTCGCAATGGCCGAGTTGCTGCTGT
CGGGCTGCACCCTCACCTCCGACCTGCTGTACCTGTACCCGAACGACGTG
TCGCTGGACGACACCATCCGCGCCGCCACCGAGCTGGGCATGCGCTTCCA
CCCGTGCCGCGGCGCCGTGTCGGTGGGCGAGAGCGACGGCGGGCTGCCGC
CAGACACGCTGGTGGAGGACGAGGCGCACATTCTCCGCGACATGCGCCGC
GTCATTGACCGCTACCACGACGAGCGTGACGGATCCATGCTGCGCATTGC
GCTGGCGCCGTGCTCGCCCTTCAGCGTGTCGGAGCAGCTCATGAAGAGCA
CGGCGCAGCTGGCGCGCTCGCACACCAACGTCATGCTGCACACGCACTTT
GCCGAGAACGGCGCCGACATTGAGTACATGCGCACCAACGTGCAAAAAGG
GCTGGTGCAATTCCTGGAGCACTGCGGCTGGAACGACAGCGACTGCTGGT
TTGCGCACTGCGTCAAGCTGCGCGACGACGACCATGACGGCGTGTACGAG
TCGTCGCTGGACTACTTTGAGCGCCGTTCACTGGGCGTGTCGCACTGCCC
GACGTCCAACTGCCGCCTGGGGTCGGGCGCCGCGCCCGTGCCGCAGATGG
TGAAGCGCGGCATCCCACTGGGCATCGGCGTGGACGGCTCGGCCAGCAAC
GACTCGGGCAACCTGCTGGCGGAGGCGCGCATGGCGCTCATGGTGGCGCG
CGTCACGCAGCAGGACGCGGCCGCGCTCAGCACGTCGGACGTACTGCGCA
TGGCCACGTCGGGCGGCGCGCGCGTGCTGGGGCGCGCCGACGTGGGGCGC
ATCCGTGCGGGCATGTGCGCCGACGTGGCGGCGTGGCGGCTGGACGCGCC
CGCCTTCGCAGGCTCCTTCCACAGTCACGAGGCCGTGCTCAGCGCGCTGG
TGCTGGGCAACGGCGGCGACCTCAAGGCGCAGTACGTCATGGTCAACGGC
GTGGCGGTGGTGCGCGGCGGACAGCTCAGCGGCGACTGCGACATGGTCAC
CATCACGCGCGAGCACCAGCAGGCGGCCATGAAGCTGTGGGCAATTGCGT
CCGACCAGCTGGCGCGCGCGCCTGCGCACGCGCCCGCGCCGTGA
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protein sequence of Ggra8759.t1

>Ggra8759.t1 ID=Ggra8759.t1|Name=Ggra8759.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=598bp
MPAAAAHFTTTTTTTTSPPPQLLPPQPTATATTTATSTATSTATTTATST
ATSTATSTATSTATSTATSTATSTATSTATSTATACFFCLLNYYYHYCHR
HRHRHRFMAPRPTIPTERVLLKQIALLWTGDDDRLLTGCSIVVDSGIIQW
VGPHDRLPTALRASPCTTVDMSACLVTPGLVNTHHHMYQSLTKCFARNAS
LFDWLQALFPVWNFLTADMVYKSARFAMAELLLSGCTLTSDLLYLYPNDV
SLDDTIRAATELGMRFHPCRGAVSVGESDGGLPPDTLVEDEAHILRDMRR
VIDRYHDERDGSMLRIALAPCSPFSVSEQLMKSTAQLARSHTNVMLHTHF
AENGADIEYMRTNVQKGLVQFLEHCGWNDSDCWFAHCVKLRDDDHDGVYE
SSLDYFERRSLGVSHCPTSNCRLGSGAAPVPQMVKRGIPLGIGVDGSASN
DSGNLLAEARMALMVARVTQQDAAALSTSDVLRMATSGGARVLGRADVGR
IRAGMCADVAAWRLDAPAFAGSFHSHEAVLSALVLGNGGDLKAQYVMVNG
VAVVRGGQLSGDCDMVTITREHQQAAMKLWAIASDQLARAPAHAPAP*
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mRNA from alignment at tig00000860_pilon:59028..60821-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8759.t1 ID=Ggra8759.t1|Name=Ggra8759.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1794bp|location=Sequence derived from alignment at tig00000860_pilon:59028..60821- (Gracilaria gracilis GNS1m male)
ATGCCCGCAGCAGCCGCCCACTTTACCACCACCACCACCACCACCACGTC
GCCCCCGCCGCAGCTACTGCCGCCTCAGCCCACCGCCACCGCAACCACCA
CCGCAACCTCCACCGCAACCTCCACCGCAACCACCACCGCAACCTCCACC
GCAACCTCCACCGCAACCTCCACCGCAACCTCCACCGCAACCTCCACCGC
AACCTCCACCGCAACCTCCACCGCAACCTCCACCGCAACCTCCACCGCCA
CCGCCTGTTTCTTCTGCCTCCTCAACTACTACTACCACTACTGCCACCGC
CACCGCCATCGCCACCGCTTCATGGCGCCGCGACCAACCATCCCTACCGA
GCGCGTGCTGCTCAAGCAGATTGCGCTGCTGTGGACTGGCGACGATGACC
GCCTGCTCACCGGCTGCTCCATCGTCGTCGACTCGGGCATCATCCAGTGG
GTCGGACCGCACGACCGCCTGCCCACCGCGCTGCGCGCCTCGCCGTGCAC
CACCGTGGACATGAGCGCCTGTCTGGTCACGCCCGGCCTGGTCAACACGC
ACCACCACATGTACCAGAGCCTCACCAAGTGCTTTGCGCGCAACGCCTCG
CTGTTCGACTGGCTGCAGGCGCTCTTCCCCGTGTGGAACTTCCTCACCGC
CGACATGGTGTACAAGTCGGCGCGCTTCGCAATGGCCGAGTTGCTGCTGT
CGGGCTGCACCCTCACCTCCGACCTGCTGTACCTGTACCCGAACGACGTG
TCGCTGGACGACACCATCCGCGCCGCCACCGAGCTGGGCATGCGCTTCCA
CCCGTGCCGCGGCGCCGTGTCGGTGGGCGAGAGCGACGGCGGGCTGCCGC
CAGACACGCTGGTGGAGGACGAGGCGCACATTCTCCGCGACATGCGCCGC
GTCATTGACCGCTACCACGACGAGCGTGACGGATCCATGCTGCGCATTGC
GCTGGCGCCGTGCTCGCCCTTCAGCGTGTCGGAGCAGCTCATGAAGAGCA
CGGCGCAGCTGGCGCGCTCGCACACCAACGTCATGCTGCACACGCACTTT
GCCGAGAACGGCGCCGACATTGAGTACATGCGCACCAACGTGCAAAAAGG
GCTGGTGCAATTCCTGGAGCACTGCGGCTGGAACGACAGCGACTGCTGGT
TTGCGCACTGCGTCAAGCTGCGCGACGACGACCATGACGGCGTGTACGAG
TCGTCGCTGGACTACTTTGAGCGCCGTTCACTGGGCGTGTCGCACTGCCC
GACGTCCAACTGCCGCCTGGGGTCGGGCGCCGCGCCCGTGCCGCAGATGG
TGAAGCGCGGCATCCCACTGGGCATCGGCGTGGACGGCTCGGCCAGCAAC
GACTCGGGCAACCTGCTGGCGGAGGCGCGCATGGCGCTCATGGTGGCGCG
CGTCACGCAGCAGGACGCGGCCGCGCTCAGCACGTCGGACGTACTGCGCA
TGGCCACGTCGGGCGGCGCGCGCGTGCTGGGGCGCGCCGACGTGGGGCGC
ATCCGTGCGGGCATGTGCGCCGACGTGGCGGCGTGGCGGCTGGACGCGCC
CGCCTTCGCAGGCTCCTTCCACAGTCACGAGGCCGTGCTCAGCGCGCTGG
TGCTGGGCAACGGCGGCGACCTCAAGGCGCAGTACGTCATGGTCAACGGC
GTGGCGGTGGTGCGCGGCGGACAGCTCAGCGGCGACTGCGACATGGTCAC
CATCACGCGCGAGCACCAGCAGGCGGCCATGAAGCTGTGGGCAATTGCGT
CCGACCAGCTGGCGCGCGCGCCTGCGCACGCGCCCGCGCCGTGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:59028..60821-

>Ggra8759.t1 ID=Ggra8759.t1|Name=Ggra8759.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1794bp|location=Sequence derived from alignment at tig00000860_pilon:59028..60821- (Gracilaria gracilis GNS1m male)
ATGCCCGCAGCAGCCGCCCACTTTACCACCACCACCACCACCACCACGTC
GCCCCCGCCGCAGCTACTGCCGCCTCAGCCCACCGCCACCGCAACCACCA
CCGCAACCTCCACCGCAACCTCCACCGCAACCACCACCGCAACCTCCACC
GCAACCTCCACCGCAACCTCCACCGCAACCTCCACCGCAACCTCCACCGC
AACCTCCACCGCAACCTCCACCGCAACCTCCACCGCAACCTCCACCGCCA
CCGCCTGTTTCTTCTGCCTCCTCAACTACTACTACCACTACTGCCACCGC
CACCGCCATCGCCACCGCTTCATGGCGCCGCGACCAACCATCCCTACCGA
GCGCGTGCTGCTCAAGCAGATTGCGCTGCTGTGGACTGGCGACGATGACC
GCCTGCTCACCGGCTGCTCCATCGTCGTCGACTCGGGCATCATCCAGTGG
GTCGGACCGCACGACCGCCTGCCCACCGCGCTGCGCGCCTCGCCGTGCAC
CACCGTGGACATGAGCGCCTGTCTGGTCACGCCCGGCCTGGTCAACACGC
ACCACCACATGTACCAGAGCCTCACCAAGTGCTTTGCGCGCAACGCCTCG
CTGTTCGACTGGCTGCAGGCGCTCTTCCCCGTGTGGAACTTCCTCACCGC
CGACATGGTGTACAAGTCGGCGCGCTTCGCAATGGCCGAGTTGCTGCTGT
CGGGCTGCACCCTCACCTCCGACCTGCTGTACCTGTACCCGAACGACGTG
TCGCTGGACGACACCATCCGCGCCGCCACCGAGCTGGGCATGCGCTTCCA
CCCGTGCCGCGGCGCCGTGTCGGTGGGCGAGAGCGACGGCGGGCTGCCGC
CAGACACGCTGGTGGAGGACGAGGCGCACATTCTCCGCGACATGCGCCGC
GTCATTGACCGCTACCACGACGAGCGTGACGGATCCATGCTGCGCATTGC
GCTGGCGCCGTGCTCGCCCTTCAGCGTGTCGGAGCAGCTCATGAAGAGCA
CGGCGCAGCTGGCGCGCTCGCACACCAACGTCATGCTGCACACGCACTTT
GCCGAGAACGGCGCCGACATTGAGTACATGCGCACCAACGTGCAAAAAGG
GCTGGTGCAATTCCTGGAGCACTGCGGCTGGAACGACAGCGACTGCTGGT
TTGCGCACTGCGTCAAGCTGCGCGACGACGACCATGACGGCGTGTACGAG
TCGTCGCTGGACTACTTTGAGCGCCGTTCACTGGGCGTGTCGCACTGCCC
GACGTCCAACTGCCGCCTGGGGTCGGGCGCCGCGCCCGTGCCGCAGATGG
TGAAGCGCGGCATCCCACTGGGCATCGGCGTGGACGGCTCGGCCAGCAAC
GACTCGGGCAACCTGCTGGCGGAGGCGCGCATGGCGCTCATGGTGGCGCG
CGTCACGCAGCAGGACGCGGCCGCGCTCAGCACGTCGGACGTACTGCGCA
TGGCCACGTCGGGCGGCGCGCGCGTGCTGGGGCGCGCCGACGTGGGGCGC
ATCCGTGCGGGCATGTGCGCCGACGTGGCGGCGTGGCGGCTGGACGCGCC
CGCCTTCGCAGGCTCCTTCCACAGTCACGAGGCCGTGCTCAGCGCGCTGG
TGCTGGGCAACGGCGGCGACCTCAAGGCGCAGTACGTCATGGTCAACGGC
GTGGCGGTGGTGCGCGGCGGACAGCTCAGCGGCGACTGCGACATGGTCAC
CATCACGCGCGAGCACCAGCAGGCGGCCATGAAGCTGTGGGCAATTGCGT
CCGACCAGCTGGCGCGCGCGCCTGCGCACGCGCCCGCGCCGTGA
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