Ggra8753.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8753.t1
Unique NameGgra8753.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length372
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000127_piloncontigtig00000127_pilon:105274..106389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8753Ggra8753Gracilaria gracilis GNS1m malegenetig00000127_pilon 105274..106389 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8753.t1.start1Ggra8753.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000127_pilon 105274..105276 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8753.t1.CDS1Ggra8753.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000127_pilon 105274..106389 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8753.t1.exon1Ggra8753.t1.exon1Gracilaria gracilis GNS1m maleexontig00000127_pilon 105274..106389 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8753.t1.stop1Ggra8753.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000127_pilon 106387..106389 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8753.t1Ggra8753.t1Gracilaria gracilis GNS1m malepolypeptidetig00000127_pilon 105274..106389 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8753.t1 ID=Ggra8753.t1|Name=Ggra8753.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=372bp
MTSLSYPVPGQPYLVRNPLPLETVKELLKDISFSLRLCDDKINFGVYAAT
AHMDTSFTFYDRFPPETSIWVINHVKPKTPEKSVRHTLYKPQELLVALLQ
AQVAFMVFNEGDHWSLWVAAGLPELYKHITIDGREALPAPLLTIAHFDSS
SARGHWEFRSGVAAWYANAARVAAKNVENRDIREEVETFFKHQTKFVSVS
VPQQQSTELNCGWRVINALSEVLKNRKGLQEFFSVGLNSPLHGTQQRVVE
VIKTMIPRDLVGTSRIELADCIVCGDTRAHSSVKPCPLDGELICSSCLSK
YKECKIPVFQFDGDEGKAQNTIRRVPGGRELEVYGFRRHKNNRKRVYSRP
YLRPKKVSKPDGYGGEERERP*
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spliced messenger RNA

>Ggra8753.t1 ID=Ggra8753.t1|Name=Ggra8753.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1116bp|location=Sequence derived from alignment at tig00000127_pilon:105274..106389+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGAGCCTTTCGTATCCTGTTCCCGGACAACCATATCTGGTGCGAAA
TCCTCTTCCCCTCGAGACCGTCAAGGAACTTTTGAAGGACATAAGTTTCT
CCTTGCGGCTGTGTGATGACAAAATCAACTTTGGTGTTTACGCTGCGACG
GCACACATGGACACAAGTTTTACATTCTACGACCGATTCCCACCGGAAAC
CAGTATTTGGGTTATTAATCATGTTAAACCAAAGACGCCAGAAAAGTCGG
TTCGGCACACCTTATACAAACCGCAGGAACTGCTGGTGGCCTTACTACAA
GCACAAGTTGCTTTTATGGTATTTAACGAAGGTGATCATTGGTCTCTATG
GGTTGCAGCGGGACTCCCAGAGCTGTACAAACACATCACGATTGATGGAA
GAGAAGCTCTACCGGCTCCCCTTCTAACAATTGCTCACTTTGATAGCAGC
TCAGCACGTGGGCACTGGGAGTTTCGTTCGGGTGTGGCTGCTTGGTATGC
AAATGCAGCAAGAGTGGCTGCCAAAAATGTAGAGAATCGCGACATTAGAG
AAGAAGTTGAGACCTTCTTCAAGCATCAAACCAAATTTGTATCGGTTTCC
GTGCCACAGCAGCAATCAACAGAGCTGAACTGCGGCTGGCGGGTTATTAA
TGCATTGAGCGAAGTCCTGAAGAACCGCAAAGGATTGCAAGAATTCTTTT
CTGTAGGTCTCAATAGTCCATTGCATGGTACGCAGCAACGTGTTGTTGAA
GTTATCAAGACCATGATACCGAGAGACCTTGTCGGGACCTCTCGTATAGA
ACTAGCAGACTGCATAGTTTGCGGAGATACAAGGGCACATAGCAGCGTCA
AACCATGCCCCTTAGACGGAGAGCTCATATGTAGCTCATGTCTTTCTAAG
TACAAGGAATGTAAGATTCCAGTATTTCAGTTCGACGGGGATGAAGGAAA
GGCGCAAAATACTATCCGAAGAGTTCCTGGAGGCCGGGAACTTGAGGTCT
ATGGATTTCGTCGTCATAAGAACAACCGCAAGCGAGTTTACAGCCGCCCC
TATCTGAGACCGAAGAAGGTTTCTAAGCCAGATGGCTATGGCGGTGAAGA
ACGAGAACGTCCGTAA
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protein sequence of Ggra8753.t1

>Ggra8753.t1 ID=Ggra8753.t1|Name=Ggra8753.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=372bp
MTSLSYPVPGQPYLVRNPLPLETVKELLKDISFSLRLCDDKINFGVYAAT
AHMDTSFTFYDRFPPETSIWVINHVKPKTPEKSVRHTLYKPQELLVALLQ
AQVAFMVFNEGDHWSLWVAAGLPELYKHITIDGREALPAPLLTIAHFDSS
SARGHWEFRSGVAAWYANAARVAAKNVENRDIREEVETFFKHQTKFVSVS
VPQQQSTELNCGWRVINALSEVLKNRKGLQEFFSVGLNSPLHGTQQRVVE
VIKTMIPRDLVGTSRIELADCIVCGDTRAHSSVKPCPLDGELICSSCLSK
YKECKIPVFQFDGDEGKAQNTIRRVPGGRELEVYGFRRHKNNRKRVYSRP
YLRPKKVSKPDGYGGEERERP*
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mRNA from alignment at tig00000127_pilon:105274..106389+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8753.t1 ID=Ggra8753.t1|Name=Ggra8753.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1116bp|location=Sequence derived from alignment at tig00000127_pilon:105274..106389+ (Gracilaria gracilis GNS1m male)
ATGACGAGCCTTTCGTATCCTGTTCCCGGACAACCATATCTGGTGCGAAA
TCCTCTTCCCCTCGAGACCGTCAAGGAACTTTTGAAGGACATAAGTTTCT
CCTTGCGGCTGTGTGATGACAAAATCAACTTTGGTGTTTACGCTGCGACG
GCACACATGGACACAAGTTTTACATTCTACGACCGATTCCCACCGGAAAC
CAGTATTTGGGTTATTAATCATGTTAAACCAAAGACGCCAGAAAAGTCGG
TTCGGCACACCTTATACAAACCGCAGGAACTGCTGGTGGCCTTACTACAA
GCACAAGTTGCTTTTATGGTATTTAACGAAGGTGATCATTGGTCTCTATG
GGTTGCAGCGGGACTCCCAGAGCTGTACAAACACATCACGATTGATGGAA
GAGAAGCTCTACCGGCTCCCCTTCTAACAATTGCTCACTTTGATAGCAGC
TCAGCACGTGGGCACTGGGAGTTTCGTTCGGGTGTGGCTGCTTGGTATGC
AAATGCAGCAAGAGTGGCTGCCAAAAATGTAGAGAATCGCGACATTAGAG
AAGAAGTTGAGACCTTCTTCAAGCATCAAACCAAATTTGTATCGGTTTCC
GTGCCACAGCAGCAATCAACAGAGCTGAACTGCGGCTGGCGGGTTATTAA
TGCATTGAGCGAAGTCCTGAAGAACCGCAAAGGATTGCAAGAATTCTTTT
CTGTAGGTCTCAATAGTCCATTGCATGGTACGCAGCAACGTGTTGTTGAA
GTTATCAAGACCATGATACCGAGAGACCTTGTCGGGACCTCTCGTATAGA
ACTAGCAGACTGCATAGTTTGCGGAGATACAAGGGCACATAGCAGCGTCA
AACCATGCCCCTTAGACGGAGAGCTCATATGTAGCTCATGTCTTTCTAAG
TACAAGGAATGTAAGATTCCAGTATTTCAGTTCGACGGGGATGAAGGAAA
GGCGCAAAATACTATCCGAAGAGTTCCTGGAGGCCGGGAACTTGAGGTCT
ATGGATTTCGTCGTCATAAGAACAACCGCAAGCGAGTTTACAGCCGCCCC
TATCTGAGACCGAAGAAGGTTTCTAAGCCAGATGGCTATGGCGGTGAAGA
ACGAGAACGTCCGTAA
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Coding sequence (CDS) from alignment at tig00000127_pilon:105274..106389+

>Ggra8753.t1 ID=Ggra8753.t1|Name=Ggra8753.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1116bp|location=Sequence derived from alignment at tig00000127_pilon:105274..106389+ (Gracilaria gracilis GNS1m male)
ATGACGAGCCTTTCGTATCCTGTTCCCGGACAACCATATCTGGTGCGAAA
TCCTCTTCCCCTCGAGACCGTCAAGGAACTTTTGAAGGACATAAGTTTCT
CCTTGCGGCTGTGTGATGACAAAATCAACTTTGGTGTTTACGCTGCGACG
GCACACATGGACACAAGTTTTACATTCTACGACCGATTCCCACCGGAAAC
CAGTATTTGGGTTATTAATCATGTTAAACCAAAGACGCCAGAAAAGTCGG
TTCGGCACACCTTATACAAACCGCAGGAACTGCTGGTGGCCTTACTACAA
GCACAAGTTGCTTTTATGGTATTTAACGAAGGTGATCATTGGTCTCTATG
GGTTGCAGCGGGACTCCCAGAGCTGTACAAACACATCACGATTGATGGAA
GAGAAGCTCTACCGGCTCCCCTTCTAACAATTGCTCACTTTGATAGCAGC
TCAGCACGTGGGCACTGGGAGTTTCGTTCGGGTGTGGCTGCTTGGTATGC
AAATGCAGCAAGAGTGGCTGCCAAAAATGTAGAGAATCGCGACATTAGAG
AAGAAGTTGAGACCTTCTTCAAGCATCAAACCAAATTTGTATCGGTTTCC
GTGCCACAGCAGCAATCAACAGAGCTGAACTGCGGCTGGCGGGTTATTAA
TGCATTGAGCGAAGTCCTGAAGAACCGCAAAGGATTGCAAGAATTCTTTT
CTGTAGGTCTCAATAGTCCATTGCATGGTACGCAGCAACGTGTTGTTGAA
GTTATCAAGACCATGATACCGAGAGACCTTGTCGGGACCTCTCGTATAGA
ACTAGCAGACTGCATAGTTTGCGGAGATACAAGGGCACATAGCAGCGTCA
AACCATGCCCCTTAGACGGAGAGCTCATATGTAGCTCATGTCTTTCTAAG
TACAAGGAATGTAAGATTCCAGTATTTCAGTTCGACGGGGATGAAGGAAA
GGCGCAAAATACTATCCGAAGAGTTCCTGGAGGCCGGGAACTTGAGGTCT
ATGGATTTCGTCGTCATAAGAACAACCGCAAGCGAGTTTACAGCCGCCCC
TATCTGAGACCGAAGAAGGTTTCTAAGCCAGATGGCTATGGCGGTGAAGA
ACGAGAACGTCCGTAA
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