Ggra8750.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8750.t1
Unique Name	Ggra8750.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	320

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000127_pilon	contig	tig00000127_pilon:87606..88565 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	278963.ATWD01000001_gene1212
Max annot lvl	204432\|Acidobacteriia
Evalue	1.52e-17
EggNOG OGs	COG3173@1\|root,COG3173@2\|Bacteria,3Y84D@57723\|Acidobacteria,2JN7X@204432\|Acidobacteriia
Description	Aminoglycoside phosphotransferase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8750	Ggra8750	Gracilaria gracilis GNS1m male	gene	tig00000127_pilon 87606..88565 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8750.t1.start1	Ggra8750.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000127_pilon 87606..87608 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8750.t1.CDS1	Ggra8750.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000127_pilon 87606..88565 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8750.t1.exon1	Ggra8750.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000127_pilon 87606..88565 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8750.t1.stop1	Ggra8750.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000127_pilon 88563..88565 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8750.t1	Ggra8750.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000127_pilon 87606..88565 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000127_pilon:87606..88565+
coding sequence from alignment at tig00000127_pilon:87606..88565+

mRNA sequence

>Ggra8750.t1 ID=Ggra8750.t1|Name=Ggra8750.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=320bp
MGWFREVERWVRDVLCLTGFLVLDISHVHNTEDSEVLRVKAVANGAALST
ATKPPSVFYVKTGREDSFEAILTNKITSFSGSIVPKVVAVNEEWNTFIQH
DAGTPFCRPDPILLLGGLAALQRTSISHLEELKRVGMHTHSVKWVINNIE
KILRHPLIKNNGVFADEVFLLQRISAIKCLLRHLDSHGLPDTIVHGDLHI
GNIAVGEEQQGTPTCSIIDWGSAFLGNPLLDVAVLLENLDLEADRHTQTV
LHYLACWGWQIPVLTLRNLLRIASLCYWMLNLYYAIQGCQQTPAGEHRNL
DELASGILIMSQHLGDIKV*

spliced messenger RNA

>Ggra8750.t1 ID=Ggra8750.t1|Name=Ggra8750.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=960bp|location=Sequence derived from alignment at tig00000127_pilon:87606..88565+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTTGGTTTCGGGAAGTAGAAAGATGGGTACGTGATGTTCTATGCTT
AACAGGATTTCTTGTCTTAGACATCAGCCATGTGCATAATACAGAGGACT
CCGAGGTTCTCAGGGTTAAAGCAGTTGCAAACGGAGCAGCGCTTAGCACA
GCCACGAAACCGCCAAGCGTTTTCTACGTAAAGACTGGTCGAGAGGACTC
TTTCGAAGCAATTCTCACGAACAAGATAACCAGCTTTTCCGGAAGTATTG
TCCCGAAGGTAGTGGCAGTTAATGAGGAGTGGAATACCTTTATTCAACAC
GACGCCGGAACGCCTTTCTGTAGACCAGATCCCATACTTCTCTTGGGAGG
ACTTGCTGCGCTGCAGAGGACGTCCATATCACATCTGGAAGAACTGAAGA
GGGTAGGGATGCACACCCACAGTGTGAAGTGGGTAATCAATAATATCGAA
AAGATATTACGACACCCATTAATTAAGAATAACGGAGTTTTTGCAGACGA
AGTGTTTCTTCTACAAAGGATCTCCGCTATCAAGTGCTTACTTCGGCATT
TGGATTCCCATGGCCTTCCAGATACTATCGTACATGGTGATCTACATATT
GGCAACATTGCAGTTGGAGAAGAGCAACAAGGGACTCCAACATGTAGTAT
CATCGACTGGGGCTCCGCGTTCCTTGGGAATCCCCTTCTCGACGTGGCTG
TGCTTCTTGAGAATCTGGACTTGGAAGCTGATAGACACACGCAAACTGTT
TTGCATTACTTAGCTTGCTGGGGTTGGCAAATACCAGTCCTTACGCTGAG
AAACCTTCTGCGAATTGCCAGTCTCTGTTACTGGATGTTGAATTTGTACT
ATGCGATCCAAGGATGTCAACAAACTCCAGCTGGAGAACATAGGAATCTA
GATGAACTAGCCAGCGGTATACTGATAATGAGCCAGCATTTGGGAGACAT
CAAAGTCTAA

protein sequence of Ggra8750.t1

>Ggra8750.t1 ID=Ggra8750.t1|Name=Ggra8750.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=320bp
MGWFREVERWVRDVLCLTGFLVLDISHVHNTEDSEVLRVKAVANGAALST
ATKPPSVFYVKTGREDSFEAILTNKITSFSGSIVPKVVAVNEEWNTFIQH
DAGTPFCRPDPILLLGGLAALQRTSISHLEELKRVGMHTHSVKWVINNIE
KILRHPLIKNNGVFADEVFLLQRISAIKCLLRHLDSHGLPDTIVHGDLHI
GNIAVGEEQQGTPTCSIIDWGSAFLGNPLLDVAVLLENLDLEADRHTQTV
LHYLACWGWQIPVLTLRNLLRIASLCYWMLNLYYAIQGCQQTPAGEHRNL
DELASGILIMSQHLGDIKV*

mRNA from alignment at tig00000127_pilon:87606..88565+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8750.t1 ID=Ggra8750.t1|Name=Ggra8750.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=960bp|location=Sequence derived from alignment at tig00000127_pilon:87606..88565+ (Gracilaria gracilis GNS1m male)
ATGGGTTGGTTTCGGGAAGTAGAAAGATGGGTACGTGATGTTCTATGCTT
AACAGGATTTCTTGTCTTAGACATCAGCCATGTGCATAATACAGAGGACT
CCGAGGTTCTCAGGGTTAAAGCAGTTGCAAACGGAGCAGCGCTTAGCACA
GCCACGAAACCGCCAAGCGTTTTCTACGTAAAGACTGGTCGAGAGGACTC
TTTCGAAGCAATTCTCACGAACAAGATAACCAGCTTTTCCGGAAGTATTG
TCCCGAAGGTAGTGGCAGTTAATGAGGAGTGGAATACCTTTATTCAACAC
GACGCCGGAACGCCTTTCTGTAGACCAGATCCCATACTTCTCTTGGGAGG
ACTTGCTGCGCTGCAGAGGACGTCCATATCACATCTGGAAGAACTGAAGA
GGGTAGGGATGCACACCCACAGTGTGAAGTGGGTAATCAATAATATCGAA
AAGATATTACGACACCCATTAATTAAGAATAACGGAGTTTTTGCAGACGA
AGTGTTTCTTCTACAAAGGATCTCCGCTATCAAGTGCTTACTTCGGCATT
TGGATTCCCATGGCCTTCCAGATACTATCGTACATGGTGATCTACATATT
GGCAACATTGCAGTTGGAGAAGAGCAACAAGGGACTCCAACATGTAGTAT
CATCGACTGGGGCTCCGCGTTCCTTGGGAATCCCCTTCTCGACGTGGCTG
TGCTTCTTGAGAATCTGGACTTGGAAGCTGATAGACACACGCAAACTGTT
TTGCATTACTTAGCTTGCTGGGGTTGGCAAATACCAGTCCTTACGCTGAG
AAACCTTCTGCGAATTGCCAGTCTCTGTTACTGGATGTTGAATTTGTACT
ATGCGATCCAAGGATGTCAACAAACTCCAGCTGGAGAACATAGGAATCTA
GATGAACTAGCCAGCGGTATACTGATAATGAGCCAGCATTTGGGAGACAT
CAAAGTCTAA

Coding sequence (CDS) from alignment at tig00000127_pilon:87606..88565+

>Ggra8750.t1 ID=Ggra8750.t1|Name=Ggra8750.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=960bp|location=Sequence derived from alignment at tig00000127_pilon:87606..88565+ (Gracilaria gracilis GNS1m male)
ATGGGTTGGTTTCGGGAAGTAGAAAGATGGGTACGTGATGTTCTATGCTT
AACAGGATTTCTTGTCTTAGACATCAGCCATGTGCATAATACAGAGGACT
CCGAGGTTCTCAGGGTTAAAGCAGTTGCAAACGGAGCAGCGCTTAGCACA
GCCACGAAACCGCCAAGCGTTTTCTACGTAAAGACTGGTCGAGAGGACTC
TTTCGAAGCAATTCTCACGAACAAGATAACCAGCTTTTCCGGAAGTATTG
TCCCGAAGGTAGTGGCAGTTAATGAGGAGTGGAATACCTTTATTCAACAC
GACGCCGGAACGCCTTTCTGTAGACCAGATCCCATACTTCTCTTGGGAGG
ACTTGCTGCGCTGCAGAGGACGTCCATATCACATCTGGAAGAACTGAAGA
GGGTAGGGATGCACACCCACAGTGTGAAGTGGGTAATCAATAATATCGAA
AAGATATTACGACACCCATTAATTAAGAATAACGGAGTTTTTGCAGACGA
AGTGTTTCTTCTACAAAGGATCTCCGCTATCAAGTGCTTACTTCGGCATT
TGGATTCCCATGGCCTTCCAGATACTATCGTACATGGTGATCTACATATT
GGCAACATTGCAGTTGGAGAAGAGCAACAAGGGACTCCAACATGTAGTAT
CATCGACTGGGGCTCCGCGTTCCTTGGGAATCCCCTTCTCGACGTGGCTG
TGCTTCTTGAGAATCTGGACTTGGAAGCTGATAGACACACGCAAACTGTT
TTGCATTACTTAGCTTGCTGGGGTTGGCAAATACCAGTCCTTACGCTGAG
AAACCTTCTGCGAATTGCCAGTCTCTGTTACTGGATGTTGAATTTGTACT
ATGCGATCCAAGGATGTCAACAAACTCCAGCTGGAGAACATAGGAATCTA
GATGAACTAGCCAGCGGTATACTGATAATGAGCCAGCATTTGGGAGACAT
CAAAGTCTAA