Ggra8744.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8744.t1
Unique NameGgra8744.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length393
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000127_piloncontigtig00000127_pilon:63317..65114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8744Ggra8744Gracilaria gracilis GNS1m malegenetig00000127_pilon 63317..65114 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8744.t1Ggra8744.t1Gracilaria gracilis GNS1m malepolypeptidetig00000127_pilon 63317..65114 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8744.t1.start1Ggra8744.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000127_pilon 63317..63319 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8744.t1.CDS1Ggra8744.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000127_pilon 63317..63733 +
Ggra8744.t1.CDS2Ggra8744.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000127_pilon 64222..64340 +
Ggra8744.t1.CDS3Ggra8744.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000127_pilon 64472..65114 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8744.t1.exon1Ggra8744.t1.exon1Gracilaria gracilis GNS1m maleexontig00000127_pilon 63317..63733 +
Ggra8744.t1.exon2Ggra8744.t1.exon2Gracilaria gracilis GNS1m maleexontig00000127_pilon 64222..64340 +
Ggra8744.t1.exon3Ggra8744.t1.exon3Gracilaria gracilis GNS1m maleexontig00000127_pilon 64472..65114 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8744.t1.intron1Ggra8744.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000127_pilon 63734..64221 +
Ggra8744.t1.intron2Ggra8744.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000127_pilon 64341..64471 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8744.t1.stop1Ggra8744.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000127_pilon 65112..65114 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8744.t1 ID=Ggra8744.t1|Name=Ggra8744.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=393bp
MPCVLLRIRILPDSVPSDSFSTHRFSSASSQNSDRAYRLAARYPLSLLRV
QRGYPRKAVRRTVLSGRRGVGGAGGGGEEAVQEGAVDLAVGVGGDGGDSG
RVGEAGGRGASPWDGDVGSDEGDGVTGLVEVAMVAKAVQTTSWIEDRHLL
FPATTTLLHAAPRRTPLSNSQIWIQRNKIQARKDSLRVYKPVPEKICRPC
QKLWRRKDLFVYEKDEHFSFRPILGGKRKRITSFGRTTKTVYSNPSFELA
EEEPPNLERTPEVEVVRNGGNQEIIAPILFSDSDSEPMAPEKDTPGPAAS
TEKEDVQEEHVDEVFNNFIGKGPLFSHILNLRQRIRDLEATLKKEQAKRN
EAEEKLEGVKSALQEERNSRIALGVTLKECWQKCEGQLSNDA*
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spliced messenger RNA

>Ggra8744.t1 ID=Ggra8744.t1|Name=Ggra8744.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1179bp|location=Sequence derived from alignment at tig00000127_pilon:63317..65114+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCTGCGTCTTGCTGCGGATTCGAATATTACCAGACAGCGTCCCGTC
TGACAGTTTCTCCACGCACAGGTTCAGCAGCGCGTCTTCGCAAAACTCCG
ATCGAGCGTACAGGTTAGCCGCCAGGTATCCGCTCTCTCTCCTGCGGGTG
CAGAGGGGGTACCCGAGGAAGGCGGTGCGACGTACGGTTTTGAGCGGCCG
CCGAGGGGTGGGTGGGGCTGGCGGAGGTGGTGAGGAAGCGGTTCAAGAAG
GTGCTGTCGATCTCGCCGTCGGCGTCGGTGGGGACGGCGGCGATTCTGGA
CGCGTGGGCGAGGCAGGCGGACGCGGTGCCTCCCCATGGGACGGAGATGT
CGGATCAGACGAAGGTGACGGTGTGACAGGCCTCGTGGAAGTCGCGATGG
TTGCGAAAGCTGTCCAGACCACGTCGTGGATTGAAGATCGTCATCTTCTG
TTTCCGGCCACCACCACATTGTTGCACGCCGCCCCAAGGAGAACACCGCT
TTCCAATTCGCAGATTTGGATTCAGAGAAACAAAATACAGGCAAGAAAAG
ACTCTCTGAGGGTATATAAACCCGTTCCGGAGAAGATTTGTCGTCCTTGC
CAGAAGCTATGGCGTAGGAAAGATTTGTTTGTTTACGAGAAAGACGAACA
CTTCTCCTTTCGGCCAATCCTAGGAGGCAAGCGAAAACGAATAACAAGCT
TTGGACGGACGACAAAAACTGTCTACTCAAACCCGTCCTTTGAACTCGCC
GAAGAAGAACCTCCTAATCTGGAGAGGACTCCGGAAGTGGAAGTGGTTCG
AAACGGTGGAAATCAAGAAATTATCGCCCCAATTTTATTCAGTGATTCAG
ACTCGGAACCTATGGCTCCTGAAAAAGACACTCCGGGCCCCGCGGCTTCT
ACAGAAAAGGAAGATGTACAAGAGGAACATGTAGATGAAGTTTTCAACAA
CTTTATCGGAAAGGGTCCATTGTTCTCACACATACTGAATCTGCGCCAGA
GGATACGTGATCTTgaagcgacgcttaaaaaagagcaagcgaagcgcaac
gaagcggaagagaagcTCGAGGGAGTCAAGTCAGCGTTGCAAGAAGAACG
CAATTCTAGGATAGCACTGGGGGTTACTCTAAAAGAGTGTTGGCAGAAAT
GCGAAGGACAACTTTCAAACGATGCTTGA
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protein sequence of Ggra8744.t1

>Ggra8744.t1 ID=Ggra8744.t1|Name=Ggra8744.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=393bp
MPCVLLRIRILPDSVPSDSFSTHRFSSASSQNSDRAYRLAARYPLSLLRV
QRGYPRKAVRRTVLSGRRGVGGAGGGGEEAVQEGAVDLAVGVGGDGGDSG
RVGEAGGRGASPWDGDVGSDEGDGVTGLVEVAMVAKAVQTTSWIEDRHLL
FPATTTLLHAAPRRTPLSNSQIWIQRNKIQARKDSLRVYKPVPEKICRPC
QKLWRRKDLFVYEKDEHFSFRPILGGKRKRITSFGRTTKTVYSNPSFELA
EEEPPNLERTPEVEVVRNGGNQEIIAPILFSDSDSEPMAPEKDTPGPAAS
TEKEDVQEEHVDEVFNNFIGKGPLFSHILNLRQRIRDLEATLKKEQAKRN
EAEEKLEGVKSALQEERNSRIALGVTLKECWQKCEGQLSNDA*
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mRNA from alignment at tig00000127_pilon:63317..65114+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8744.t1 ID=Ggra8744.t1|Name=Ggra8744.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1798bp|location=Sequence derived from alignment at tig00000127_pilon:63317..65114+ (Gracilaria gracilis GNS1m male)
ATGCCCTGCGTCTTGCTGCGGATTCGAATATTACCAGACAGCGTCCCGTC
TGACAGTTTCTCCACGCACAGGTTCAGCAGCGCGTCTTCGCAAAACTCCG
ATCGAGCGTACAGGTTAGCCGCCAGGTATCCGCTCTCTCTCCTGCGGGTG
CAGAGGGGGTACCCGAGGAAGGCGGTGCGACGTACGGTTTTGAGCGGCCG
CCGAGGGGTGGGTGGGGCTGGCGGAGGTGGTGAGGAAGCGGTTCAAGAAG
GTGCTGTCGATCTCGCCGTCGGCGTCGGTGGGGACGGCGGCGATTCTGGA
CGCGTGGGCGAGGCAGGCGGACGCGGTGCCTCCCCATGGGACGGAGATGT
CGGATCAGACGAAGGTGACGGTGTGACAGGCCTCGTGGAAGTCGCGATGG
TTGCGAAAGCTGTCCAGGTACGTGTAGAGCTTTGGCGACTTGGATTCCAG
CAGCGAGTGCTGCGGGACGTACAGCCTGTACGGTACAGGTGAAGCGCGCG
ACGTAGCGCCTGTGTGCGTACTGACTGCGCTCGATTTCCAgcgtgcgcaa
cgacggcgcacagcgcgcgcgcgcgcgagcCAAACAGCGAGCTGAGGGCG
GCGGCGGCGCGAGCAGAAGCTCACGCTCACCACCGCCGTAAGTACCCGCA
CCCCGCACCGCACACCCCCCTCTCCCCCGCGCTTTCTGGGACGGCGGATT
GGATTATGCGCATGGCACGGGACACGGAGTCCACTGGGGTCGTTCATGAA
CGTGCACGAGAGACTGCACATGATTTCAATGAAGCGGGGTACTACGGGGA
GGGCGCGTTTGGCATCCGCATTGAGAACCTGTGCATCGTGAGAAAGACGA
TGGAGCATATCACGCTGTGCCCTTTTCGGAACTCGATCTTGCCATGTTCG
AACAGACCACGTCGTGGATTGAAGATCGTCATCTTCTGTTTCCGGCCACC
ACCACATTGTTGCACGCCGCCCCAAGGAGAACACCGCTTTCCAATTCGCA
GATTTGGATTCAGAGAAACAAAATGTATAATCGTGGTATTCCCGCAAGCT
TCTGTAAGCCTCACACGCACGGTTAGTAACTAGGATACTGTTCGGCTGTG
GTACTACGCTCTCCGTTTTGTATTCCGGAATGCCATCGTGCCTGCGTTGT
GGAAGACAGGCAAGAAAAGACTCTCTGAGGGTATATAAACCCGTTCCGGA
GAAGATTTGTCGTCCTTGCCAGAAGCTATGGCGTAGGAAAGATTTGTTTG
TTTACGAGAAAGACGAACACTTCTCCTTTCGGCCAATCCTAGGAGGCAAG
CGAAAACGAATAACAAGCTTTGGACGGACGACAAAAACTGTCTACTCAAA
CCCGTCCTTTGAACTCGCCGAAGAAGAACCTCCTAATCTGGAGAGGACTC
CGGAAGTGGAAGTGGTTCGAAACGGTGGAAATCAAGAAATTATCGCCCCA
ATTTTATTCAGTGATTCAGACTCGGAACCTATGGCTCCTGAAAAAGACAC
TCCGGGCCCCGCGGCTTCTACAGAAAAGGAAGATGTACAAGAGGAACATG
TAGATGAAGTTTTCAACAACTTTATCGGAAAGGGTCCATTGTTCTCACAC
ATACTGAATCTGCGCCAGAGGATACGTGATCTTgaagcgacgcttaaaaa
agagcaagcgaagcgcaacgaagcggaagagaagcTCGAGGGAGTCAAGT
CAGCGTTGCAAGAAGAACGCAATTCTAGGATAGCACTGGGGGTTACTCTA
AAAGAGTGTTGGCAGAAATGCGAAGGACAACTTTCAAACGATGCTTGA
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Coding sequence (CDS) from alignment at tig00000127_pilon:63317..65114+

>Ggra8744.t1 ID=Ggra8744.t1|Name=Ggra8744.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1179bp|location=Sequence derived from alignment at tig00000127_pilon:63317..65114+ (Gracilaria gracilis GNS1m male)
ATGCCCTGCGTCTTGCTGCGGATTCGAATATTACCAGACAGCGTCCCGTC
TGACAGTTTCTCCACGCACAGGTTCAGCAGCGCGTCTTCGCAAAACTCCG
ATCGAGCGTACAGGTTAGCCGCCAGGTATCCGCTCTCTCTCCTGCGGGTG
CAGAGGGGGTACCCGAGGAAGGCGGTGCGACGTACGGTTTTGAGCGGCCG
CCGAGGGGTGGGTGGGGCTGGCGGAGGTGGTGAGGAAGCGGTTCAAGAAG
GTGCTGTCGATCTCGCCGTCGGCGTCGGTGGGGACGGCGGCGATTCTGGA
CGCGTGGGCGAGGCAGGCGGACGCGGTGCCTCCCCATGGGACGGAGATGT
CGGATCAGACGAAGGTGACGGTGTGACAGGCCTCGTGGAAGTCGCGATGG
TTGCGAAAGCTGTCCAGACCACGTCGTGGATTGAAGATCGTCATCTTCTG
TTTCCGGCCACCACCACATTGTTGCACGCCGCCCCAAGGAGAACACCGCT
TTCCAATTCGCAGATTTGGATTCAGAGAAACAAAATACAGGCAAGAAAAG
ACTCTCTGAGGGTATATAAACCCGTTCCGGAGAAGATTTGTCGTCCTTGC
CAGAAGCTATGGCGTAGGAAAGATTTGTTTGTTTACGAGAAAGACGAACA
CTTCTCCTTTCGGCCAATCCTAGGAGGCAAGCGAAAACGAATAACAAGCT
TTGGACGGACGACAAAAACTGTCTACTCAAACCCGTCCTTTGAACTCGCC
GAAGAAGAACCTCCTAATCTGGAGAGGACTCCGGAAGTGGAAGTGGTTCG
AAACGGTGGAAATCAAGAAATTATCGCCCCAATTTTATTCAGTGATTCAG
ACTCGGAACCTATGGCTCCTGAAAAAGACACTCCGGGCCCCGCGGCTTCT
ACAGAAAAGGAAGATGTACAAGAGGAACATGTAGATGAAGTTTTCAACAA
CTTTATCGGAAAGGGTCCATTGTTCTCACACATACTGAATCTGCGCCAGA
GGATACGTGATCTTgaagcgacgcttaaaaaagagcaagcgaagcgcaac
gaagcggaagagaagcTCGAGGGAGTCAAGTCAGCGTTGCAAGAAGAACG
CAATTCTAGGATAGCACTGGGGGTTACTCTAAAAGAGTGTTGGCAGAAAT
GCGAAGGACAACTTTCAAACGATGCTTGA
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