Ggra8745.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8745.t1
Unique NameGgra8745.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length375
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000127_piloncontigtig00000127_pilon:74660..77054 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8745Ggra8745Gracilaria gracilis GNS1m malegenetig00000127_pilon 74660..77054 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8745.t1Ggra8745.t1Gracilaria gracilis GNS1m malepolypeptidetig00000127_pilon 74660..77054 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8745.t1.start1Ggra8745.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000127_pilon 74660..74662 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8745.t1.CDS1Ggra8745.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000127_pilon 74660..75499 +
Ggra8745.t1.CDS2Ggra8745.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000127_pilon 76770..77054 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8745.t1.exon1Ggra8745.t1.exon1Gracilaria gracilis GNS1m maleexontig00000127_pilon 74660..75499 +
Ggra8745.t1.exon2Ggra8745.t1.exon2Gracilaria gracilis GNS1m maleexontig00000127_pilon 76770..77054 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8745.t1.intron1Ggra8745.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000127_pilon 75500..76769 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8745.t1.stop1Ggra8745.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000127_pilon 77052..77054 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8745.t1 ID=Ggra8745.t1|Name=Ggra8745.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=375bp
MDAPSMDNGVFFCVEHERNKCLTVHGVIGTDPSHRCIVCRQPIHIICRSI
PDAEIRNRYAPNDPIEGSGAGALCSACRVHLVVEQKTDDVEHNSSKSFQV
IGSLVPNDVRVFKYTESCDKPVHRIFSDSVHYLCSSGSNPFMDSITGERN
RIMLPGVKTKTFCGDKRIQIEQQGQNAEKCKRYRAKHKERYNRTARSRYH
ARKQQQRKRSTDATNEKDSNDSKSASMFLPTDLDPSGTSNLKKSQGQYHV
HTVTDVYEVRRSFHVFRYGMTEPRNGVFFRDYDGGCEYNATPQIDPSAHP
KAAKYPGEPLSHHAQLHQSGVRGQAVLFVFGALNLREEILGVSLKPNLPP
TLWAGVETPKMQYELQTALKPRLE*
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spliced messenger RNA

>Ggra8745.t1 ID=Ggra8745.t1|Name=Ggra8745.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1125bp|location=Sequence derived from alignment at tig00000127_pilon:74660..77054+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCCCCAAGTATGGATAATGGTGTCTTTTTCTGCGTTGAGCACGA
GCGCAACAAATGTCTGACAGTCCATGGTGTTATTGGTACGGACCCAAGTC
ATCGCTGCATTGTCTGCAGACAACCGATACACATAATATGCCGATCAATC
CCTGATGCTGAAATAAGGAATCGTTACGCTCCCAATGATCCAATTGAAGG
ATCTGGGGCAGGTGCTCTGTGTAGTGCATGTCGTGTGCACCTTGTTGTGG
AGCAGAAGACAGACGACGTCGAACACAATTCTTCTAAATCGTTTCAGGTG
ATTGGTAGTTTAGTTCCCAATGATGTCAGAGTGTTCAAGTACACTGAAAG
TTGCGATAAGCCTGTACATCGCATATTCAGTGATAGCGTGCATTACCTGT
GCTCTTCAGGATCCAATCCTTTTATGGATAGCATTACTGGTGAACGAAAT
CGGATTATGTTACCAGGTGTGAAGACGAAAACTTTCTGCGGAGACAAAAG
GATCCAAATAGAGCAACAAGGACAAAACGCAGAGAAGTGCAAACGCTATA
GAGCAAAGCACAAAGAGAGATACAATAGGACAGCCAGAAGTCGGTACCAT
GCAAGAAAACAACAGCAGAGAAAGAGGAGCACTGACGCAACAAATGAGAA
AGATTCTAATGATTCTAAATCTGCCTCGATGTTTCTTCCAACTGACCTTG
ATCCTTCAGGGACTTCAAATCTAAAGAAATCACAGGGTCAATATCACGTG
CATACGGTGACCGATGTTTATGAAGTGAGGCGGTCCTTTCACGTTTTCCG
GTACGGTATGACTGAGCCTCGAAATGGTGTCTTTTTTCGCGATTACGATG
GAGGATGTGAGTACAATGCAACTCCGCAGATTGACCCTAGCGCACATCCC
AAAGCAGCGAAATATCCAGGAGAACCACTTTCACATCACGCTCAACTCCA
TCAATCTGGAGTACGTGGACAAGCCGTGTTGTTTGTCTTCGGCGCGCTCA
ATCTGCGCGAGGAAATCCTGGGCGTGTCTCTGAAGCCCAACCTGCCGCCG
ACGCTGTGGGCGGGCGTAGAGACGCCGAAGATGCAGTATGAGCTACAAAC
GGCACTCAAACCGCGGTTGGAGTAG
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protein sequence of Ggra8745.t1

>Ggra8745.t1 ID=Ggra8745.t1|Name=Ggra8745.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=375bp
MDAPSMDNGVFFCVEHERNKCLTVHGVIGTDPSHRCIVCRQPIHIICRSI
PDAEIRNRYAPNDPIEGSGAGALCSACRVHLVVEQKTDDVEHNSSKSFQV
IGSLVPNDVRVFKYTESCDKPVHRIFSDSVHYLCSSGSNPFMDSITGERN
RIMLPGVKTKTFCGDKRIQIEQQGQNAEKCKRYRAKHKERYNRTARSRYH
ARKQQQRKRSTDATNEKDSNDSKSASMFLPTDLDPSGTSNLKKSQGQYHV
HTVTDVYEVRRSFHVFRYGMTEPRNGVFFRDYDGGCEYNATPQIDPSAHP
KAAKYPGEPLSHHAQLHQSGVRGQAVLFVFGALNLREEILGVSLKPNLPP
TLWAGVETPKMQYELQTALKPRLE*
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mRNA from alignment at tig00000127_pilon:74660..77054+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8745.t1 ID=Ggra8745.t1|Name=Ggra8745.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2395bp|location=Sequence derived from alignment at tig00000127_pilon:74660..77054+ (Gracilaria gracilis GNS1m male)
ATGGACGCCCCAAGTATGGATAATGGTGTCTTTTTCTGCGTTGAGCACGA
GCGCAACAAATGTCTGACAGTCCATGGTGTTATTGGTACGGACCCAAGTC
ATCGCTGCATTGTCTGCAGACAACCGATACACATAATATGCCGATCAATC
CCTGATGCTGAAATAAGGAATCGTTACGCTCCCAATGATCCAATTGAAGG
ATCTGGGGCAGGTGCTCTGTGTAGTGCATGTCGTGTGCACCTTGTTGTGG
AGCAGAAGACAGACGACGTCGAACACAATTCTTCTAAATCGTTTCAGGTG
ATTGGTAGTTTAGTTCCCAATGATGTCAGAGTGTTCAAGTACACTGAAAG
TTGCGATAAGCCTGTACATCGCATATTCAGTGATAGCGTGCATTACCTGT
GCTCTTCAGGATCCAATCCTTTTATGGATAGCATTACTGGTGAACGAAAT
CGGATTATGTTACCAGGTGTGAAGACGAAAACTTTCTGCGGAGACAAAAG
GATCCAAATAGAGCAACAAGGACAAAACGCAGAGAAGTGCAAACGCTATA
GAGCAAAGCACAAAGAGAGATACAATAGGACAGCCAGAAGTCGGTACCAT
GCAAGAAAACAACAGCAGAGAAAGAGGAGCACTGACGCAACAAATGAGAA
AGATTCTAATGATTCTAAATCTGCCTCGATGTTTCTTCCAACTGACCTTG
ATCCTTCAGGGACTTCAAATCTAAAGAAATCACAGGGTCAATATCACGTG
CATACGGTGACCGATGTTTATGAAGTGAGGCGGTCCTTTCACGTTTTCCG
GTACGGTATGACTGAGCCTCGAAATGGTGTCTTTTTTCGCGTAAATGATG
AGAGTGGACACGAGAGAAGGTTGTACCAGTCAAAACGCCAAGATACAGGA
GGGCAAGATTGAGGATCTGCTTGCAGTAATTCTTTGCAGTGCATGGGTGT
TCTAGTATAAAAGTACTTCGTCTCTTTGTTTTCTTTAGACGAAAAAGCTA
TACAAGAAGTTTCAAGAACAAGTTGGTAAAAAGGACCCTCTCTGACAGAC
AGAAAGGGGTAGCCACACCGCCAGAAATCGTCTCACATCGCTTTCAAAGG
CTCTTGTTTCCTAGTGCGCCACATTTTCTCTTGAAATGATATGTGGACAA
AGCCACGCTACTGCGCTATTGGCTTCGCACACGGCGATACGGAACTGATG
CAATATTCATCGTGTTTGACCGTTTCCACGTAGACTGGCACGTCACCGTA
CTCTGAGATAGTGCGCCATTTGTGAACTTCTTTTCTGACCTGTTTGAAGT
TTTCATAATGTTCGAATAGATTCATTATAGACGTTCACGGTTTGCCTCAT
ATGATATGCGAGTCCTGCATTCCGTTCGGGTTGCAAAAGGCAGCAACGGC
AACCAGGTTGTACGCGCGCTAAAGGCCATTGAGCACAAATGTAAAGTGTC
TGGTGCGACCGTTGAACACGCACGAAGCAGCAGGGCGCTCTCTACGGCGT
CATGGCGTCGAATAGACGCGCGTCCGTAAAATGCATCCACTGCTGCCGCA
GCAGCTGCATGTGAGTGATCAACGTGAGCGGTGGCGCCATCGAGTTATTG
GCGTGAACTGGCGTCCATGTATTGAGCTTTATCGCCGAGTATTGCCGTCG
CGGTGACGGCTGCGTGCAGCGCAGCGGTGACGGTGCTGACGAGGGATCGT
CGACGCAAATATGACGAGCACATTGCAAGACATGGCTGTTGAGCAGAGCG
CATTGAACGGCCGTGATCTCTCTGCACGGCAGCCAGAGGAAACAAAGCGC
CGATGATAGTAGTTTCAAAACGCCAAATCAAAACATGGACCGAAAACAGG
TGCCACTGTCGCTACGTGTAGCTCTTTGGCGTGTGGTACCAAAGGTGCAG
ATCGCGCGAAGACGGTTGTGGTCCGAAGGATCGCGCGTAAGGTGTGCGCG
CACGTCGCAGAAGAAGGTATTGATGATGAATCGGGCACTCCTTGTACATG
GCACATACGTGAGTGCATTTGAATTTCACGAGCAACACAGGCGCTACCGC
CACAGCAACCGCATTAGCAGCAGTAACAACGAGCACAGTTGACTTGCTTG
CCTCTTTAAGGATTACGATGGAGGATGTGAGTACAATGCAACTCCGCAGA
TTGACCCTAGCGCACATCCCAAAGCAGCGAAATATCCAGGAGAACCACTT
TCACATCACGCTCAACTCCATCAATCTGGAGTACGTGGACAAGCCGTGTT
GTTTGTCTTCGGCGCGCTCAATCTGCGCGAGGAAATCCTGGGCGTGTCTC
TGAAGCCCAACCTGCCGCCGACGCTGTGGGCGGGCGTAGAGACGCCGAAG
ATGCAGTATGAGCTACAAACGGCACTCAAACCGCGGTTGGAGTAG
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Coding sequence (CDS) from alignment at tig00000127_pilon:74660..77054+

>Ggra8745.t1 ID=Ggra8745.t1|Name=Ggra8745.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1125bp|location=Sequence derived from alignment at tig00000127_pilon:74660..77054+ (Gracilaria gracilis GNS1m male)
ATGGACGCCCCAAGTATGGATAATGGTGTCTTTTTCTGCGTTGAGCACGA
GCGCAACAAATGTCTGACAGTCCATGGTGTTATTGGTACGGACCCAAGTC
ATCGCTGCATTGTCTGCAGACAACCGATACACATAATATGCCGATCAATC
CCTGATGCTGAAATAAGGAATCGTTACGCTCCCAATGATCCAATTGAAGG
ATCTGGGGCAGGTGCTCTGTGTAGTGCATGTCGTGTGCACCTTGTTGTGG
AGCAGAAGACAGACGACGTCGAACACAATTCTTCTAAATCGTTTCAGGTG
ATTGGTAGTTTAGTTCCCAATGATGTCAGAGTGTTCAAGTACACTGAAAG
TTGCGATAAGCCTGTACATCGCATATTCAGTGATAGCGTGCATTACCTGT
GCTCTTCAGGATCCAATCCTTTTATGGATAGCATTACTGGTGAACGAAAT
CGGATTATGTTACCAGGTGTGAAGACGAAAACTTTCTGCGGAGACAAAAG
GATCCAAATAGAGCAACAAGGACAAAACGCAGAGAAGTGCAAACGCTATA
GAGCAAAGCACAAAGAGAGATACAATAGGACAGCCAGAAGTCGGTACCAT
GCAAGAAAACAACAGCAGAGAAAGAGGAGCACTGACGCAACAAATGAGAA
AGATTCTAATGATTCTAAATCTGCCTCGATGTTTCTTCCAACTGACCTTG
ATCCTTCAGGGACTTCAAATCTAAAGAAATCACAGGGTCAATATCACGTG
CATACGGTGACCGATGTTTATGAAGTGAGGCGGTCCTTTCACGTTTTCCG
GTACGGTATGACTGAGCCTCGAAATGGTGTCTTTTTTCGCGATTACGATG
GAGGATGTGAGTACAATGCAACTCCGCAGATTGACCCTAGCGCACATCCC
AAAGCAGCGAAATATCCAGGAGAACCACTTTCACATCACGCTCAACTCCA
TCAATCTGGAGTACGTGGACAAGCCGTGTTGTTTGTCTTCGGCGCGCTCA
ATCTGCGCGAGGAAATCCTGGGCGTGTCTCTGAAGCCCAACCTGCCGCCG
ACGCTGTGGGCGGGCGTAGAGACGCCGAAGATGCAGTATGAGCTACAAAC
GGCACTCAAACCGCGGTTGGAGTAG
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